Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
Cpsf1Q9EPU4 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
Cpsf1Q9EPU4 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC31.89■■■□□ 2.7
Cpsf1Q9EPU4 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC31.89■■■□□ 2.7
Cpsf1Q9EPU4 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
Cpsf1Q9EPU4 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC31.89■■■□□ 2.7
Cpsf1Q9EPU4 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
Cpsf1Q9EPU4 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.69
Cpsf1Q9EPU4 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC31.88■■■□□ 2.69
Cpsf1Q9EPU4 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
Cpsf1Q9EPU4 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
Cpsf1Q9EPU4 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC31.86■■■□□ 2.69
Cpsf1Q9EPU4 Gm44428-201ENSMUST00000204474 874 ntBASIC31.86■■■□□ 2.69
Cpsf1Q9EPU4 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
Cpsf1Q9EPU4 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC31.85■■■□□ 2.69
Cpsf1Q9EPU4 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC31.85■■■□□ 2.69
Cpsf1Q9EPU4 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC31.85■■■□□ 2.69
Cpsf1Q9EPU4 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC31.84■■■□□ 2.69
Cpsf1Q9EPU4 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC31.84■■■□□ 2.69
Cpsf1Q9EPU4 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC31.84■■■□□ 2.69
Cpsf1Q9EPU4 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC31.83■■■□□ 2.69
Cpsf1Q9EPU4 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
Cpsf1Q9EPU4 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC31.83■■■□□ 2.69
Cpsf1Q9EPU4 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC31.82■■■□□ 2.68
Cpsf1Q9EPU4 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
Cpsf1Q9EPU4 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
Cpsf1Q9EPU4 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC31.82■■■□□ 2.68
Cpsf1Q9EPU4 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC31.82■■■□□ 2.68
Cpsf1Q9EPU4 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
Cpsf1Q9EPU4 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC31.81■■■□□ 2.68
Cpsf1Q9EPU4 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
Cpsf1Q9EPU4 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC31.81■■■□□ 2.68
Cpsf1Q9EPU4 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
Cpsf1Q9EPU4 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC31.8■■■□□ 2.68
Cpsf1Q9EPU4 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
Cpsf1Q9EPU4 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC31.78■■■□□ 2.68
Cpsf1Q9EPU4 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC31.78■■■□□ 2.68
Cpsf1Q9EPU4 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC31.77■■■□□ 2.68
Cpsf1Q9EPU4 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC31.77■■■□□ 2.68
Cpsf1Q9EPU4 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC31.77■■■□□ 2.68
Cpsf1Q9EPU4 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC31.76■■■□□ 2.68
Cpsf1Q9EPU4 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC31.76■■■□□ 2.68
Cpsf1Q9EPU4 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC31.76■■■□□ 2.67
Cpsf1Q9EPU4 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC31.76■■■□□ 2.67
Cpsf1Q9EPU4 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
Cpsf1Q9EPU4 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC31.75■■■□□ 2.67
Cpsf1Q9EPU4 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
Cpsf1Q9EPU4 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC31.75■■■□□ 2.67
Cpsf1Q9EPU4 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC31.74■■■□□ 2.67
Cpsf1Q9EPU4 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC31.74■■■□□ 2.67
Cpsf1Q9EPU4 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC31.74■■■□□ 2.67
Cpsf1Q9EPU4 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC31.73■■■□□ 2.67
Cpsf1Q9EPU4 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC31.73■■■□□ 2.67
Cpsf1Q9EPU4 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
Cpsf1Q9EPU4 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC31.72■■■□□ 2.67
Cpsf1Q9EPU4 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC31.71■■■□□ 2.67
Cpsf1Q9EPU4 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
Cpsf1Q9EPU4 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
Cpsf1Q9EPU4 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
Cpsf1Q9EPU4 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC31.7■■■□□ 2.66
Cpsf1Q9EPU4 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC31.7■■■□□ 2.66
Cpsf1Q9EPU4 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC31.7■■■□□ 2.66
Cpsf1Q9EPU4 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
Cpsf1Q9EPU4 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
Cpsf1Q9EPU4 AC164433.2-201ENSMUST00000226346 1701 ntBASIC31.68■■■□□ 2.66
Cpsf1Q9EPU4 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC31.67■■■□□ 2.66
Cpsf1Q9EPU4 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC31.67■■■□□ 2.66
Cpsf1Q9EPU4 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC31.67■■■□□ 2.66
Cpsf1Q9EPU4 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC31.67■■■□□ 2.66
Cpsf1Q9EPU4 Gm10420-201ENSMUST00000121713 882 ntBASIC31.66■■■□□ 2.66
Cpsf1Q9EPU4 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
Cpsf1Q9EPU4 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
Cpsf1Q9EPU4 Gm42699-201ENSMUST00000198104 1657 ntBASIC31.65■■■□□ 2.66
Cpsf1Q9EPU4 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC31.65■■■□□ 2.66
Cpsf1Q9EPU4 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
Cpsf1Q9EPU4 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
Cpsf1Q9EPU4 Gm7199-201ENSMUST00000118327 1485 ntBASIC31.63■■■□□ 2.65
Cpsf1Q9EPU4 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC31.63■■■□□ 2.65
Cpsf1Q9EPU4 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
Cpsf1Q9EPU4 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC31.63■■■□□ 2.65
Cpsf1Q9EPU4 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
Cpsf1Q9EPU4 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
Cpsf1Q9EPU4 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
Cpsf1Q9EPU4 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC31.61■■■□□ 2.65
Cpsf1Q9EPU4 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
Cpsf1Q9EPU4 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
Cpsf1Q9EPU4 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC31.6■■■□□ 2.65
Cpsf1Q9EPU4 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
Cpsf1Q9EPU4 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC31.6■■■□□ 2.65
Cpsf1Q9EPU4 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
Cpsf1Q9EPU4 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
Cpsf1Q9EPU4 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
Cpsf1Q9EPU4 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC31.6■■■□□ 2.65
Cpsf1Q9EPU4 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
Cpsf1Q9EPU4 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC31.58■■■□□ 2.65
Cpsf1Q9EPU4 Gm5067-201ENSMUST00000170449 1009 ntBASIC31.58■■■□□ 2.65
Cpsf1Q9EPU4 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC31.58■■■□□ 2.65
Cpsf1Q9EPU4 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC31.58■■■□□ 2.65
Cpsf1Q9EPU4 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC31.58■■■□□ 2.65
Cpsf1Q9EPU4 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
Retrieved 100 of 76,532 protein–RNA pairs in 25.4 ms