Protein–RNA interactions for Protein: A0A140T8P8

Trbv17, T cell receptor beta, variable 17 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv17A0A140T8P8 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trbv17A0A140T8P8 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trbv17A0A140T8P8 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Trbv17A0A140T8P8 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trbv17A0A140T8P8 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trbv17A0A140T8P8 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trbv17A0A140T8P8 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trbv17A0A140T8P8 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Trbv17A0A140T8P8 Gm13889-201ENSMUST00000099689 1386 ntBASIC17.1■□□□□ 0.33
Trbv17A0A140T8P8 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trbv17A0A140T8P8 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trbv17A0A140T8P8 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trbv17A0A140T8P8 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trbv17A0A140T8P8 Gm6311-201ENSMUST00000073790 878 ntBASIC17.09■□□□□ 0.33
Trbv17A0A140T8P8 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trbv17A0A140T8P8 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Trbv17A0A140T8P8 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
Trbv17A0A140T8P8 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trbv17A0A140T8P8 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trbv17A0A140T8P8 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trbv17A0A140T8P8 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Trbv17A0A140T8P8 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trbv17A0A140T8P8 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Trbv17A0A140T8P8 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC17.08■□□□□ 0.32
Trbv17A0A140T8P8 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC17.08■□□□□ 0.32
Trbv17A0A140T8P8 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trbv17A0A140T8P8 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trbv17A0A140T8P8 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trbv17A0A140T8P8 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Trbv17A0A140T8P8 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trbv17A0A140T8P8 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trbv17A0A140T8P8 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC17.07■□□□□ 0.32
Trbv17A0A140T8P8 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trbv17A0A140T8P8 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trbv17A0A140T8P8 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trbv17A0A140T8P8 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Trbv17A0A140T8P8 Gm5987-201ENSMUST00000196433 1151 ntBASIC17.06■□□□□ 0.32
Trbv17A0A140T8P8 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC17.06■□□□□ 0.32
Trbv17A0A140T8P8 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC17.05■□□□□ 0.32
Trbv17A0A140T8P8 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trbv17A0A140T8P8 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC17.05■□□□□ 0.32
Trbv17A0A140T8P8 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trbv17A0A140T8P8 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC17.04■□□□□ 0.32
Trbv17A0A140T8P8 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trbv17A0A140T8P8 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC17.04■□□□□ 0.32
Trbv17A0A140T8P8 AC154454.1-201ENSMUST00000225253 216 ntBASIC17.04■□□□□ 0.32
Trbv17A0A140T8P8 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trbv17A0A140T8P8 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trbv17A0A140T8P8 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Trbv17A0A140T8P8 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trbv17A0A140T8P8 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Trbv17A0A140T8P8 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trbv17A0A140T8P8 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trbv17A0A140T8P8 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trbv17A0A140T8P8 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trbv17A0A140T8P8 Pkd1-207ENSMUST00000228550 1050 ntBASIC17.02■□□□□ 0.32
Trbv17A0A140T8P8 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC17.02■□□□□ 0.32
Trbv17A0A140T8P8 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Trbv17A0A140T8P8 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Trbv17A0A140T8P8 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trbv17A0A140T8P8 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trbv17A0A140T8P8 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trbv17A0A140T8P8 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trbv17A0A140T8P8 Gm45364-201ENSMUST00000210883 159 ntBASIC17.01■□□□□ 0.31
Trbv17A0A140T8P8 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC17.01■□□□□ 0.31
Trbv17A0A140T8P8 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trbv17A0A140T8P8 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC17.01■□□□□ 0.31
Trbv17A0A140T8P8 Gm12818-201ENSMUST00000117562 1349 ntBASIC17■□□□□ 0.31
Trbv17A0A140T8P8 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trbv17A0A140T8P8 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC17■□□□□ 0.31
Trbv17A0A140T8P8 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trbv17A0A140T8P8 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trbv17A0A140T8P8 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trbv17A0A140T8P8 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
Trbv17A0A140T8P8 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trbv17A0A140T8P8 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
Trbv17A0A140T8P8 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
Trbv17A0A140T8P8 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trbv17A0A140T8P8 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Trbv17A0A140T8P8 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trbv17A0A140T8P8 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trbv17A0A140T8P8 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trbv17A0A140T8P8 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
Trbv17A0A140T8P8 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trbv17A0A140T8P8 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC16.98■□□□□ 0.31
Trbv17A0A140T8P8 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Trbv17A0A140T8P8 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC16.98■□□□□ 0.31
Trbv17A0A140T8P8 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
Trbv17A0A140T8P8 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trbv17A0A140T8P8 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trbv17A0A140T8P8 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Trbv17A0A140T8P8 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Trbv17A0A140T8P8 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
Trbv17A0A140T8P8 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trbv17A0A140T8P8 Gm9812-201ENSMUST00000061934 968 ntBASIC16.97■□□□□ 0.31
Trbv17A0A140T8P8 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trbv17A0A140T8P8 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
Trbv17A0A140T8P8 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Trbv17A0A140T8P8 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trbv17A0A140T8P8 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 15.6 ms