RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 NECAB3Q96P71 396 aaPredicted RBP22.11■■□□□ 1.13
CDX1-201ENST00000231656 TMEM79Q9BSE2 394 aa22.11■■□□□ 1.13
CDX1-201ENST00000231656 BTBD1Q9H0C5 482 aa22.11■■□□□ 1.13
CDX1-201ENST00000231656 CHRDQ9H2X0 955 aa22.11■■□□□ 1.13
CDX1-201ENST00000231656 WDR41Q9HAD4 459 aa22.11■■□□□ 1.13
CDX1-201ENST00000231656 C15orf41Q9Y2V0 281 aa22.11■■□□□ 1.13
CDX1-201ENST00000231656 FBP2O00757 339 aa22.1■■□□□ 1.13
CDX1-201ENST00000231656 GIPC1O14908 333 aa22.1■■□□□ 1.13
CDX1-201ENST00000231656 SGTAO43765 313 aa22.1■■□□□ 1.13
CDX1-201ENST00000231656 SNRPB2P08579 225 aaKnown RBP22.1■■□□□ 1.13
CDX1-201ENST00000231656 GCKP35557 465 aa22.1■■□□□ 1.13
CDX1-201ENST00000231656 HSPA7P48741 367 aa22.1■■□□□ 1.13
CDX1-201ENST00000231656 STX1BP61266 288 aa22.1■■□□□ 1.13
CDX1-201ENST00000231656 ZXDAP98168 799 aa22.1■■□□□ 1.13
CDX1-201ENST00000231656 SGCGQ13326 291 aa22.1■■□□□ 1.13
CDX1-201ENST00000231656 ART3Q13508 389 aa22.1■■□□□ 1.13
CDX1-201ENST00000231656 CCNIQ14094 377 aa22.1■■□□□ 1.13
CDX1-201ENST00000231656 MAP7D1Q3KQU3 841 aa22.1■■□□□ 1.13
CDX1-201ENST00000231656 SULT1C3Q6IMI6 304 aa22.1■■□□□ 1.13
CDX1-201ENST00000231656 OGFOD2Q6N063 350 aa22.1■■□□□ 1.13
CDX1-201ENST00000231656 BNC2Q6ZN30 1099 aaPredicted RBP22.1■■□□□ 1.13
CDX1-201ENST00000231656 FUNDC1Q8IVP5 155 aa22.1■■□□□ 1.13
CDX1-201ENST00000231656 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP22.1■■□□□ 1.13
CDX1-201ENST00000231656 SNX31Q8N9S9 440 aa22.1■■□□□ 1.13
CDX1-201ENST00000231656 OR9I1Q8NGQ6 314 aa22.1■■□□□ 1.13
CDX1-201ENST00000231656 DCUN1D1Q96GG9 259 aa22.1■■□□□ 1.13
CDX1-201ENST00000231656 SIT1Q9Y3P8 196 aa22.1■■□□□ 1.13
CDX1-201ENST00000231656 CHEK2O96017 543 aa22.1■■□□□ 1.13
CDX1-201ENST00000231656 DPP6P42658 865 aa22.1■■□□□ 1.13
CDX1-201ENST00000231656 RPS9P46781 194 aaKnown RBP22.1■■□□□ 1.13
CDX1-201ENST00000231656 SLC34A1Q06495 639 aa22.1■■□□□ 1.13
CDX1-201ENST00000231656 SWT1Q5T5J6 900 aaKnown RBP22.1■■□□□ 1.13
CDX1-201ENST00000231656 ZNF648Q5T619 568 aaPredicted RBP22.1■■□□□ 1.13
CDX1-201ENST00000231656 REP15Q6BDI9 236 aa22.1■■□□□ 1.13
CDX1-201ENST00000231656 PAOXQ6QHF9 649 aa22.1■■□□□ 1.13
CDX1-201ENST00000231656 CDYL2Q8N8U2 506 aa22.1■■□□□ 1.13
CDX1-201ENST00000231656 CCDC124Q96CT7 223 aaKnown RBP22.1■■□□□ 1.13
CDX1-201ENST00000231656 CDK15Q96Q40 435 aa22.1■■□□□ 1.13
CDX1-201ENST00000231656 EGFL8Q99944 293 aa22.1■■□□□ 1.13
CDX1-201ENST00000231656 MRPL1Q9BYD6 325 aaKnown RBP22.1■■□□□ 1.13
CDX1-201ENST00000231656 SLC17A9Q9BYT1 436 aa22.1■■□□□ 1.13
CDX1-201ENST00000231656 CD244Q9BZW8 370 aa22.1■■□□□ 1.13
CDX1-201ENST00000231656 STOML1Q9UBI4 398 aa22.1■■□□□ 1.13
CDX1-201ENST00000231656 CFAP99D6REC4 459 aa22.09■■□□□ 1.13
CDX1-201ENST00000231656 NUAK1O60285 661 aa22.09■■□□□ 1.13
CDX1-201ENST00000231656 IGLV3-19P01714 112 aa22.09■■□□□ 1.13
CDX1-201ENST00000231656 HGFP14210 728 aa22.09■■□□□ 1.13
CDX1-201ENST00000231656 MSH3P20585 1137 aa22.09■■□□□ 1.13
CDX1-201ENST00000231656 PTDSS1P48651 473 aaKnown RBP22.09■■□□□ 1.13
CDX1-201ENST00000231656 PPP2CBP62714 309 aa22.09■■□□□ 1.13
CDX1-201ENST00000231656 PPP2CAP67775 309 aa22.09■■□□□ 1.13
CDX1-201ENST00000231656 TRAF3Q13114 568 aa22.09■■□□□ 1.13
CDX1-201ENST00000231656 LRP8Q14114 963 aa22.09■■□□□ 1.13
CDX1-201ENST00000231656 PIGGQ5H8A4 983 aa22.09■■□□□ 1.13
CDX1-201ENST00000231656 TCHHL1Q5QJ38 904 aaPredicted RBP22.09■■□□□ 1.13
CDX1-201ENST00000231656 ICE2Q659A1 982 aa22.09■■□□□ 1.13
CDX1-201ENST00000231656 PNCKQ6P2M8 343 aa22.09■■□□□ 1.13
CDX1-201ENST00000231656 SPEM1Q8N4L4 309 aa22.09■■□□□ 1.13
CDX1-201ENST00000231656 CDRT15Q96T59 188 aa22.09■■□□□ 1.13
CDX1-201ENST00000231656 SERPINI1Q99574 410 aa22.09■■□□□ 1.13
CDX1-201ENST00000231656 SLC25A23Q9BV35 468 aa22.09■■□□□ 1.13
CDX1-201ENST00000231656 SGK2Q9HBY8 427 aa22.09■■□□□ 1.13
CDX1-201ENST00000231656 MBNL1Q9NR56 388 aaKnown RBP22.09■■□□□ 1.13
CDX1-201ENST00000231656 A0A0C4DFX4 3053 aa22.08■■□□□ 1.13
CDX1-201ENST00000231656 AP2A2O94973 939 aa22.08■■□□□ 1.13
CDX1-201ENST00000231656 PCCBP05166 539 aa22.08■■□□□ 1.13
CDX1-201ENST00000231656 MAT2AP31153 395 aaKnown RBP22.08■■□□□ 1.13
CDX1-201ENST00000231656 IRX1P78414 480 aaPredicted RBP22.08■■□□□ 1.13
CDX1-201ENST00000231656 CDKL4Q5MAI5 379 aa22.08■■□□□ 1.13
CDX1-201ENST00000231656 PLEKHS1Q5SXH7 462 aa22.08■■□□□ 1.13
CDX1-201ENST00000231656 METTL2BQ6P1Q9 378 aaKnown RBP22.08■■□□□ 1.13
CDX1-201ENST00000231656 SPATA19Q7Z5L4 167 aa22.08■■□□□ 1.13
CDX1-201ENST00000231656 DCBLD1Q8N8Z6 715 aa22.08■■□□□ 1.13
CDX1-201ENST00000231656 TP53I13Q8NBR0 393 aaPredicted RBP22.08■■□□□ 1.13
CDX1-201ENST00000231656 OR2T34Q8NGX1 318 aa22.08■■□□□ 1.13
CDX1-201ENST00000231656 OR2T11Q8NH01 316 aa22.08■■□□□ 1.13
CDX1-201ENST00000231656 CCT7Q99832 543 aa22.08■■□□□ 1.13
CDX1-201ENST00000231656 TACO1Q9BSH4 297 aaKnown RBP22.08■■□□□ 1.13
CDX1-201ENST00000231656 PFDN4Q9NQP4 134 aa22.08■■□□□ 1.13
CDX1-201ENST00000231656 SDR39U1Q9NRG7 319 aaPredicted RBP22.08■■□□□ 1.13
CDX1-201ENST00000231656 WWOXQ9NZC7 414 aa22.08■■□□□ 1.13
CDX1-201ENST00000231656 FKBP6O75344 327 aa22.07■■□□□ 1.12
CDX1-201ENST00000231656 OTCP00480 354 aa22.07■■□□□ 1.12
CDX1-201ENST00000231656 DCNP07585 359 aaKnown RBP22.07■■□□□ 1.12
CDX1-201ENST00000231656 MPC1LP0DKB6 136 aa22.07■■□□□ 1.12
CDX1-201ENST00000231656 MRPL19P49406 292 aaKnown RBP22.07■■□□□ 1.12
CDX1-201ENST00000231656 TMEM115Q12893 351 aaPredicted RBP22.07■■□□□ 1.12
CDX1-201ENST00000231656 MTAPQ13126 283 aa22.07■■□□□ 1.12
CDX1-201ENST00000231656 CCDC6Q16204 474 aa22.07■■□□□ 1.12
CDX1-201ENST00000231656 GSTA3Q16772 222 aa22.07■■□□□ 1.12
CDX1-201ENST00000231656 ZNF423Q2M1K9 1284 aa22.07■■□□□ 1.12
CDX1-201ENST00000231656 KIF19Q2TAC6 998 aa22.07■■□□□ 1.12
CDX1-201ENST00000231656 AAGABQ6PD74 315 aa22.07■■□□□ 1.12
CDX1-201ENST00000231656 SCIMPQ6UWF3 145 aa22.07■■□□□ 1.12
CDX1-201ENST00000231656 ADAMTSL4Q6UY14 1074 aa22.07■■□□□ 1.12
CDX1-201ENST00000231656 TRIM74Q86UV6 250 aa22.07■■□□□ 1.12
CDX1-201ENST00000231656 MIER2Q8N344 545 aa22.07■■□□□ 1.12
CDX1-201ENST00000231656 OR4F6Q8NGB9 312 aa22.07■■□□□ 1.12
CDX1-201ENST00000231656 IPPKQ9H8X2 491 aa22.07■■□□□ 1.12
CDX1-201ENST00000231656 CYP8B1Q9UNU6 501 aa22.07■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 98.5 ms