Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col7a1Q63870 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col7a1Q63870 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC19.89■□□□□ 0.77
Col7a1Q63870 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col7a1Q63870 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
Col7a1Q63870 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Col7a1Q63870 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col7a1Q63870 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
Col7a1Q63870 Gm43034-201ENSMUST00000198678 1364 ntBASIC19.87■□□□□ 0.77
Col7a1Q63870 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Col7a1Q63870 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col7a1Q63870 Gm18755-201ENSMUST00000218030 1099 ntBASIC19.86■□□□□ 0.77
Col7a1Q63870 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col7a1Q63870 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
Col7a1Q63870 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC19.85■□□□□ 0.77
Col7a1Q63870 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC19.85■□□□□ 0.77
Col7a1Q63870 Gm43592-201ENSMUST00000196922 1165 ntBASIC19.85■□□□□ 0.77
Col7a1Q63870 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC19.85■□□□□ 0.77
Col7a1Q63870 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col7a1Q63870 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col7a1Q63870 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
Col7a1Q63870 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC19.84■□□□□ 0.77
Col7a1Q63870 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col7a1Q63870 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Col7a1Q63870 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col7a1Q63870 Gm9905-201ENSMUST00000065740 1845 ntBASIC19.84■□□□□ 0.77
Col7a1Q63870 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
Col7a1Q63870 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC19.84■□□□□ 0.77
Col7a1Q63870 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Col7a1Q63870 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Col7a1Q63870 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Col7a1Q63870 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Col7a1Q63870 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Col7a1Q63870 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Col7a1Q63870 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Col7a1Q63870 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Col7a1Q63870 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col7a1Q63870 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC19.81■□□□□ 0.76
Col7a1Q63870 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC19.81■□□□□ 0.76
Col7a1Q63870 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col7a1Q63870 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col7a1Q63870 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col7a1Q63870 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col7a1Q63870 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
Col7a1Q63870 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col7a1Q63870 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col7a1Q63870 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col7a1Q63870 Gm6658-202ENSMUST00000209493 1885 ntBASIC19.79■□□□□ 0.76
Col7a1Q63870 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC19.78■□□□□ 0.76
Col7a1Q63870 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col7a1Q63870 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC19.77■□□□□ 0.76
Col7a1Q63870 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Col7a1Q63870 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC19.76■□□□□ 0.75
Col7a1Q63870 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col7a1Q63870 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Col7a1Q63870 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
Col7a1Q63870 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col7a1Q63870 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC19.75■□□□□ 0.75
Col7a1Q63870 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col7a1Q63870 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col7a1Q63870 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Col7a1Q63870 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col7a1Q63870 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col7a1Q63870 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col7a1Q63870 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col7a1Q63870 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Col7a1Q63870 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Col7a1Q63870 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col7a1Q63870 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC19.73■□□□□ 0.75
Col7a1Q63870 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Col7a1Q63870 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC19.72■□□□□ 0.75
Col7a1Q63870 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
Col7a1Q63870 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Col7a1Q63870 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Col7a1Q63870 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Col7a1Q63870 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC19.71■□□□□ 0.75
Col7a1Q63870 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
Col7a1Q63870 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Col7a1Q63870 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC19.71■□□□□ 0.75
Col7a1Q63870 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Col7a1Q63870 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col7a1Q63870 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col7a1Q63870 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col7a1Q63870 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC19.7■□□□□ 0.74
Col7a1Q63870 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC19.7■□□□□ 0.74
Col7a1Q63870 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Col7a1Q63870 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Col7a1Q63870 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col7a1Q63870 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC19.68■□□□□ 0.74
Col7a1Q63870 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC19.68■□□□□ 0.74
Col7a1Q63870 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Col7a1Q63870 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col7a1Q63870 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC19.68■□□□□ 0.74
Col7a1Q63870 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col7a1Q63870 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col7a1Q63870 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col7a1Q63870 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Col7a1Q63870 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col7a1Q63870 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
Col7a1Q63870 Gm10232-201ENSMUST00000089221 720 ntBASIC19.66■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 35.6 ms