RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 TTC28Q96AY4 2481 aa18.13■□□□□ 0.49
CLN3-206ENST00000360019 K7EPI3 171 aa18.12■□□□□ 0.49
CLN3-206ENST00000360019 HDAC3O15379 428 aa18.12■□□□□ 0.49
CLN3-206ENST00000360019 KCNJ13O60928 360 aa18.12■□□□□ 0.49
CLN3-206ENST00000360019 STK16O75716 305 aa18.12■□□□□ 0.49
CLN3-206ENST00000360019 JUNP05412 331 aaKnown RBP18.12■□□□□ 0.49
CLN3-206ENST00000360019 THEGLP0DJG4 465 aa18.12■□□□□ 0.49
CLN3-206ENST00000360019 SRP54P61011 504 aaKnown RBP18.12■□□□□ 0.49
CLN3-206ENST00000360019 GTF2H2Q13888 395 aa18.12■□□□□ 0.49
CLN3-206ENST00000360019 TJAP1Q5JTD0 557 aa18.12■□□□□ 0.49
CLN3-206ENST00000360019 CLEC6AQ6EIG7 209 aa18.12■□□□□ 0.49
CLN3-206ENST00000360019 CAPRIN2Q6IMN6 1127 aaKnown RBP18.12■□□□□ 0.49
CLN3-206ENST00000360019 GTF2H2CQ6P1K8 395 aa18.12■□□□□ 0.49
CLN3-206ENST00000360019 METTL2BQ6P1Q9 378 aaKnown RBP18.12■□□□□ 0.49
CLN3-206ENST00000360019 C6orf89Q6UWU4 347 aa18.12■□□□□ 0.49
CLN3-206ENST00000360019 TEX9Q8N6V9 391 aa18.12■□□□□ 0.49
CLN3-206ENST00000360019 OR52B6Q8NGF0 335 aa18.12■□□□□ 0.49
CLN3-206ENST00000360019 TFGQ92734 400 aaPredicted RBP18.12■□□□□ 0.49
CLN3-206ENST00000360019 CCDC138Q96M89 665 aa18.12■□□□□ 0.49
CLN3-206ENST00000360019 NOL11Q9H8H0 719 aaKnown RBP18.12■□□□□ 0.49
CLN3-206ENST00000360019 OPTCQ9UBM4 332 aa18.12■□□□□ 0.49
CLN3-206ENST00000360019 FIS1Q9Y3D6 152 aa18.12■□□□□ 0.49
CLN3-206ENST00000360019 CFAP20Q9Y6A4 193 aaKnown RBP18.12■□□□□ 0.49
CLN3-206ENST00000360019 KNL1Q8NG31 2342 aa18.12■□□□□ 0.49
CLN3-206ENST00000360019 LRP4O75096 1905 aa18.12■□□□□ 0.49
CLN3-206ENST00000360019 EBAG9O00559 213 aa18.12■□□□□ 0.49
CLN3-206ENST00000360019 OR7A17O14581 309 aa18.12■□□□□ 0.49
CLN3-206ENST00000360019 MLYCDO95822 493 aa18.12■□□□□ 0.49
CLN3-206ENST00000360019 SLC16A8O95907 504 aa18.12■□□□□ 0.49
CLN3-206ENST00000360019 SLC35G4P0C7Q5 338 aa18.12■□□□□ 0.49
CLN3-206ENST00000360019 MAOBP27338 520 aa18.12■□□□□ 0.49
CLN3-206ENST00000360019 IMPA1P29218 277 aa18.12■□□□□ 0.49
CLN3-206ENST00000360019 HOXA6P31267 233 aa18.12■□□□□ 0.49
CLN3-206ENST00000360019 HK2P52789 917 aa18.12■□□□□ 0.49
CLN3-206ENST00000360019 FOXA1P55317 472 aa18.12■□□□□ 0.49
CLN3-206ENST00000360019 RBBP7Q16576 425 aa18.12■□□□□ 0.49
CLN3-206ENST00000360019 PTCHD3Q3KNS1 767 aa18.12■□□□□ 0.49
CLN3-206ENST00000360019 SYVN1Q86TM6 617 aa18.12■□□□□ 0.49
CLN3-206ENST00000360019 OR5AR1Q8NGP9 310 aa18.12■□□□□ 0.49
CLN3-206ENST00000360019 PYCR2Q96C36 320 aa18.12■□□□□ 0.49
CLN3-206ENST00000360019 HSPA12BQ96MM6 686 aa18.12■□□□□ 0.49
CLN3-206ENST00000360019 KCNA7Q96RP8 456 aa18.12■□□□□ 0.49
CLN3-206ENST00000360019 ATG10Q9H0Y0 220 aa18.12■□□□□ 0.49
CLN3-206ENST00000360019 PRMT8Q9NR22 394 aaPredicted RBP18.12■□□□□ 0.49
CLN3-206ENST00000360019 AASDHPPTQ9NRN7 309 aa18.12■□□□□ 0.49
CLN3-206ENST00000360019 STOX2Q9P2F5 926 aaPredicted RBP18.12■□□□□ 0.49
CLN3-206ENST00000360019 TRAF6Q9Y4K3 522 aa18.12■□□□□ 0.49
CLN3-206ENST00000360019 VPS13AQ96RL7 3174 aa18.12■□□□□ 0.49
CLN3-206ENST00000360019 SPTY2D1-AS1A0A0U1RR47 76 aa18.11■□□□□ 0.49
CLN3-206ENST00000360019 SLCO1B7G3V0H7 640 aa18.11■□□□□ 0.49
CLN3-206ENST00000360019 MYO1CO00159 1063 aa18.11■□□□□ 0.49
CLN3-206ENST00000360019 IFRD1O00458 451 aaPredicted RBP18.11■□□□□ 0.49
CLN3-206ENST00000360019 FGF4P08620 206 aa18.11■□□□□ 0.49
CLN3-206ENST00000360019 IDH3AP50213 366 aa18.11■□□□□ 0.49
CLN3-206ENST00000360019 CTBSQ01459 385 aa18.11■□□□□ 0.49
CLN3-206ENST00000360019 PTK2BQ14289 1009 aa18.11■□□□□ 0.49
CLN3-206ENST00000360019 TCEA2Q15560 299 aa18.11■□□□□ 0.49
CLN3-206ENST00000360019 PDCD2Q16342 344 aaPredicted RBP18.11■□□□□ 0.49
CLN3-206ENST00000360019 SLC9B1Q4ZJI4 515 aa18.11■□□□□ 0.49
CLN3-206ENST00000360019 EPGNQ6UW88 154 aa18.11■□□□□ 0.49
CLN3-206ENST00000360019 SLC36A4Q6YBV0 504 aa18.11■□□□□ 0.49
CLN3-206ENST00000360019 ZNF771Q7L3S4 317 aaPredicted RBP18.11■□□□□ 0.49
CLN3-206ENST00000360019 DCBLD1Q8N8Z6 715 aa18.11■□□□□ 0.49
CLN3-206ENST00000360019 PHC3Q8NDX5 983 aa18.11■□□□□ 0.49
CLN3-206ENST00000360019 CCL4L1Q8NHW4 92 aa18.11■□□□□ 0.49
CLN3-206ENST00000360019 CDK15Q96Q40 435 aa18.11■□□□□ 0.49
CLN3-206ENST00000360019 ZNF382Q96SR6 550 aa18.11■□□□□ 0.49
CLN3-206ENST00000360019 PLCD4Q9BRC7 762 aa18.11■□□□□ 0.49
CLN3-206ENST00000360019 NUF2Q9BZD4 464 aa18.11■□□□□ 0.49
CLN3-206ENST00000360019 TMEM168Q9H0V1 697 aa18.11■□□□□ 0.49
CLN3-206ENST00000360019 IPPKQ9H8X2 491 aa18.11■□□□□ 0.49
CLN3-206ENST00000360019 ABCF3Q9NUQ8 709 aa18.11■□□□□ 0.49
CLN3-206ENST00000360019 DNAJC28Q9NX36 388 aa18.11■□□□□ 0.49
CLN3-206ENST00000360019 VTI1BQ9UEU0 232 aa18.11■□□□□ 0.49
CLN3-206ENST00000360019 DGKBQ9Y6T7 804 aa18.11■□□□□ 0.49
CLN3-206ENST00000360019 WDFY4Q6ZS81 3184 aa18.11■□□□□ 0.49
CLN3-206ENST00000360019 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa18.1■□□□□ 0.49
CLN3-206ENST00000360019 HGSO14964 777 aaPredicted RBP18.1■□□□□ 0.49
CLN3-206ENST00000360019 ESRRBO95718 433 aa18.1■□□□□ 0.49
CLN3-206ENST00000360019 TDGF1P13385 188 aa18.1■□□□□ 0.49
CLN3-206ENST00000360019 IDSP22304 550 aa18.1■□□□□ 0.49
CLN3-206ENST00000360019 AK4P27144 223 aaPredicted RBP18.1■□□□□ 0.49
CLN3-206ENST00000360019 TUBB3Q13509 450 aa18.1■□□□□ 0.49
CLN3-206ENST00000360019 FZD2Q14332 565 aa18.1■□□□□ 0.49
CLN3-206ENST00000360019 GRB7Q14451 532 aa18.1■□□□□ 0.49
CLN3-206ENST00000360019 CLCA4Q14CN2 919 aa18.1■□□□□ 0.49
CLN3-206ENST00000360019 UGT3A2Q3SY77 523 aa18.1■□□□□ 0.49
CLN3-206ENST00000360019 DUS1LQ6P1R4 473 aaKnown RBP18.1■□□□□ 0.49
CLN3-206ENST00000360019 AGTRAPQ6RW13 159 aa18.1■□□□□ 0.49
CLN3-206ENST00000360019 LAYNQ6UX15 382 aa18.1■□□□□ 0.49
CLN3-206ENST00000360019 LRRC70Q7Z2Q7 622 aa18.1■□□□□ 0.49
CLN3-206ENST00000360019 HID1Q8IV36 788 aa18.1■□□□□ 0.49
CLN3-206ENST00000360019 TMEFF1Q8IYR6 380 aa18.1■□□□□ 0.49
CLN3-206ENST00000360019 INSM2Q96T92 566 aaPredicted RBP18.1■□□□□ 0.49
CLN3-206ENST00000360019 SLC32A1Q9H598 525 aa18.1■□□□□ 0.49
CLN3-206ENST00000360019 STN1Q9H668 368 aaKnown RBP18.1■□□□□ 0.49
CLN3-206ENST00000360019 PRDM8Q9NQV8 689 aa18.1■□□□□ 0.49
CLN3-206ENST00000360019 MYO15AQ9UKN7 3530 aa18.1■□□□□ 0.49
CLN3-206ENST00000360019 CCDC163A0A0D9SF12 145 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 MEI4A8MW99 385 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 288.4 ms