Protein–RNA interactions for Protein: A0A075B5Z8

Trav6-1, T cell receptor alpha variable 6-1 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-1A0A075B5Z8 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC18.28■□□□□ 0.52
Trav6-1A0A075B5Z8 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trav6-1A0A075B5Z8 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trav6-1A0A075B5Z8 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
Trav6-1A0A075B5Z8 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trav6-1A0A075B5Z8 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trav6-1A0A075B5Z8 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trav6-1A0A075B5Z8 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trav6-1A0A075B5Z8 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trav6-1A0A075B5Z8 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trav6-1A0A075B5Z8 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Trav6-1A0A075B5Z8 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
Trav6-1A0A075B5Z8 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Trav6-1A0A075B5Z8 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trav6-1A0A075B5Z8 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trav6-1A0A075B5Z8 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trav6-1A0A075B5Z8 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trav6-1A0A075B5Z8 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trav6-1A0A075B5Z8 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trav6-1A0A075B5Z8 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trav6-1A0A075B5Z8 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trav6-1A0A075B5Z8 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trav6-1A0A075B5Z8 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC18.25■□□□□ 0.51
Trav6-1A0A075B5Z8 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC18.25■□□□□ 0.51
Trav6-1A0A075B5Z8 Gm45855-201ENSMUST00000212546 880 ntBASIC18.25■□□□□ 0.51
Trav6-1A0A075B5Z8 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trav6-1A0A075B5Z8 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trav6-1A0A075B5Z8 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trav6-1A0A075B5Z8 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trav6-1A0A075B5Z8 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trav6-1A0A075B5Z8 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trav6-1A0A075B5Z8 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trav6-1A0A075B5Z8 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trav6-1A0A075B5Z8 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trav6-1A0A075B5Z8 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC18.23■□□□□ 0.51
Trav6-1A0A075B5Z8 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trav6-1A0A075B5Z8 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC18.23■□□□□ 0.51
Trav6-1A0A075B5Z8 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trav6-1A0A075B5Z8 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Trav6-1A0A075B5Z8 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC18.23■□□□□ 0.51
Trav6-1A0A075B5Z8 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Trav6-1A0A075B5Z8 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trav6-1A0A075B5Z8 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Trav6-1A0A075B5Z8 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
Trav6-1A0A075B5Z8 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
Trav6-1A0A075B5Z8 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC18.22■□□□□ 0.51
Trav6-1A0A075B5Z8 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC18.22■□□□□ 0.51
Trav6-1A0A075B5Z8 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trav6-1A0A075B5Z8 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trav6-1A0A075B5Z8 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trav6-1A0A075B5Z8 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
Trav6-1A0A075B5Z8 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trav6-1A0A075B5Z8 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trav6-1A0A075B5Z8 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trav6-1A0A075B5Z8 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trav6-1A0A075B5Z8 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.5
Trav6-1A0A075B5Z8 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trav6-1A0A075B5Z8 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trav6-1A0A075B5Z8 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Trav6-1A0A075B5Z8 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trav6-1A0A075B5Z8 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trav6-1A0A075B5Z8 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC18.19■□□□□ 0.5
Trav6-1A0A075B5Z8 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Trav6-1A0A075B5Z8 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trav6-1A0A075B5Z8 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trav6-1A0A075B5Z8 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trav6-1A0A075B5Z8 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trav6-1A0A075B5Z8 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
Trav6-1A0A075B5Z8 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trav6-1A0A075B5Z8 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trav6-1A0A075B5Z8 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Trav6-1A0A075B5Z8 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trav6-1A0A075B5Z8 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trav6-1A0A075B5Z8 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trav6-1A0A075B5Z8 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
Trav6-1A0A075B5Z8 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trav6-1A0A075B5Z8 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trav6-1A0A075B5Z8 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trav6-1A0A075B5Z8 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trav6-1A0A075B5Z8 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC18.17■□□□□ 0.5
Trav6-1A0A075B5Z8 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Trav6-1A0A075B5Z8 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
Trav6-1A0A075B5Z8 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trav6-1A0A075B5Z8 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC18.16■□□□□ 0.5
Trav6-1A0A075B5Z8 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Trav6-1A0A075B5Z8 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trav6-1A0A075B5Z8 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Trav6-1A0A075B5Z8 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
Trav6-1A0A075B5Z8 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trav6-1A0A075B5Z8 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trav6-1A0A075B5Z8 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Trav6-1A0A075B5Z8 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trav6-1A0A075B5Z8 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Trav6-1A0A075B5Z8 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trav6-1A0A075B5Z8 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
Trav6-1A0A075B5Z8 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trav6-1A0A075B5Z8 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trav6-1A0A075B5Z8 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Trav6-1A0A075B5Z8 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Trav6-1A0A075B5Z8 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 16.9 ms