Protein–RNA interactions for Protein: P34223

SHP1, UBX domain-containing protein 1, yeastyeast

Predictions only

Length 423 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SHP1P34223 YJL213WYJL213W 996 nt8□□□□□ -1.13
SHP1P34223 CCW12YLR110C 402 nt8□□□□□ -1.13
SHP1P34223 YPR130CYPR130C 408 nt8□□□□□ -1.13
SHP1P34223 YCL049CYCL049C 939 nt8□□□□□ -1.13
SHP1P34223 tD(GUC)BtD(GUC)B 72 nt7.99□□□□□ -1.13
SHP1P34223 tD(GUC)DtD(GUC)D 72 nt7.99□□□□□ -1.13
SHP1P34223 tD(GUC)G1tD(GUC)G1 72 nt7.99□□□□□ -1.13
SHP1P34223 tD(GUC)G2tD(GUC)G2 72 nt7.99□□□□□ -1.13
SHP1P34223 tD(GUC)I1tD(GUC)I1 72 nt7.99□□□□□ -1.13
SHP1P34223 tD(GUC)I2tD(GUC)I2 72 nt7.99□□□□□ -1.13
SHP1P34223 tD(GUC)J1tD(GUC)J1 72 nt7.99□□□□□ -1.13
SHP1P34223 tD(GUC)J2tD(GUC)J2 72 nt7.99□□□□□ -1.13
SHP1P34223 tD(GUC)J3tD(GUC)J3 72 nt7.99□□□□□ -1.13
SHP1P34223 tD(GUC)J4tD(GUC)J4 72 nt7.99□□□□□ -1.13
SHP1P34223 tD(GUC)KtD(GUC)K 72 nt7.99□□□□□ -1.13
SHP1P34223 tD(GUC)L1tD(GUC)L1 72 nt7.99□□□□□ -1.13
SHP1P34223 tD(GUC)L2tD(GUC)L2 72 nt7.99□□□□□ -1.13
SHP1P34223 tD(GUC)MtD(GUC)M 72 nt7.99□□□□□ -1.13
SHP1P34223 tD(GUC)OtD(GUC)O 72 nt7.99□□□□□ -1.13
SHP1P34223 YDR510C-AYDR510C-A 117 nt7.99□□□□□ -1.13
SHP1P34223 CYS4YGR155W 1524 nt7.98□□□□□ -1.13
SHP1P34223 PAM17YKR065C 594 nt7.98□□□□□ -1.13
SHP1P34223 MET13YGL125W 1803 nt7.97□□□□□ -1.13
SHP1P34223 YOL046CYOL046C 675 nt7.96□□□□□ -1.14
SHP1P34223 YPQ2YDR352W 954 nt7.95□□□□□ -1.14
SHP1P34223 RTC4YNL254C 1206 nt7.95□□□□□ -1.14
SHP1P34223 AVL9YLR114C 2295 nt7.95□□□□□ -1.14
SHP1P34223 PET10YKR046C 852 nt7.94□□□□□ -1.14
SHP1P34223 CIT2YCR005C 1383 nt7.94□□□□□ -1.14
SHP1P34223 FCY22YER060W-A 1593 nt7.93□□□□□ -1.14
SHP1P34223 YNR001W-AYNR001W-A 219 nt7.93□□□□□ -1.14
SHP1P34223 SUN4YNL066W 1263 nt7.92□□□□□ -1.14
SHP1P34223 CAR2YLR438W 1275 nt7.91□□□□□ -1.14
SHP1P34223 ORT1YOR130C 879 nt7.91□□□□□ -1.14
SHP1P34223 YJL163CYJL163C 1668 nt7.91□□□□□ -1.14
SHP1P34223 HBS1YKR084C 1836 nt7.91□□□□□ -1.14
SHP1P34223 CIA1YDR267C 993 nt7.9□□□□□ -1.14
SHP1P34223 RPL2AYFR031C-A 765 nt7.9□□□□□ -1.14
SHP1P34223 AIM20YIL158W 615 nt7.9□□□□□ -1.14
SHP1P34223 DUR3YHL016C 2208 nt7.9□□□□□ -1.15
SHP1P34223 GET4YOR164C 939 nt7.89□□□□□ -1.15
SHP1P34223 TUB1YML085C 1344 nt7.88□□□□□ -1.15
SHP1P34223 ERR3YMR323W 1314 nt7.88□□□□□ -1.15
SHP1P34223 CKB1YGL019W 837 nt7.88□□□□□ -1.15
SHP1P34223 YLR184WYLR184W 348 nt7.88□□□□□ -1.15
SHP1P34223 Q0010Q0010 387 nt7.88□□□□□ -1.15
SHP1P34223 PDC5YLR134W 1692 nt7.88□□□□□ -1.15
SHP1P34223 HEM14YER014W 1620 nt7.88□□□□□ -1.15
SHP1P34223 COX15YER141W 1461 nt7.87□□□□□ -1.15
SHP1P34223 OPI7YDR360W 435 nt7.87□□□□□ -1.15
SHP1P34223 RCF2YNR018W 675 nt7.87□□□□□ -1.15
SHP1P34223 SSC1YJR045C 1965 nt7.87□□□□□ -1.15
SHP1P34223 LIA1YJR070C 978 nt7.86□□□□□ -1.15
SHP1P34223 HOC1YJR075W 1191 nt7.86□□□□□ -1.15
SHP1P34223 PLB2YMR006C 2121 nt7.86□□□□□ -1.15
SHP1P34223 YMR074CYMR074C 438 nt7.85□□□□□ -1.15
SHP1P34223 MIM1YOL026C 342 nt7.85□□□□□ -1.15
SHP1P34223 YIL177CYIL177C 5277 nt7.85□□□□□ -1.15
SHP1P34223 MPE1YKL059C 1326 nt7.84□□□□□ -1.15
SHP1P34223 SNA3YJL151C 402 nt7.84□□□□□ -1.15
SHP1P34223 YJR154WYJR154W 1041 nt7.84□□□□□ -1.15
SHP1P34223 YKL153WYKL153W 510 nt7.84□□□□□ -1.15
SHP1P34223 SCS22YBL091C-A 528 nt7.84□□□□□ -1.15
SHP1P34223 FIT2YOR382W 462 nt7.84□□□□□ -1.15
SHP1P34223 DMC1YER179W 1005 nt7.83□□□□□ -1.16
SHP1P34223 MRPL19YNL185C 477 nt7.83□□□□□ -1.16
SHP1P34223 YOR072WYOR072W 315 nt7.83□□□□□ -1.16
SHP1P34223 LEO1YOR123C 1395 nt7.83□□□□□ -1.16
SHP1P34223 DIA4YHR011W 1341 nt7.82□□□□□ -1.16
SHP1P34223 APE4YHR113W 1473 nt7.82□□□□□ -1.16
SHP1P34223 PET117YER058W 324 nt7.82□□□□□ -1.16
SHP1P34223 AGX1YFL030W 1158 nt7.82□□□□□ -1.16
SHP1P34223 HTZ1YOL012C 405 nt7.82□□□□□ -1.16
SHP1P34223 YPR076WYPR076W 375 nt7.82□□□□□ -1.16
SHP1P34223 GPD1YDL022W 1176 nt7.81□□□□□ -1.16
SHP1P34223 MDH1YKL085W 1005 nt7.81□□□□□ -1.16
SHP1P34223 YAH1YPL252C 519 nt7.81□□□□□ -1.16
SHP1P34223 snR4snR4 186 nt7.81□□□□□ -1.16
SHP1P34223 TOP3YLR234W 1971 nt7.8□□□□□ -1.16
SHP1P34223 MAS1YLR163C 1389 nt7.8□□□□□ -1.16
SHP1P34223 AFG3YER017C 2286 nt7.8□□□□□ -1.16
SHP1P34223 SNF7YLR025W 723 nt7.79□□□□□ -1.16
SHP1P34223 FMP40YPL222W 2067 nt7.79□□□□□ -1.16
SHP1P34223 TOM71YHR117W 1920 nt7.78□□□□□ -1.16
SHP1P34223 MDL2YPL270W 2322 nt7.78□□□□□ -1.16
SHP1P34223 PPH21YDL134C 1110 nt7.78□□□□□ -1.16
SHP1P34223 MRPL35YDR322W 1104 nt7.78□□□□□ -1.16
SHP1P34223 YIL029W-AYIL029W-A 372 nt7.78□□□□□ -1.16
SHP1P34223 BRN1YBL097W 2265 nt7.78□□□□□ -1.16
SHP1P34223 CRH1YGR189C 1524 nt7.78□□□□□ -1.16
SHP1P34223 YHR218W-AYHR218W-A 318 nt7.77□□□□□ -1.17
SHP1P34223 AVO2YMR068W 1281 nt7.77□□□□□ -1.17
SHP1P34223 YBL112CYBL112C 318 nt7.77□□□□□ -1.17
SHP1P34223 RUP1YOR138C 2016 nt7.77□□□□□ -1.17
SHP1P34223 RDR1YOR380W 1641 nt7.77□□□□□ -1.17
SHP1P34223 HNM1YGL077C 1692 nt7.76□□□□□ -1.17
SHP1P34223 PAB1YER165W 1734 nt7.76□□□□□ -1.17
SHP1P34223 RPL2BYIL018W 765 nt7.76□□□□□ -1.17
SHP1P34223 IMD1YAR073W 1212 nt7.76□□□□□ -1.17
SHP1P34223 YNR005CYNR005C 405 nt7.76□□□□□ -1.17
Retrieved 100 of 7,029 protein–RNA pairs in 30.2 ms