RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 CCL4L1Q8NHW4 92 aa14.36□□□□□ -0.11
SHKBP1-211ENST00000595945 HIST1H2AHQ96KK5 128 aa14.36□□□□□ -0.11
SHKBP1-211ENST00000595945 CCDC138Q96M89 665 aa14.36□□□□□ -0.11
SHKBP1-211ENST00000595945 PKP4Q99569 1192 aa14.36□□□□□ -0.11
SHKBP1-211ENST00000595945 HIST1H2AJQ99878 128 aa14.36□□□□□ -0.11
SHKBP1-211ENST00000595945 EGFL8Q99944 293 aa14.36□□□□□ -0.11
SHKBP1-211ENST00000595945 H2AFJQ9BTM1 129 aa14.36□□□□□ -0.11
SHKBP1-211ENST00000595945 NSRP1Q9H0G5 558 aaKnown RBP14.36□□□□□ -0.11
SHKBP1-211ENST00000595945 MIR1-1HGQ9H1L0 117 aa14.36□□□□□ -0.11
SHKBP1-211ENST00000595945 OSGEPL1Q9H4B0 414 aa14.36□□□□□ -0.11
SHKBP1-211ENST00000595945 ARL15Q9NXU5 204 aa14.36□□□□□ -0.11
SHKBP1-211ENST00000595945 PSMD13Q9UNM6 376 aa14.36□□□□□ -0.11
SHKBP1-211ENST00000595945 EPB41L3Q9Y2J2 1087 aaPredicted RBP14.36□□□□□ -0.11
SHKBP1-211ENST00000595945 CUL9Q8IWT3 2517 aa14.35□□□□□ -0.11
SHKBP1-211ENST00000595945 KRT87PA6NCN2 255 aa14.35□□□□□ -0.11
SHKBP1-211ENST00000595945 IFRD1O00458 451 aaPredicted RBP14.35□□□□□ -0.11
SHKBP1-211ENST00000595945 E2F3O00716 465 aa14.35□□□□□ -0.11
SHKBP1-211ENST00000595945 BCAT2O15382 392 aaPredicted RBP14.35□□□□□ -0.11
SHKBP1-211ENST00000595945 HSPA4LO95757 839 aa14.35□□□□□ -0.11
SHKBP1-211ENST00000595945 CHRNGP07510 517 aa14.35□□□□□ -0.11
SHKBP1-211ENST00000595945 ITPKAP23677 461 aa14.35□□□□□ -0.11
SHKBP1-211ENST00000595945 AK4P27144 223 aaPredicted RBP14.35□□□□□ -0.11
SHKBP1-211ENST00000595945 RPL10P27635 214 aaKnown RBP14.35□□□□□ -0.11
SHKBP1-211ENST00000595945 MAP4P27816 1152 aaKnown RBP14.35□□□□□ -0.11
SHKBP1-211ENST00000595945 CNR2P34972 360 aa14.35□□□□□ -0.11
SHKBP1-211ENST00000595945 SLC6A12P48065 614 aa14.35□□□□□ -0.11
SHKBP1-211ENST00000595945 HNMTP50135 292 aa14.35□□□□□ -0.11
SHKBP1-211ENST00000595945 FBXO48Q5FWF7 155 aa14.35□□□□□ -0.11
SHKBP1-211ENST00000595945 LYSMD4Q5XG99 296 aa14.35□□□□□ -0.11
SHKBP1-211ENST00000595945 PIGWQ7Z7B1 504 aa14.35□□□□□ -0.11
SHKBP1-211ENST00000595945 DCUN1D3Q8IWE4 304 aa14.35□□□□□ -0.11
SHKBP1-211ENST00000595945 RGL4Q8IZJ4 473 aa14.35□□□□□ -0.11
SHKBP1-211ENST00000595945 OR5K2Q8NHB8 316 aa14.35□□□□□ -0.11
SHKBP1-211ENST00000595945 ZNF473Q8WTR7 871 aaKnown RBP14.35□□□□□ -0.11
SHKBP1-211ENST00000595945 ESAMQ96AP7 390 aa14.35□□□□□ -0.11
SHKBP1-211ENST00000595945 GRAMD1AQ96CP6 724 aa14.35□□□□□ -0.11
SHKBP1-211ENST00000595945 ZC3H10Q96K80 434 aaKnown RBP14.35□□□□□ -0.11
SHKBP1-211ENST00000595945 NSUN5Q96P11 429 aaKnown RBP14.35□□□□□ -0.11
SHKBP1-211ENST00000595945 CD244Q9BZW8 370 aa14.35□□□□□ -0.11
SHKBP1-211ENST00000595945 RABEP2Q9H5N1 569 aa14.35□□□□□ -0.11
SHKBP1-211ENST00000595945 CAAP1Q9H8G2 361 aa14.35□□□□□ -0.11
SHKBP1-211ENST00000595945 ZBTB26Q9HCK0 441 aa14.35□□□□□ -0.11
SHKBP1-211ENST00000595945 PRDM8Q9NQV8 689 aa14.35□□□□□ -0.11
SHKBP1-211ENST00000595945 WWOXQ9NZC7 414 aa14.35□□□□□ -0.11
SHKBP1-211ENST00000595945 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.35□□□□□ -0.11
SHKBP1-211ENST00000595945 SCHIP1Q9P0W5 487 aaPredicted RBP14.35□□□□□ -0.11
SHKBP1-211ENST00000595945 STOX2Q9P2F5 926 aaPredicted RBP14.35□□□□□ -0.11
SHKBP1-211ENST00000595945 TBC1D29Q9UFV1 150 aa14.35□□□□□ -0.11
SHKBP1-211ENST00000595945 ASF1AQ9Y294 204 aa14.35□□□□□ -0.11
SHKBP1-211ENST00000595945 RAP2CQ9Y3L5 183 aa14.35□□□□□ -0.11
SHKBP1-211ENST00000595945 A0A0C4DFX4 3053 aa14.34□□□□□ -0.11
SHKBP1-211ENST00000595945 UBFD1O14562 309 aaKnown RBP14.34□□□□□ -0.11
SHKBP1-211ENST00000595945 SUPT7LO94864 414 aa14.34□□□□□ -0.11
SHKBP1-211ENST00000595945 EML2O95834 649 aa14.34□□□□□ -0.11
SHKBP1-211ENST00000595945 CSF2P04141 144 aa14.34□□□□□ -0.11
SHKBP1-211ENST00000595945 SP9P0CG40 484 aa14.34□□□□□ -0.11
SHKBP1-211ENST00000595945 NME1P15531 152 aaKnown RBP14.34□□□□□ -0.11
SHKBP1-211ENST00000595945 IMPA1P29218 277 aa14.34□□□□□ -0.11
SHKBP1-211ENST00000595945 ACTR1BP42025 376 aa14.34□□□□□ -0.11
SHKBP1-211ENST00000595945 HSPA7P48741 367 aa14.34□□□□□ -0.11
SHKBP1-211ENST00000595945 DHPSP49366 369 aaPredicted RBP14.34□□□□□ -0.11
SHKBP1-211ENST00000595945 BLKP51451 505 aa14.34□□□□□ -0.11
SHKBP1-211ENST00000595945 ACTR1AP61163 376 aa14.34□□□□□ -0.11
SHKBP1-211ENST00000595945 CLCQ05315 142 aa14.34□□□□□ -0.11
SHKBP1-211ENST00000595945 ILF3Q12906 894 aaKnown RBP eCLIP14.34□□□□□ -0.11
SHKBP1-211ENST00000595945 CLCA4Q14CN2 919 aa14.34□□□□□ -0.11
SHKBP1-211ENST00000595945 RPE65Q16518 533 aa14.34□□□□□ -0.11
SHKBP1-211ENST00000595945 ZNF542PQ5EBM4 170 aa14.34□□□□□ -0.11
SHKBP1-211ENST00000595945 LRRC70Q7Z2Q7 622 aa14.34□□□□□ -0.11
SHKBP1-211ENST00000595945 CPLX4Q7Z7G2 160 aa14.34□□□□□ -0.11
SHKBP1-211ENST00000595945 CRLF3Q8IUI8 442 aa14.34□□□□□ -0.11
SHKBP1-211ENST00000595945 TBC1D21Q8IYX1 336 aa14.34□□□□□ -0.11
SHKBP1-211ENST00000595945 ZBTB44Q8NCP5 570 aa14.34□□□□□ -0.11
SHKBP1-211ENST00000595945 PHC3Q8NDX5 983 aa14.34□□□□□ -0.11
SHKBP1-211ENST00000595945 OR5AR1Q8NGP9 310 aa14.34□□□□□ -0.11
SHKBP1-211ENST00000595945 OR9A1PQ8NGU1 263 aa14.34□□□□□ -0.11
SHKBP1-211ENST00000595945 ATL1Q8WXF7 558 aa14.34□□□□□ -0.11
SHKBP1-211ENST00000595945 SKA1Q96BD8 255 aa14.34□□□□□ -0.11
SHKBP1-211ENST00000595945 C12orf66Q96MD2 445 aa14.34□□□□□ -0.11
SHKBP1-211ENST00000595945 GSDMCQ9BYG8 508 aa14.34□□□□□ -0.11
SHKBP1-211ENST00000595945 FAM107BQ9H098 131 aa14.34□□□□□ -0.11
SHKBP1-211ENST00000595945 MVB12BQ9H7P6 319 aa14.34□□□□□ -0.11
SHKBP1-211ENST00000595945 ZSCAN32Q9NX65 697 aa14.34□□□□□ -0.11
SHKBP1-211ENST00000595945 ADAMTS9Q9P2N4 1935 aa14.33□□□□□ -0.11
SHKBP1-211ENST00000595945 A0A1B0GTW7 788 aa14.33□□□□□ -0.12
SHKBP1-211ENST00000595945 PABPN1LA6NDY0 278 aaKnown RBP14.33□□□□□ -0.12
SHKBP1-211ENST00000595945 PDZK1P1A8MUH7 402 aa14.33□□□□□ -0.12
SHKBP1-211ENST00000595945 PPP6CO00743 305 aa14.33□□□□□ -0.12
SHKBP1-211ENST00000595945 SNX3O60493 162 aa14.33□□□□□ -0.12
SHKBP1-211ENST00000595945 STK16O75716 305 aa14.33□□□□□ -0.12
SHKBP1-211ENST00000595945 RPN2P04844 631 aa14.33□□□□□ -0.12
SHKBP1-211ENST00000595945 CELA2BP08218 269 aaPredicted RBP14.33□□□□□ -0.12
SHKBP1-211ENST00000595945 ERGP11308 486 aa14.33□□□□□ -0.12
SHKBP1-211ENST00000595945 MTHFD1P11586 935 aaKnown RBP14.33□□□□□ -0.12
SHKBP1-211ENST00000595945 JUNDP17535 347 aa14.33□□□□□ -0.12
SHKBP1-211ENST00000595945 MPSTP25325 297 aa14.33□□□□□ -0.12
SHKBP1-211ENST00000595945 CSNK1EP49674 416 aaKnown RBP14.33□□□□□ -0.12
SHKBP1-211ENST00000595945 AFF3P51826 1226 aaKnown RBP14.33□□□□□ -0.12
SHKBP1-211ENST00000595945 CDH13P55290 713 aa14.33□□□□□ -0.12
SHKBP1-211ENST00000595945 LCP2Q13094 533 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 112.4 ms