Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Col5a1O88207 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Col5a1O88207 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Col5a1O88207 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Col5a1O88207 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col5a1O88207 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC20.66■□□□□ 0.9
Col5a1O88207 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col5a1O88207 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Col5a1O88207 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Col5a1O88207 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Col5a1O88207 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC20.65■□□□□ 0.9
Col5a1O88207 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col5a1O88207 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC20.64■□□□□ 0.9
Col5a1O88207 Nsd1-203ENSMUST00000224156 1149 ntBASIC20.64■□□□□ 0.9
Col5a1O88207 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Col5a1O88207 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Col5a1O88207 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Col5a1O88207 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
Col5a1O88207 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC20.64■□□□□ 0.89
Col5a1O88207 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col5a1O88207 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Col5a1O88207 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col5a1O88207 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Col5a1O88207 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col5a1O88207 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
Col5a1O88207 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col5a1O88207 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col5a1O88207 Gm43592-201ENSMUST00000196922 1165 ntBASIC20.61■□□□□ 0.89
Col5a1O88207 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col5a1O88207 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col5a1O88207 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col5a1O88207 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Col5a1O88207 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col5a1O88207 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col5a1O88207 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col5a1O88207 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC20.6■□□□□ 0.89
Col5a1O88207 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Col5a1O88207 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC20.6■□□□□ 0.89
Col5a1O88207 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col5a1O88207 Gm42501-201ENSMUST00000200220 1026 ntBASIC20.6■□□□□ 0.89
Col5a1O88207 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Col5a1O88207 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Col5a1O88207 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Col5a1O88207 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col5a1O88207 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col5a1O88207 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
Col5a1O88207 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col5a1O88207 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC20.58■□□□□ 0.89
Col5a1O88207 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col5a1O88207 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col5a1O88207 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col5a1O88207 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col5a1O88207 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC20.57■□□□□ 0.88
Col5a1O88207 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col5a1O88207 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col5a1O88207 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC20.57■□□□□ 0.88
Col5a1O88207 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col5a1O88207 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Col5a1O88207 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col5a1O88207 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col5a1O88207 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col5a1O88207 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Col5a1O88207 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col5a1O88207 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col5a1O88207 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Col5a1O88207 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col5a1O88207 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col5a1O88207 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC20.53■□□□□ 0.88
Col5a1O88207 Gm18755-201ENSMUST00000218030 1099 ntBASIC20.53■□□□□ 0.88
Col5a1O88207 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col5a1O88207 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col5a1O88207 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Col5a1O88207 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col5a1O88207 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col5a1O88207 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Col5a1O88207 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Col5a1O88207 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col5a1O88207 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col5a1O88207 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC20.51■□□□□ 0.87
Col5a1O88207 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Col5a1O88207 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col5a1O88207 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col5a1O88207 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC20.51■□□□□ 0.87
Col5a1O88207 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC20.5■□□□□ 0.87
Col5a1O88207 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC20.5■□□□□ 0.87
Col5a1O88207 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col5a1O88207 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
Col5a1O88207 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC20.5■□□□□ 0.87
Col5a1O88207 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC20.5■□□□□ 0.87
Col5a1O88207 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col5a1O88207 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col5a1O88207 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC20.49■□□□□ 0.87
Col5a1O88207 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC20.49■□□□□ 0.87
Col5a1O88207 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col5a1O88207 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col5a1O88207 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Col5a1O88207 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC20.48■□□□□ 0.87
Col5a1O88207 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Col5a1O88207 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Col5a1O88207 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 20 ms