RNA–Protein interactions for RNA: ENST00000373568.6

HDAC8-205, Transcript of histone deacetylase 8, human

TSL 5

Gene HDAC8, Length 1,037 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC8-205	ENST00000373568	SF3A3	Q12874	501 aa	Known RBP eCLIP	11.98	□□□□□ -0.49	1e-323	■■■■■ 83.9
HDAC8-205	ENST00000373568	SF3B4	Q15427	424 aa	Known RBP eCLIP	11.84	□□□□□ -0.51	4e-73	■■■■■ 236.6
HDAC8-205	ENST00000373568	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	15.21	■□□□□ 0.03	1e-19	■■■■■ 59.4
HDAC8-205	ENST00000373568	SMNDC1	O75940	238 aa	Known RBP eCLIP	11.7	□□□□□ -0.54	1e-16	■■■■■ 35
HDAC8-205	ENST00000373568	PCBP2	Q15366	365 aa	Known RBP eCLIP	12.53	□□□□□ -0.4	1e-8	■■■■■ 36
HDAC8-205	ENST00000373568	PTBP1	P26599	531 aa	Known RBP eCLIP	10.27	□□□□□ -0.77	6e-8	■■■■■ 40
HDAC8-205	ENST00000373568	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	14.08	□□□□□ -0.16	8e-7	■■■■■ 271.7
HDAC8-205	ENST00000373568	QKI	Q96PU8	341 aa	Known RBP eCLIP	13.28	□□□□□ -0.28	1e-6	■■■■□ 21.3
HDAC8-205	ENST00000373568	LARP4	Q71RC2	724 aa	Known RBP eCLIP	12.19	□□□□□ -0.46	1e-6	■■■□□ 19.2
HDAC8-205	ENST00000373568	SF3B1	O75533	1304 aa	Known RBP eCLIP	14.3	□□□□□ -0.12	2e-6	■■■■■ 101.5
HDAC8-205	ENST00000373568	DGCR8	Q8WYQ5	773 aa	Known RBP eCLIP	12.64	□□□□□ -0.39	2e-6	■■■■■ 46.8
HDAC8-205	ENST00000373568	AARS	P49588	968 aa	Known RBP eCLIP	14.28	□□□□□ -0.12	3e-6	■■■■■ 61.8
HDAC8-205	ENST00000373568	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	14.81	□□□□□ -0.04	4e-6	■■■□□ 15.2
HDAC8-205	ENST00000373568	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	17.78	■□□□□ 0.44	5e-6	■■□□□ 11.8
HDAC8-205	ENST00000373568	NSUN2	Q08J23	767 aa	Known RBP eCLIP	13.34	□□□□□ -0.27	1e-5	■■■■□ 24.6

Retrieved 15 of 15 RNA–protein pairs in 5.1 ms