Protein–RNA interactions for Protein: P34223

SHP1, UBX domain-containing protein 1, yeast

Predictions only

Length 423 aa.

Protein		RNA				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	UniProt Accession	Gene	Ensembl Transcript ID	Length	Transcript Status	Prediction Score	Prediction z-Score	Detected Interaction
SHP1	P34223	MET8	YBR213W	825 nt		7.76	□□□□□ -1.17
SHP1	P34223	ADE16	YLR028C	1776 nt		7.76	□□□□□ -1.17
SHP1	P34223	FRA1	YLL029W	2250 nt		7.76	□□□□□ -1.17
SHP1	P34223	RBS1	YDL189W	1374 nt		7.75	□□□□□ -1.17
SHP1	P34223	YPL136W	YPL136W	369 nt		7.75	□□□□□ -1.17
SHP1	P34223	ASR1	YPR093C	867 nt		7.75	□□□□□ -1.17
SHP1	P34223	SUF3	tG(CCC)D	72 nt		7.74	□□□□□ -1.17
SHP1	P34223	LCL3	YGL085W	825 nt		7.74	□□□□□ -1.17
SHP1	P34223	ILV6	YCL009C	930 nt		7.74	□□□□□ -1.17
SHP1	P34223	YBL113C	YBL113C	2379 nt		7.74	□□□□□ -1.17
SHP1	P34223	ERG24	YNL280C	1317 nt		7.73	□□□□□ -1.17
SHP1	P34223	MEX67	YPL169C	1800 nt		7.73	□□□□□ -1.17
SHP1	P34223	LSC1	YOR142W	990 nt		7.72	□□□□□ -1.17
SHP1	P34223	ERG27	YLR100W	1044 nt		7.71	□□□□□ -1.18
SHP1	P34223	PGI1	YBR196C	1665 nt		7.7	□□□□□ -1.18
SHP1	P34223	YLL058W	YLL058W	1728 nt		7.7	□□□□□ -1.18
SHP1	P34223	DRE2	YKR071C	1047 nt		7.7	□□□□□ -1.18
SHP1	P34223	TCB1	YOR086C	3561 nt		7.7	□□□□□ -1.18
SHP1	P34223	SAL1	YNL083W	1485 nt		7.69	□□□□□ -1.18
SHP1	P34223	YGL260W	YGL260W	231 nt		7.69	□□□□□ -1.18
SHP1	P34223	YMR252C	YMR252C	405 nt		7.69	□□□□□ -1.18
SHP1	P34223	NTG2	YOL043C	1143 nt		7.69	□□□□□ -1.18
SHP1	P34223	RSC9	YML127W	1746 nt		7.69	□□□□□ -1.18
SHP1	P34223	NUP49	YGL172W	1419 nt		7.69	□□□□□ -1.18
SHP1	P34223	TPI1	YDR050C	747 nt		7.68	□□□□□ -1.18
SHP1	P34223	IMG1	YCR046C	510 nt		7.67	□□□□□ -1.18
SHP1	P34223	NSG2	YNL156C	900 nt		7.67	□□□□□ -1.18
SHP1	P34223	SGF73	YGL066W	1974 nt		7.66	□□□□□ -1.18
SHP1	P34223	YIP4	YGL198W	708 nt		7.66	□□□□□ -1.18
SHP1	P34223	YOL099C	YOL099C	492 nt		7.66	□□□□□ -1.18
SHP1	P34223	RTC2	YBR147W	891 nt		7.66	□□□□□ -1.18
SHP1	P34223	CDC7	YDL017W	1524 nt		7.66	□□□□□ -1.18
SHP1	P34223	YCR049C	YCR049C	447 nt		7.65	□□□□□ -1.18
SHP1	P34223	ASF1	YJL115W	840 nt		7.65	□□□□□ -1.18
SHP1	P34223	YLR030W	YLR030W	792 nt		7.65	□□□□□ -1.18
SHP1	P34223	PMT7	YDR307W	1989 nt		7.64	□□□□□ -1.19
SHP1	P34223	YBR113W	YBR113W	483 nt		7.64	□□□□□ -1.19
SHP1	P34223	ADE5,7	YGL234W	2409 nt		7.63	□□□□□ -1.19
SHP1	P34223	LPD1	YFL018C	1500 nt		7.63	□□□□□ -1.19
SHP1	P34223	FYV1	YDR024W	486 nt		7.63	□□□□□ -1.19
SHP1	P34223	YDR327W	YDR327W	327 nt		7.63	□□□□□ -1.19
SHP1	P34223	DUS3	YLR401C	2007 nt		7.62	□□□□□ -1.19
SHP1	P34223	UFD1	YGR048W	1086 nt		7.62	□□□□□ -1.19
SHP1	P34223	FMO1	YHR176W	1299 nt		7.62	□□□□□ -1.19
SHP1	P34223	YKL147C	YKL147C	618 nt		7.62	□□□□□ -1.19
SHP1	P34223	QRI5	YLR204W	336 nt		7.62	□□□□□ -1.19
SHP1	P34223	TAF9	YMR236W	474 nt		7.62	□□□□□ -1.19
SHP1	P34223	MRPS18	YNL306W	654 nt		7.62	□□□□□ -1.19
SHP1	P34223	MCM5	YLR274W	2328 nt		7.62	□□□□□ -1.19
SHP1	P34223	YAL045C	YAL045C	309 nt		7.61	□□□□□ -1.19
SHP1	P34223	RPL43A	YPR043W	279 nt		7.61	□□□□□ -1.19
SHP1	P34223	MSC3	YLR219W	2187 nt		7.61	□□□□□ -1.19
SHP1	P34223	ICP55	YER078C	1536 nt		7.61	□□□□□ -1.19
SHP1	P34223	YDR387C	YDR387C	1668 nt		7.6	□□□□□ -1.19
SHP1	P34223	ALR1	YOL130W	2580 nt		7.6	□□□□□ -1.19
SHP1	P34223	YEL075W-A	YEL075W-A	612 nt		7.6	□□□□□ -1.19
SHP1	P34223	YLR361C-A	YLR361C-A	297 nt		7.6	□□□□□ -1.19
SHP1	P34223	YLR463C	YLR463C	552 nt		7.6	□□□□□ -1.19
SHP1	P34223	RSC4	YKR008W	1878 nt		7.6	□□□□□ -1.19
SHP1	P34223	GCG1	YER163C	699 nt		7.59	□□□□□ -1.19
SHP1	P34223	MDH2	YOL126C	1134 nt		7.58	□□□□□ -1.2
SHP1	P34223	LIP5	YOR196C	1245 nt		7.58	□□□□□ -1.2
SHP1	P34223	CDC1	YDR182W	1476 nt		7.56	□□□□□ -1.2
SHP1	P34223	OSW2	YLR054C	2175 nt		7.56	□□□□□ -1.2
SHP1	P34223	YDR306C	YDR306C	1437 nt		7.56	□□□□□ -1.2
SHP1	P34223	YGL102C	YGL102C	429 nt		7.56	□□□□□ -1.2
SHP1	P34223	YLL056C	YLL056C	897 nt		7.56	□□□□□ -1.2
SHP1	P34223	PRI1	YIR008C	1230 nt		7.55	□□□□□ -1.2
SHP1	P34223	YML018C	YML018C	1182 nt		7.55	□□□□□ -1.2
SHP1	P34223	CTA1	YDR256C	1548 nt		7.54	□□□□□ -1.2
SHP1	P34223	YEL034C-A	YEL034C-A	603 nt		7.54	□□□□□ -1.2
SHP1	P34223	ERR1	YOR393W	1314 nt		7.53	□□□□□ -1.2
SHP1	P34223	ERR2	YPL281C	1314 nt		7.53	□□□□□ -1.2
SHP1	P34223	HPT1	YDR399W	666 nt		7.53	□□□□□ -1.2
SHP1	P34223	REC107	YJR021C	945 nt		7.53	□□□□□ -1.2
SHP1	P34223	YKL102C	YKL102C	306 nt		7.53	□□□□□ -1.2
SHP1	P34223	TSR2	YLR435W	618 nt		7.53	□□□□□ -1.2
SHP1	P34223	RTG2	YGL252C	1767 nt		7.53	□□□□□ -1.2
SHP1	P34223	ADE2	YOR128C	1716 nt		7.52	□□□□□ -1.2
SHP1	P34223	ERG8	YMR220W	1356 nt		7.52	□□□□□ -1.21
SHP1	P34223	RRP9	YPR137W	1722 nt		7.52	□□□□□ -1.21
SHP1	P34223	YDR187C	YDR187C	519 nt		7.51	□□□□□ -1.21
SHP1	P34223	YKL077W	YKL077W	1179 nt		7.51	□□□□□ -1.21
SHP1	P34223	MAM3	YOL060C	2121 nt		7.51	□□□□□ -1.21
SHP1	P34223	MSS51	YLR203C	1311 nt		7.51	□□□□□ -1.21
SHP1	P34223	SPG5	YMR191W	1122 nt		7.5	□□□□□ -1.21
SHP1	P34223	PHO85	YPL031C	918 nt		7.5	□□□□□ -1.21
SHP1	P34223	SMX3	YPR182W	261 nt		7.5	□□□□□ -1.21
SHP1	P34223	YLR173W	YLR173W	1827 nt		7.5	□□□□□ -1.21
SHP1	P34223	MRPS28	YDR337W	861 nt		7.49	□□□□□ -1.21
SHP1	P34223	GNA1	YFL017C	480 nt		7.49	□□□□□ -1.21
SHP1	P34223	GTS1	YGL181W	1191 nt		7.49	□□□□□ -1.21
SHP1	P34223	THR1	YHR025W	1074 nt		7.49	□□□□□ -1.21
SHP1	P34223	OM45	YIL136W	1182 nt		7.49	□□□□□ -1.21
SHP1	P34223	YKR045C	YKR045C	552 nt		7.49	□□□□□ -1.21
SHP1	P34223	YNL092W	YNL092W	1203 nt		7.49	□□□□□ -1.21
SHP1	P34223	HIS1	YER055C	894 nt		7.48	□□□□□ -1.21
SHP1	P34223	VBA5	YKR105C	1749 nt		7.48	□□□□□ -1.21
SHP1	P34223	SEC62	YPL094C	825 nt		7.48	□□□□□ -1.21
SHP1	P34223	MED6	YHR058C	888 nt		7.47	□□□□□ -1.21

Retrieved 100 of 7,029 protein–RNA pairs in 41.3 ms