RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 CDYLQ9Y232 598 aa12.62□□□□□ -0.39
CLK3-224ENST00000568605 RAXQ9Y2V3 346 aa12.62□□□□□ -0.39
CLK3-224ENST00000568605 PCDHGA3Q9Y5H0 932 aa12.62□□□□□ -0.39
CLK3-224ENST00000568605 PKD1L2Q7Z442 2459 aa12.62□□□□□ -0.39
CLK3-224ENST00000568605 FREM2Q5SZK8 3169 aa12.61□□□□□ -0.39
CLK3-224ENST00000568605 PMS2P1A4D2B8 440 aa12.61□□□□□ -0.39
CLK3-224ENST00000568605 SRRM3A6NNA2 597 aaPredicted RBP12.61□□□□□ -0.39
CLK3-224ENST00000568605 EIF3FO00303 357 aaPredicted RBP12.61□□□□□ -0.39
CLK3-224ENST00000568605 TP73O15350 636 aa12.61□□□□□ -0.39
CLK3-224ENST00000568605 TLX3O43711 291 aaPredicted RBP12.61□□□□□ -0.39
CLK3-224ENST00000568605 ZBTB11O95625 1053 aaPredicted RBP12.61□□□□□ -0.39
CLK3-224ENST00000568605 CATP04040 527 aaKnown RBP12.61□□□□□ -0.39
CLK3-224ENST00000568605 GSTA2P09210 222 aa12.61□□□□□ -0.39
CLK3-224ENST00000568605 CBSLP0DN79 551 aa12.61□□□□□ -0.39
CLK3-224ENST00000568605 FGF3P11487 239 aaPredicted RBP12.61□□□□□ -0.39
CLK3-224ENST00000568605 POLR2CP19387 275 aaPredicted RBP12.61□□□□□ -0.39
CLK3-224ENST00000568605 CDH3P22223 829 aa12.61□□□□□ -0.39
CLK3-224ENST00000568605 CBSP35520 551 aa12.61□□□□□ -0.39
CLK3-224ENST00000568605 EIF2S3P41091 472 aaKnown RBP12.61□□□□□ -0.39
CLK3-224ENST00000568605 ETV5P41161 510 aa12.61□□□□□ -0.39
CLK3-224ENST00000568605 CARSP49589 748 aaKnown RBP12.61□□□□□ -0.39
CLK3-224ENST00000568605 RGS4P49798 205 aa12.61□□□□□ -0.39
CLK3-224ENST00000568605 SEPHS1P49903 392 aa12.61□□□□□ -0.39
CLK3-224ENST00000568605 RAB28P51157 221 aa12.61□□□□□ -0.39
CLK3-224ENST00000568605 MGAT5Q09328 741 aa12.61□□□□□ -0.39
CLK3-224ENST00000568605 GLE1Q53GS7 698 aaKnown RBP12.61□□□□□ -0.39
CLK3-224ENST00000568605 ZNF789Q5FWF6 425 aa12.61□□□□□ -0.39
CLK3-224ENST00000568605 TMTC4Q5T4D3 741 aa12.61□□□□□ -0.39
CLK3-224ENST00000568605 BROXQ5VW32 411 aa12.61□□□□□ -0.39
CLK3-224ENST00000568605 CNSTQ6PJW8 725 aa12.61□□□□□ -0.39
CLK3-224ENST00000568605 NEK10Q6ZWH5 1172 aa12.61□□□□□ -0.39
CLK3-224ENST00000568605 CCDC25Q86WR0 208 aa12.61□□□□□ -0.39
CLK3-224ENST00000568605 VRK3Q8IV63 474 aa12.61□□□□□ -0.39
CLK3-224ENST00000568605 IGDCC3Q8IVU1 814 aa12.61□□□□□ -0.39
CLK3-224ENST00000568605 UNC5BQ8IZJ1 945 aa12.61□□□□□ -0.39
CLK3-224ENST00000568605 MMGT1Q8N4V1 131 aa12.61□□□□□ -0.39
CLK3-224ENST00000568605 SIDT2Q8NBJ9 832 aaKnown RBP12.61□□□□□ -0.39
CLK3-224ENST00000568605 PHC3Q8NDX5 983 aa12.61□□□□□ -0.39
CLK3-224ENST00000568605 FBXO25Q8TCJ0 367 aa12.61□□□□□ -0.39
CLK3-224ENST00000568605 USP7Q93009 1102 aa12.61□□□□□ -0.39
CLK3-224ENST00000568605 FAM136AQ96C01 138 aa12.61□□□□□ -0.39
CLK3-224ENST00000568605 AARSD1Q9BTE6 412 aaKnown RBP12.61□□□□□ -0.39
CLK3-224ENST00000568605 DPH1Q9BZG8 443 aa12.61□□□□□ -0.39
CLK3-224ENST00000568605 FANCEQ9HB96 536 aa12.61□□□□□ -0.39
CLK3-224ENST00000568605 FBXO8Q9NRD0 319 aa12.61□□□□□ -0.39
CLK3-224ENST00000568605 C1GALT1Q9NS00 363 aa12.61□□□□□ -0.39
CLK3-224ENST00000568605 SOHLH2Q9NX45 425 aa12.61□□□□□ -0.39
CLK3-224ENST00000568605 TAS2R13Q9NYV9 303 aa12.61□□□□□ -0.39
CLK3-224ENST00000568605 TXNDC16Q9P2K2 825 aa12.61□□□□□ -0.39
CLK3-224ENST00000568605 SLC39A10Q9ULF5 831 aa12.61□□□□□ -0.39
CLK3-224ENST00000568605 ICKQ9UPZ9 632 aa12.61□□□□□ -0.39
CLK3-224ENST00000568605 A0A087WV48 116 aa12.6□□□□□ -0.39
CLK3-224ENST00000568605 PIPSLA2A3N6 862 aa12.6□□□□□ -0.39
CLK3-224ENST00000568605 STMND1H3BQB6 276 aa12.6□□□□□ -0.39
CLK3-224ENST00000568605 BTN3A1O00481 513 aa12.6□□□□□ -0.39
CLK3-224ENST00000568605 POLR1CO15160 346 aaPredicted RBP12.6□□□□□ -0.39
CLK3-224ENST00000568605 PRAMEF10O60809 474 aa12.6□□□□□ -0.39
CLK3-224ENST00000568605 SPAG6O75602 509 aa12.6□□□□□ -0.39
CLK3-224ENST00000568605 HAUS5O94927 633 aa12.6□□□□□ -0.39
CLK3-224ENST00000568605 LIPCP11150 499 aa12.6□□□□□ -0.39
CLK3-224ENST00000568605 CCL4P13236 92 aa12.6□□□□□ -0.39
CLK3-224ENST00000568605 NELFEP18615 380 aaKnown RBP12.6□□□□□ -0.39
CLK3-224ENST00000568605 SKIV2L2P42285 1042 aaKnown RBP12.6□□□□□ -0.39
CLK3-224ENST00000568605 ABCG1P45844 678 aa12.6□□□□□ -0.39
CLK3-224ENST00000568605 CLCN7P51798 805 aa12.6□□□□□ -0.39
CLK3-224ENST00000568605 UCNP55089 124 aa12.6□□□□□ -0.39
CLK3-224ENST00000568605 PPP1CAP62136 330 aa12.6□□□□□ -0.39
CLK3-224ENST00000568605 HSD11B2P80365 405 aa12.6□□□□□ -0.39
CLK3-224ENST00000568605 MC2RQ01718 297 aa12.6□□□□□ -0.39
CLK3-224ENST00000568605 ACY1Q03154 408 aa12.6□□□□□ -0.39
CLK3-224ENST00000568605 FOXM1Q08050 763 aa12.6□□□□□ -0.39
CLK3-224ENST00000568605 ABRQ12979 859 aa12.6□□□□□ -0.39
CLK3-224ENST00000568605 GBX1Q14549 363 aa12.6□□□□□ -0.39
CLK3-224ENST00000568605 FASTKD3Q14CZ7 662 aaKnown RBP12.6□□□□□ -0.39
CLK3-224ENST00000568605 FAM45BPQ6NSW5 357 aa12.6□□□□□ -0.39
CLK3-224ENST00000568605 SLC26A11Q86WA9 606 aa12.6□□□□□ -0.39
CLK3-224ENST00000568605 BMPERQ8N8U9 685 aa12.6□□□□□ -0.39
CLK3-224ENST00000568605 FAM45AQ8TCE6 357 aa12.6□□□□□ -0.39
CLK3-224ENST00000568605 KLHL6Q8WZ60 621 aa12.6□□□□□ -0.39
CLK3-224ENST00000568605 INPP5DQ92835 1189 aa12.6□□□□□ -0.39
CLK3-224ENST00000568605 SLC22A18Q96BI1 424 aa12.6□□□□□ -0.39
CLK3-224ENST00000568605 GPR21Q99679 349 aa12.6□□□□□ -0.39
CLK3-224ENST00000568605 MAP3K3Q99759 626 aa12.6□□□□□ -0.39
CLK3-224ENST00000568605 WDR83Q9BRX9 315 aaKnown RBP12.6□□□□□ -0.39
CLK3-224ENST00000568605 LRRC1Q9BTT6 524 aa12.6□□□□□ -0.39
CLK3-224ENST00000568605 TSPYL1Q9H0U9 437 aa12.6□□□□□ -0.39
CLK3-224ENST00000568605 OCIAD1Q9NX40 245 aa12.6□□□□□ -0.39
CLK3-224ENST00000568605 SIDT1Q9NXL6 827 aaKnown RBP12.6□□□□□ -0.39
CLK3-224ENST00000568605 SEMA5BQ9P283 1151 aa12.6□□□□□ -0.39
CLK3-224ENST00000568605 PTPRQQ9UMZ3 2332 aa12.6□□□□□ -0.39
CLK3-224ENST00000568605 SPTBP11277 2137 aa12.59□□□□□ -0.39
CLK3-224ENST00000568605 PABPN1LA6NDY0 278 aaKnown RBP12.59□□□□□ -0.39
CLK3-224ENST00000568605 ZNF839A8K0R7 811 aa12.59□□□□□ -0.39
CLK3-224ENST00000568605 C9orf172C9J069 976 aa12.59□□□□□ -0.39
CLK3-224ENST00000568605 TAF4O00268 1085 aa12.59□□□□□ -0.39
CLK3-224ENST00000568605 RASGRF2O14827 1237 aa12.59□□□□□ -0.39
CLK3-224ENST00000568605 MPC1LP0DKB6 136 aa12.59□□□□□ -0.39
CLK3-224ENST00000568605 MAP4P27816 1152 aaKnown RBP12.59□□□□□ -0.39
CLK3-224ENST00000568605 PKLRP30613 574 aa12.59□□□□□ -0.39
CLK3-224ENST00000568605 ATP1A2P50993 1020 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms