Protein–RNA interactions for Protein: A0A0B4J1H3

Trbv16, T cell receptor beta, variable 16 (Fragment), mousemouse

Predictions only

Length 115 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv16A0A0B4J1H3 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trbv16A0A0B4J1H3 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Trbv16A0A0B4J1H3 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Trbv16A0A0B4J1H3 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trbv16A0A0B4J1H3 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trbv16A0A0B4J1H3 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Trbv16A0A0B4J1H3 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trbv16A0A0B4J1H3 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Trbv16A0A0B4J1H3 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Trbv16A0A0B4J1H3 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trbv16A0A0B4J1H3 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trbv16A0A0B4J1H3 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Trbv16A0A0B4J1H3 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trbv16A0A0B4J1H3 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trbv16A0A0B4J1H3 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trbv16A0A0B4J1H3 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trbv16A0A0B4J1H3 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
Trbv16A0A0B4J1H3 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Trbv16A0A0B4J1H3 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trbv16A0A0B4J1H3 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trbv16A0A0B4J1H3 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC16.4■□□□□ 0.22
Trbv16A0A0B4J1H3 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trbv16A0A0B4J1H3 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trbv16A0A0B4J1H3 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trbv16A0A0B4J1H3 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.22
Trbv16A0A0B4J1H3 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Trbv16A0A0B4J1H3 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
Trbv16A0A0B4J1H3 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trbv16A0A0B4J1H3 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Trbv16A0A0B4J1H3 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trbv16A0A0B4J1H3 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Trbv16A0A0B4J1H3 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Trbv16A0A0B4J1H3 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Trbv16A0A0B4J1H3 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Trbv16A0A0B4J1H3 Gm37136-201ENSMUST00000194368 194 ntBASIC16.38■□□□□ 0.21
Trbv16A0A0B4J1H3 Nkain2-201ENSMUST00000092602 558 ntBASIC16.38■□□□□ 0.21
Trbv16A0A0B4J1H3 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Trbv16A0A0B4J1H3 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trbv16A0A0B4J1H3 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Trbv16A0A0B4J1H3 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trbv16A0A0B4J1H3 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC16.38■□□□□ 0.21
Trbv16A0A0B4J1H3 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
Trbv16A0A0B4J1H3 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trbv16A0A0B4J1H3 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC16.37■□□□□ 0.21
Trbv16A0A0B4J1H3 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trbv16A0A0B4J1H3 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
Trbv16A0A0B4J1H3 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC16.36■□□□□ 0.21
Trbv16A0A0B4J1H3 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Trbv16A0A0B4J1H3 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC16.35■□□□□ 0.21
Trbv16A0A0B4J1H3 Gm17641-201ENSMUST00000166328 2350 ntBASIC16.35■□□□□ 0.21
Trbv16A0A0B4J1H3 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Trbv16A0A0B4J1H3 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC16.35■□□□□ 0.21
Trbv16A0A0B4J1H3 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Trbv16A0A0B4J1H3 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trbv16A0A0B4J1H3 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Trbv16A0A0B4J1H3 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trbv16A0A0B4J1H3 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trbv16A0A0B4J1H3 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC16.34■□□□□ 0.21
Trbv16A0A0B4J1H3 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trbv16A0A0B4J1H3 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC16.34■□□□□ 0.21
Trbv16A0A0B4J1H3 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trbv16A0A0B4J1H3 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trbv16A0A0B4J1H3 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC16.33■□□□□ 0.2
Trbv16A0A0B4J1H3 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC16.33■□□□□ 0.2
Trbv16A0A0B4J1H3 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Trbv16A0A0B4J1H3 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trbv16A0A0B4J1H3 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trbv16A0A0B4J1H3 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trbv16A0A0B4J1H3 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trbv16A0A0B4J1H3 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trbv16A0A0B4J1H3 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trbv16A0A0B4J1H3 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trbv16A0A0B4J1H3 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trbv16A0A0B4J1H3 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Trbv16A0A0B4J1H3 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trbv16A0A0B4J1H3 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Trbv16A0A0B4J1H3 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Trbv16A0A0B4J1H3 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trbv16A0A0B4J1H3 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Trbv16A0A0B4J1H3 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trbv16A0A0B4J1H3 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trbv16A0A0B4J1H3 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trbv16A0A0B4J1H3 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
Trbv16A0A0B4J1H3 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trbv16A0A0B4J1H3 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trbv16A0A0B4J1H3 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trbv16A0A0B4J1H3 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trbv16A0A0B4J1H3 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trbv16A0A0B4J1H3 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trbv16A0A0B4J1H3 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trbv16A0A0B4J1H3 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trbv16A0A0B4J1H3 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trbv16A0A0B4J1H3 Gm42809-201ENSMUST00000198429 1138 ntBASIC16.27■□□□□ 0.2
Trbv16A0A0B4J1H3 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Trbv16A0A0B4J1H3 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Trbv16A0A0B4J1H3 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC16.26■□□□□ 0.19
Trbv16A0A0B4J1H3 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trbv16A0A0B4J1H3 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
Trbv16A0A0B4J1H3 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trbv16A0A0B4J1H3 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC16.25■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 35.3 ms