RNA–Protein interactions for RNA: ENST00000358130.6
HMGN5-201, Transcript of high mobility group nucleosome binding domain 5, human
Retrieved 9 of 9 RNA–protein pairs in 8.7 ms
HMGN5-201, Transcript of high mobility group nucleosome binding domain 5, human![human](/images/species-human.png)
APPRIS P2 TSL 2 BASIC
Gene HMGN5, Length 2,126 nt, Biotype protein coding.
RNA | Protein | Prediction (catRAPID) | Interaction (ENCODE eCLIP) | ||||||
---|---|---|---|---|---|---|---|---|---|
Transcript Symbol | Ensembl Transcript ID | Gene | UniProt Accession | Length | Protein Status | Prediction Score | Prediction z-Score | p-Value | Fold Change |
HMGN5-201 | ENST00000358130 | UTP3 | Q9NQZ2 | 479 aa | Known RBP eCLIP | 5.32 | □□□□□ -1.56 | 3e-6 | ■■■■■ 149.1 |
HMGN5-201 | ENST00000358130 | UCHL5 | Q9Y5K5 | 329 aa | Known RBP eCLIP | 3.33 | □□□□□ -1.88 | 2e-15 | ■■■■■ 66.5 |
HMGN5-201 | ENST00000358130 | ZNF800 | Q2TB10 | 664 aa | Predicted RBP eCLIP | 5.51 | □□□□□ -1.53 | 1e-11 | ■■■■■ 60.2 |
HMGN5-201 | ENST00000358130 | PUM1 | Q14671 | 1186 aa | Known RBP eCLIP | 3.73 | □□□□□ -1.81 | 3e-7 | ■■■■■ 40.6 |
HMGN5-201 | ENST00000358130 | BUD13 | Q9BRD0 | 619 aa | Known RBP eCLIP | 4.51 | □□□□□ -1.69 | 1e-10 | ■■■■■ 38.1 |
HMGN5-201 | ENST00000358130 | TRA2A | Q13595 | 282 aa | Known RBP eCLIP | 2.66 | □□□□□ -1.98 | 2e-8 | ■■■■■ 32.6 |
HMGN5-201 | ENST00000358130 | AGGF1 | Q8N302 | 714 aa | eCLIP | 4.91 | □□□□□ -1.62 | 2e-6 | ■■■■□ 23.7 |
HMGN5-201 | ENST00000358130 | CPSF6 | Q16630 | 551 aa | Known RBP eCLIP | 4.59 | □□□□□ -1.67 | 7e-7 | ■■■■□ 21 |
HMGN5-201 | ENST00000358130 | ZNF622 | Q969S3 | 477 aa | Known RBP eCLIP | 3.31 | □□□□□ -1.88 | 3e-6 | ■■□□□ 13.5 |