Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC26.63■■□□□ 1.85
Col1a1P11087 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
Col1a1P11087 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Col1a1P11087 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC26.63■■□□□ 1.85
Col1a1P11087 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Col1a1P11087 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC26.62■■□□□ 1.85
Col1a1P11087 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Col1a1P11087 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
Col1a1P11087 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Col1a1P11087 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC26.62■■□□□ 1.85
Col1a1P11087 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Col1a1P11087 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Col1a1P11087 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Col1a1P11087 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Col1a1P11087 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
Col1a1P11087 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Col1a1P11087 Fezf2-202ENSMUST00000224023 1917 ntBASIC26.6■■□□□ 1.85
Col1a1P11087 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC26.59■■□□□ 1.85
Col1a1P11087 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
Col1a1P11087 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC26.59■■□□□ 1.85
Col1a1P11087 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
Col1a1P11087 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC26.59■■□□□ 1.85
Col1a1P11087 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC26.58■■□□□ 1.85
Col1a1P11087 Gm7199-201ENSMUST00000118327 1485 ntBASIC26.58■■□□□ 1.85
Col1a1P11087 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Col1a1P11087 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC26.57■■□□□ 1.84
Col1a1P11087 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
Col1a1P11087 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Col1a1P11087 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC26.56■■□□□ 1.84
Col1a1P11087 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC26.55■■□□□ 1.84
Col1a1P11087 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
Col1a1P11087 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC26.55■■□□□ 1.84
Col1a1P11087 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC26.55■■□□□ 1.84
Col1a1P11087 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC26.54■■□□□ 1.84
Col1a1P11087 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
Col1a1P11087 Gm16464-201ENSMUST00000117815 1095 ntBASIC26.54■■□□□ 1.84
Col1a1P11087 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Col1a1P11087 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Col1a1P11087 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC26.53■■□□□ 1.84
Col1a1P11087 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Col1a1P11087 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Col1a1P11087 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Col1a1P11087 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC26.52■■□□□ 1.84
Col1a1P11087 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Col1a1P11087 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
Col1a1P11087 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC26.51■■□□□ 1.83
Col1a1P11087 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Col1a1P11087 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC26.5■■□□□ 1.83
Col1a1P11087 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Col1a1P11087 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Col1a1P11087 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC26.49■■□□□ 1.83
Col1a1P11087 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC26.49■■□□□ 1.83
Col1a1P11087 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC26.49■■□□□ 1.83
Col1a1P11087 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC26.49■■□□□ 1.83
Col1a1P11087 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC26.49■■□□□ 1.83
Col1a1P11087 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Col1a1P11087 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC26.48■■□□□ 1.83
Col1a1P11087 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Col1a1P11087 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC26.48■■□□□ 1.83
Col1a1P11087 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
Col1a1P11087 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
Col1a1P11087 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
Col1a1P11087 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC26.47■■□□□ 1.83
Col1a1P11087 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
Col1a1P11087 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC26.47■■□□□ 1.83
Col1a1P11087 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
Col1a1P11087 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC26.46■■□□□ 1.83
Col1a1P11087 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC26.46■■□□□ 1.83
Col1a1P11087 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC26.46■■□□□ 1.83
Col1a1P11087 Gm13241-201ENSMUST00000094493 780 ntBASIC26.46■■□□□ 1.83
Col1a1P11087 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC26.46■■□□□ 1.83
Col1a1P11087 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC26.45■■□□□ 1.82
Col1a1P11087 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC26.45■■□□□ 1.82
Col1a1P11087 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
Col1a1P11087 AC164433.2-201ENSMUST00000226346 1701 ntBASIC26.44■■□□□ 1.82
Col1a1P11087 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
Col1a1P11087 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC26.44■■□□□ 1.82
Col1a1P11087 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
Col1a1P11087 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC26.44■■□□□ 1.82
Col1a1P11087 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
Col1a1P11087 Gm7417-201ENSMUST00000192950 473 ntBASIC26.43■■□□□ 1.82
Col1a1P11087 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC26.43■■□□□ 1.82
Col1a1P11087 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
Col1a1P11087 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC26.4■■□□□ 1.82
Col1a1P11087 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC26.4■■□□□ 1.82
Col1a1P11087 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC26.39■■□□□ 1.82
Col1a1P11087 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
Col1a1P11087 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC26.39■■□□□ 1.81
Col1a1P11087 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
Col1a1P11087 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
Col1a1P11087 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
Col1a1P11087 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
Col1a1P11087 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC26.38■■□□□ 1.81
Col1a1P11087 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
Col1a1P11087 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
Col1a1P11087 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC26.37■■□□□ 1.81
Col1a1P11087 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC26.36■■□□□ 1.81
Col1a1P11087 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
Col1a1P11087 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
Col1a1P11087 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Retrieved 100 of 76,532 protein–RNA pairs in 72.1 ms