Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Msh3P13705 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
Msh3P13705 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC25.28■■□□□ 1.64
Msh3P13705 Mir3960-201ENSMUST00000198213 73 ntBASIC25.28■■□□□ 1.64
Msh3P13705 Gm45364-201ENSMUST00000210883 159 ntBASIC25.28■■□□□ 1.64
Msh3P13705 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Msh3P13705 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC25.28■■□□□ 1.64
Msh3P13705 Gm12818-201ENSMUST00000117562 1349 ntBASIC25.28■■□□□ 1.64
Msh3P13705 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC25.27■■□□□ 1.64
Msh3P13705 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
Msh3P13705 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
Msh3P13705 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
Msh3P13705 AC122317.2-201ENSMUST00000218708 1248 ntBASIC25.25■■□□□ 1.63
Msh3P13705 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC25.25■■□□□ 1.63
Msh3P13705 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC25.25■■□□□ 1.63
Msh3P13705 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
Msh3P13705 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
Msh3P13705 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
Msh3P13705 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Msh3P13705 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Msh3P13705 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC25.23■■□□□ 1.63
Msh3P13705 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC25.23■■□□□ 1.63
Msh3P13705 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC25.23■■□□□ 1.63
Msh3P13705 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
Msh3P13705 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Msh3P13705 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Msh3P13705 AC167019.3-201ENSMUST00000228225 1266 ntBASIC25.22■■□□□ 1.63
Msh3P13705 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
Msh3P13705 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Msh3P13705 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC25.21■■□□□ 1.63
Msh3P13705 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC25.21■■□□□ 1.63
Msh3P13705 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC25.21■■□□□ 1.63
Msh3P13705 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
Msh3P13705 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
Msh3P13705 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC25.2■■□□□ 1.62
Msh3P13705 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC25.2■■□□□ 1.62
Msh3P13705 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC25.19■■□□□ 1.62
Msh3P13705 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC25.19■■□□□ 1.62
Msh3P13705 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
Msh3P13705 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
Msh3P13705 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
Msh3P13705 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
Msh3P13705 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC25.18■■□□□ 1.62
Msh3P13705 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
Msh3P13705 AC153911.1-201ENSMUST00000220378 758 ntBASIC25.18■■□□□ 1.62
Msh3P13705 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
Msh3P13705 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
Msh3P13705 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC25.16■■□□□ 1.62
Msh3P13705 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC25.16■■□□□ 1.62
Msh3P13705 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC25.16■■□□□ 1.62
Msh3P13705 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC25.16■■□□□ 1.62
Msh3P13705 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC25.16■■□□□ 1.62
Msh3P13705 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC25.16■■□□□ 1.62
Msh3P13705 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Msh3P13705 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC25.16■■□□□ 1.62
Msh3P13705 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC25.15■■□□□ 1.62
Msh3P13705 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
Msh3P13705 Il17rd-202ENSMUST00000223942 2186 ntBASIC25.15■■□□□ 1.62
Msh3P13705 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC25.14■■□□□ 1.62
Msh3P13705 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC25.12■■□□□ 1.61
Msh3P13705 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
Msh3P13705 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
Msh3P13705 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC25.1■■□□□ 1.61
Msh3P13705 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC25.1■■□□□ 1.61
Msh3P13705 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
Msh3P13705 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC25.09■■□□□ 1.61
Msh3P13705 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
Msh3P13705 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
Msh3P13705 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
Msh3P13705 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Msh3P13705 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Msh3P13705 Pkd1-207ENSMUST00000228550 1050 ntBASIC25.06■■□□□ 1.6
Msh3P13705 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC25.05■■□□□ 1.6
Msh3P13705 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC25.05■■□□□ 1.6
Msh3P13705 Terc-201ENSMUST00000082862 423 ntBASIC25.05■■□□□ 1.6
Msh3P13705 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC25.05■■□□□ 1.6
Msh3P13705 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
Msh3P13705 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC25.04■■□□□ 1.6
Msh3P13705 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Msh3P13705 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
Msh3P13705 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
Msh3P13705 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Msh3P13705 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
Msh3P13705 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Msh3P13705 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Msh3P13705 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC25.02■■□□□ 1.6
Msh3P13705 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC25.02■■□□□ 1.6
Msh3P13705 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Msh3P13705 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC25.01■■□□□ 1.59
Msh3P13705 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC25■■□□□ 1.59
Msh3P13705 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC25■■□□□ 1.59
Msh3P13705 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC25■■□□□ 1.59
Msh3P13705 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC25■■□□□ 1.59
Msh3P13705 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Msh3P13705 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC24.99■■□□□ 1.59
Msh3P13705 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC24.99■■□□□ 1.59
Msh3P13705 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC24.99■■□□□ 1.59
Msh3P13705 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC24.99■■□□□ 1.59
Msh3P13705 AC164433.2-201ENSMUST00000226346 1701 ntBASIC24.99■■□□□ 1.59
Msh3P13705 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
Retrieved 100 of 76,532 protein–RNA pairs in 26.4 ms