Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
Col1a1P11087 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
Col1a1P11087 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC27.49■■□□□ 1.99
Col1a1P11087 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC27.49■■□□□ 1.99
Col1a1P11087 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
Col1a1P11087 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
Col1a1P11087 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
Col1a1P11087 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC27.48■■□□□ 1.99
Col1a1P11087 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC27.48■■□□□ 1.99
Col1a1P11087 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
Col1a1P11087 Gm43566-201ENSMUST00000196851 808 ntBASIC27.48■■□□□ 1.99
Col1a1P11087 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC27.48■■□□□ 1.99
Col1a1P11087 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
Col1a1P11087 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
Col1a1P11087 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
Col1a1P11087 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC27.46■■□□□ 1.99
Col1a1P11087 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC27.45■■□□□ 1.99
Col1a1P11087 Gm37847-201ENSMUST00000192163 1497 ntBASIC27.45■■□□□ 1.99
Col1a1P11087 Gm31748-201ENSMUST00000194938 1497 ntBASIC27.45■■□□□ 1.99
Col1a1P11087 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
Col1a1P11087 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
Col1a1P11087 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC27.43■■□□□ 1.98
Col1a1P11087 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC27.43■■□□□ 1.98
Col1a1P11087 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
Col1a1P11087 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC27.43■■□□□ 1.98
Col1a1P11087 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC27.43■■□□□ 1.98
Col1a1P11087 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
Col1a1P11087 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
Col1a1P11087 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC27.41■■□□□ 1.98
Col1a1P11087 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
Col1a1P11087 AC093043.1-201ENSMUST00000226700 898 ntBASIC27.39■■□□□ 1.98
Col1a1P11087 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
Col1a1P11087 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
Col1a1P11087 Gm43592-201ENSMUST00000196922 1165 ntBASIC27.38■■□□□ 1.97
Col1a1P11087 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC27.38■■□□□ 1.97
Col1a1P11087 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
Col1a1P11087 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC27.38■■□□□ 1.97
Col1a1P11087 Gm13238-201ENSMUST00000117655 780 ntBASIC27.38■■□□□ 1.97
Col1a1P11087 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC27.38■■□□□ 1.97
Col1a1P11087 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC27.37■■□□□ 1.97
Col1a1P11087 Gm45444-201ENSMUST00000211394 898 ntBASIC27.37■■□□□ 1.97
Col1a1P11087 Rps24-207ENSMUST00000224568 714 ntBASIC27.37■■□□□ 1.97
Col1a1P11087 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC27.36■■□□□ 1.97
Col1a1P11087 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC27.36■■□□□ 1.97
Col1a1P11087 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC27.35■■□□□ 1.97
Col1a1P11087 Gm15820-201ENSMUST00000201566 728 ntBASIC27.35■■□□□ 1.97
Col1a1P11087 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
Col1a1P11087 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC27.35■■□□□ 1.97
Col1a1P11087 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
Col1a1P11087 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
Col1a1P11087 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC27.34■■□□□ 1.97
Col1a1P11087 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
Col1a1P11087 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
Col1a1P11087 Nsd1-203ENSMUST00000224156 1149 ntBASIC27.33■■□□□ 1.97
Col1a1P11087 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC27.32■■□□□ 1.96
Col1a1P11087 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
Col1a1P11087 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
Col1a1P11087 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
Col1a1P11087 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC27.31■■□□□ 1.96
Col1a1P11087 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
Col1a1P11087 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
Col1a1P11087 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC27.29■■□□□ 1.96
Col1a1P11087 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
Col1a1P11087 Amer2-203ENSMUST00000225247 2662 ntBASIC27.28■■□□□ 1.96
Col1a1P11087 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC27.28■■□□□ 1.96
Col1a1P11087 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC27.27■■□□□ 1.96
Col1a1P11087 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC27.27■■□□□ 1.96
Col1a1P11087 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
Col1a1P11087 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC27.26■■□□□ 1.96
Col1a1P11087 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
Col1a1P11087 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
Col1a1P11087 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
Col1a1P11087 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC27.26■■□□□ 1.95
Col1a1P11087 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC27.25■■□□□ 1.95
Col1a1P11087 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
Col1a1P11087 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
Col1a1P11087 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC27.25■■□□□ 1.95
Col1a1P11087 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC27.24■■□□□ 1.95
Col1a1P11087 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC27.23■■□□□ 1.95
Col1a1P11087 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC27.23■■□□□ 1.95
Col1a1P11087 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
Col1a1P11087 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC27.23■■□□□ 1.95
Col1a1P11087 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC27.23■■□□□ 1.95
Col1a1P11087 Gm45102-201ENSMUST00000207427 857 ntBASIC27.23■■□□□ 1.95
Col1a1P11087 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC27.23■■□□□ 1.95
Col1a1P11087 Gm4419-202ENSMUST00000226239 1431 ntBASIC27.22■■□□□ 1.95
Col1a1P11087 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
Col1a1P11087 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC27.22■■□□□ 1.95
Col1a1P11087 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
Col1a1P11087 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
Col1a1P11087 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
Col1a1P11087 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC27.21■■□□□ 1.95
Col1a1P11087 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC27.21■■□□□ 1.95
Col1a1P11087 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC27.2■■□□□ 1.95
Col1a1P11087 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
Col1a1P11087 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
Col1a1P11087 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
Col1a1P11087 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC27.19■■□□□ 1.94
Col1a1P11087 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
Col1a1P11087 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC27.19■■□□□ 1.94
Retrieved 100 of 76,532 protein–RNA pairs in 16 ms