Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trbv1A0A0B4J1G7 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trbv1A0A0B4J1G7 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Trbv1A0A0B4J1G7 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trbv1A0A0B4J1G7 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trbv1A0A0B4J1G7 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trbv1A0A0B4J1G7 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trbv1A0A0B4J1G7 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trbv1A0A0B4J1G7 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Trbv1A0A0B4J1G7 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC17.73■□□□□ 0.43
Trbv1A0A0B4J1G7 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trbv1A0A0B4J1G7 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trbv1A0A0B4J1G7 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trbv1A0A0B4J1G7 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC17.72■□□□□ 0.43
Trbv1A0A0B4J1G7 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trbv1A0A0B4J1G7 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trbv1A0A0B4J1G7 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trbv1A0A0B4J1G7 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
Trbv1A0A0B4J1G7 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trbv1A0A0B4J1G7 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trbv1A0A0B4J1G7 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trbv1A0A0B4J1G7 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trbv1A0A0B4J1G7 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trbv1A0A0B4J1G7 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trbv1A0A0B4J1G7 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trbv1A0A0B4J1G7 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trbv1A0A0B4J1G7 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trbv1A0A0B4J1G7 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Trbv1A0A0B4J1G7 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Trbv1A0A0B4J1G7 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trbv1A0A0B4J1G7 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
Trbv1A0A0B4J1G7 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trbv1A0A0B4J1G7 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trbv1A0A0B4J1G7 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trbv1A0A0B4J1G7 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trbv1A0A0B4J1G7 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trbv1A0A0B4J1G7 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trbv1A0A0B4J1G7 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Trbv1A0A0B4J1G7 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Trbv1A0A0B4J1G7 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trbv1A0A0B4J1G7 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trbv1A0A0B4J1G7 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Trbv1A0A0B4J1G7 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Trbv1A0A0B4J1G7 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Trbv1A0A0B4J1G7 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trbv1A0A0B4J1G7 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trbv1A0A0B4J1G7 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trbv1A0A0B4J1G7 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Trbv1A0A0B4J1G7 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Trbv1A0A0B4J1G7 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trbv1A0A0B4J1G7 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
Trbv1A0A0B4J1G7 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC17.65■□□□□ 0.42
Trbv1A0A0B4J1G7 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC17.65■□□□□ 0.42
Trbv1A0A0B4J1G7 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trbv1A0A0B4J1G7 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trbv1A0A0B4J1G7 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trbv1A0A0B4J1G7 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trbv1A0A0B4J1G7 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trbv1A0A0B4J1G7 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trbv1A0A0B4J1G7 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trbv1A0A0B4J1G7 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trbv1A0A0B4J1G7 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Trbv1A0A0B4J1G7 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trbv1A0A0B4J1G7 Dmtn-209ENSMUST00000228295 2572 ntBASIC17.64■□□□□ 0.41
Trbv1A0A0B4J1G7 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trbv1A0A0B4J1G7 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Trbv1A0A0B4J1G7 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Trbv1A0A0B4J1G7 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Trbv1A0A0B4J1G7 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC17.63■□□□□ 0.41
Trbv1A0A0B4J1G7 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Trbv1A0A0B4J1G7 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trbv1A0A0B4J1G7 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Trbv1A0A0B4J1G7 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Trbv1A0A0B4J1G7 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Trbv1A0A0B4J1G7 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC17.62■□□□□ 0.41
Trbv1A0A0B4J1G7 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
Trbv1A0A0B4J1G7 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Trbv1A0A0B4J1G7 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Trbv1A0A0B4J1G7 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trbv1A0A0B4J1G7 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trbv1A0A0B4J1G7 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trbv1A0A0B4J1G7 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Trbv1A0A0B4J1G7 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trbv1A0A0B4J1G7 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trbv1A0A0B4J1G7 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trbv1A0A0B4J1G7 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trbv1A0A0B4J1G7 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trbv1A0A0B4J1G7 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trbv1A0A0B4J1G7 Gm42699-201ENSMUST00000198104 1657 ntBASIC17.6■□□□□ 0.41
Trbv1A0A0B4J1G7 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trbv1A0A0B4J1G7 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
Trbv1A0A0B4J1G7 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trbv1A0A0B4J1G7 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Trbv1A0A0B4J1G7 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trbv1A0A0B4J1G7 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trbv1A0A0B4J1G7 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trbv1A0A0B4J1G7 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Trbv1A0A0B4J1G7 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trbv1A0A0B4J1G7 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trbv1A0A0B4J1G7 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 16.8 ms