Protein–RNA interactions for Protein: Q9EQM3

Nkx2-4, Homeobox protein Nkx-2.4, mousemouse

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-4Q9EQM3 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Nkx2-4Q9EQM3 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Nkx2-4Q9EQM3 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC23.99■■□□□ 1.43
Nkx2-4Q9EQM3 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
Nkx2-4Q9EQM3 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
Nkx2-4Q9EQM3 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Nkx2-4Q9EQM3 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC23.98■■□□□ 1.43
Nkx2-4Q9EQM3 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
Nkx2-4Q9EQM3 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
Nkx2-4Q9EQM3 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Nkx2-4Q9EQM3 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC23.97■■□□□ 1.43
Nkx2-4Q9EQM3 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC23.97■■□□□ 1.43
Nkx2-4Q9EQM3 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC23.97■■□□□ 1.43
Nkx2-4Q9EQM3 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Nkx2-4Q9EQM3 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC23.96■■□□□ 1.43
Nkx2-4Q9EQM3 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Nkx2-4Q9EQM3 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
Nkx2-4Q9EQM3 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Nkx2-4Q9EQM3 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC23.95■■□□□ 1.43
Nkx2-4Q9EQM3 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC23.95■■□□□ 1.43
Nkx2-4Q9EQM3 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
Nkx2-4Q9EQM3 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
Nkx2-4Q9EQM3 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Nkx2-4Q9EQM3 Gm43592-201ENSMUST00000196922 1165 ntBASIC23.94■■□□□ 1.42
Nkx2-4Q9EQM3 Gm45444-201ENSMUST00000211394 898 ntBASIC23.94■■□□□ 1.42
Nkx2-4Q9EQM3 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Nkx2-4Q9EQM3 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Nkx2-4Q9EQM3 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Nkx2-4Q9EQM3 Gm42501-201ENSMUST00000200220 1026 ntBASIC23.93■■□□□ 1.42
Nkx2-4Q9EQM3 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Nkx2-4Q9EQM3 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Nkx2-4Q9EQM3 Gm9959-201ENSMUST00000068277 390 ntBASIC23.93■■□□□ 1.42
Nkx2-4Q9EQM3 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Nkx2-4Q9EQM3 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
Nkx2-4Q9EQM3 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Nkx2-4Q9EQM3 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Nkx2-4Q9EQM3 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Nkx2-4Q9EQM3 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
Nkx2-4Q9EQM3 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
Nkx2-4Q9EQM3 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Nkx2-4Q9EQM3 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Nkx2-4Q9EQM3 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC23.88■■□□□ 1.41
Nkx2-4Q9EQM3 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC23.88■■□□□ 1.41
Nkx2-4Q9EQM3 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC23.88■■□□□ 1.41
Nkx2-4Q9EQM3 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Nkx2-4Q9EQM3 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Nkx2-4Q9EQM3 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC23.88■■□□□ 1.41
Nkx2-4Q9EQM3 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC23.87■■□□□ 1.41
Nkx2-4Q9EQM3 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
Nkx2-4Q9EQM3 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Nkx2-4Q9EQM3 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC23.86■■□□□ 1.41
Nkx2-4Q9EQM3 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Nkx2-4Q9EQM3 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC23.85■■□□□ 1.41
Nkx2-4Q9EQM3 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC23.85■■□□□ 1.41
Nkx2-4Q9EQM3 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Nkx2-4Q9EQM3 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Nkx2-4Q9EQM3 Gm14121-201ENSMUST00000121441 1380 ntBASIC23.84■■□□□ 1.41
Nkx2-4Q9EQM3 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
Nkx2-4Q9EQM3 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Nkx2-4Q9EQM3 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
Nkx2-4Q9EQM3 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
Nkx2-4Q9EQM3 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
Nkx2-4Q9EQM3 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC23.83■■□□□ 1.41
Nkx2-4Q9EQM3 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC23.83■■□□□ 1.4
Nkx2-4Q9EQM3 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Nkx2-4Q9EQM3 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC23.81■■□□□ 1.4
Nkx2-4Q9EQM3 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC23.81■■□□□ 1.4
Nkx2-4Q9EQM3 Gm18755-201ENSMUST00000218030 1099 ntBASIC23.81■■□□□ 1.4
Nkx2-4Q9EQM3 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Nkx2-4Q9EQM3 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC23.8■■□□□ 1.4
Nkx2-4Q9EQM3 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Nkx2-4Q9EQM3 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
Nkx2-4Q9EQM3 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Nkx2-4Q9EQM3 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
Nkx2-4Q9EQM3 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC23.79■■□□□ 1.4
Nkx2-4Q9EQM3 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
Nkx2-4Q9EQM3 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
Nkx2-4Q9EQM3 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
Nkx2-4Q9EQM3 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Nkx2-4Q9EQM3 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Nkx2-4Q9EQM3 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
Nkx2-4Q9EQM3 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC23.78■■□□□ 1.4
Nkx2-4Q9EQM3 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Nkx2-4Q9EQM3 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Nkx2-4Q9EQM3 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC23.77■■□□□ 1.4
Nkx2-4Q9EQM3 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC23.76■■□□□ 1.39
Nkx2-4Q9EQM3 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Nkx2-4Q9EQM3 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Nkx2-4Q9EQM3 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
Nkx2-4Q9EQM3 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.39
Nkx2-4Q9EQM3 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC23.75■■□□□ 1.39
Nkx2-4Q9EQM3 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC23.75■■□□□ 1.39
Nkx2-4Q9EQM3 Gm37847-201ENSMUST00000192163 1497 ntBASIC23.75■■□□□ 1.39
Nkx2-4Q9EQM3 Gm31748-201ENSMUST00000194938 1497 ntBASIC23.75■■□□□ 1.39
Nkx2-4Q9EQM3 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC23.74■■□□□ 1.39
Nkx2-4Q9EQM3 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC23.73■■□□□ 1.39
Nkx2-4Q9EQM3 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Nkx2-4Q9EQM3 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
Nkx2-4Q9EQM3 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Nkx2-4Q9EQM3 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Retrieved 100 of 76,532 protein–RNA pairs in 19.1 ms