RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 TNFSF15O95150 251 aa16.87■□□□□ 0.29
SHKBP1-212ENST00000596163 ESR1P03372 595 aa16.87■□□□□ 0.29
SHKBP1-212ENST00000596163 THRAP10827 490 aa16.87■□□□□ 0.29
SHKBP1-212ENST00000596163 TYRP1P17643 537 aa16.87■□□□□ 0.29
SHKBP1-212ENST00000596163 PREPP48147 710 aa16.87■□□□□ 0.29
SHKBP1-212ENST00000596163 ADARP55265 1226 aaKnown RBP16.87■□□□□ 0.29
SHKBP1-212ENST00000596163 EIF3BP55884 814 aaKnown RBP16.87■□□□□ 0.29
SHKBP1-212ENST00000596163 CFHR1Q03591 330 aa16.87■□□□□ 0.29
SHKBP1-212ENST00000596163 DHX9Q08211 1270 aaKnown RBP16.87■□□□□ 0.29
SHKBP1-212ENST00000596163 C2orf54Q08AI8 447 aa16.87■□□□□ 0.29
SHKBP1-212ENST00000596163 BOP1Q14137 746 aaKnown RBP16.87■□□□□ 0.29
SHKBP1-212ENST00000596163 HIF1AQ16665 826 aa16.87■□□□□ 0.29
SHKBP1-212ENST00000596163 WHAMMP3Q1A5X7 153 aa16.87■□□□□ 0.29
SHKBP1-212ENST00000596163 TBC1D25Q3MII6 688 aa16.87■□□□□ 0.29
SHKBP1-212ENST00000596163 SPANXN3Q5MJ09 141 aa16.87■□□□□ 0.29
SHKBP1-212ENST00000596163 ZNF572Q7Z3I7 529 aaPredicted RBP16.87■□□□□ 0.29
SHKBP1-212ENST00000596163 PDZD3Q86UT5 571 aa16.87■□□□□ 0.29
SHKBP1-212ENST00000596163 SPDYE1Q8NFV5 336 aaPredicted RBP16.87■□□□□ 0.29
SHKBP1-212ENST00000596163 GSDMBQ8TAX9 411 aa16.87■□□□□ 0.29
SHKBP1-212ENST00000596163 TFGQ92734 400 aaPredicted RBP16.87■□□□□ 0.29
SHKBP1-212ENST00000596163 FGF11Q92914 225 aa16.87■□□□□ 0.29
SHKBP1-212ENST00000596163 FAM167BQ9BTA0 163 aa16.87■□□□□ 0.29
SHKBP1-212ENST00000596163 P2RY12Q9H244 342 aa16.87■□□□□ 0.29
SHKBP1-212ENST00000596163 KIR3DX1Q9H7L2 352 aa16.87■□□□□ 0.29
SHKBP1-212ENST00000596163 ZMIZ1Q9ULJ6 1067 aa16.87■□□□□ 0.29
SHKBP1-212ENST00000596163 SNX24Q9Y343 169 aa16.87■□□□□ 0.29
SHKBP1-212ENST00000596163 UTP11Q9Y3A2 253 aaKnown RBP16.87■□□□□ 0.29
SHKBP1-212ENST00000596163 ACACBO00763 2458 aa16.87■□□□□ 0.29
SHKBP1-212ENST00000596163 PRAMEF33A0A0G2JMD5 474 aa16.86■□□□□ 0.29
SHKBP1-212ENST00000596163 TOX3O15405 576 aaPredicted RBP16.86■□□□□ 0.29
SHKBP1-212ENST00000596163 ITGA2BP08514 1039 aa16.86■□□□□ 0.29
SHKBP1-212ENST00000596163 ITGB6P18564 788 aa16.86■□□□□ 0.29
SHKBP1-212ENST00000596163 PDHA2P29803 388 aa16.86■□□□□ 0.29
SHKBP1-212ENST00000596163 FMO4P31512 558 aa16.86■□□□□ 0.29
SHKBP1-212ENST00000596163 CSF2RBP32927 897 aa16.86■□□□□ 0.29
SHKBP1-212ENST00000596163 BRD3Q15059 726 aa16.86■□□□□ 0.29
SHKBP1-212ENST00000596163 SNAP47Q5SQN1 464 aa16.86■□□□□ 0.29
SHKBP1-212ENST00000596163 TMEM164Q5U3C3 297 aa16.86■□□□□ 0.29
SHKBP1-212ENST00000596163 ARMC6Q6NXE6 501 aa16.86■□□□□ 0.29
SHKBP1-212ENST00000596163 XKR5Q6UX68 686 aa16.86■□□□□ 0.29
SHKBP1-212ENST00000596163 CILP2Q8IUL8 1156 aa16.86■□□□□ 0.29
SHKBP1-212ENST00000596163 ACVR1CQ8NER5 493 aa16.86■□□□□ 0.29
SHKBP1-212ENST00000596163 RAB33BQ9H082 229 aa16.86■□□□□ 0.29
SHKBP1-212ENST00000596163 RAB17Q9H0T7 212 aa16.86■□□□□ 0.29
SHKBP1-212ENST00000596163 WHRNQ9P202 907 aa16.86■□□□□ 0.29
SHKBP1-212ENST00000596163 EPHA6Q9UF33 1036 aa16.86■□□□□ 0.29
SHKBP1-212ENST00000596163 SLC24A2Q9UI40 661 aa16.86■□□□□ 0.29
SHKBP1-212ENST00000596163 TPRP12270 2363 aaKnown RBP16.86■□□□□ 0.29
SHKBP1-212ENST00000596163 CAPN5O15484 640 aaPredicted RBP16.85■□□□□ 0.29
SHKBP1-212ENST00000596163 RAD51CO43502 376 aa16.85■□□□□ 0.29
SHKBP1-212ENST00000596163 C9P02748 559 aa16.85■□□□□ 0.29
SHKBP1-212ENST00000596163 MPSTP25325 297 aa16.85■□□□□ 0.29
SHKBP1-212ENST00000596163 CCR7P32248 378 aa16.85■□□□□ 0.29
SHKBP1-212ENST00000596163 RPL21P46778 160 aaKnown RBP16.85■□□□□ 0.29
SHKBP1-212ENST00000596163 CAPZBP47756 277 aa16.85■□□□□ 0.29
SHKBP1-212ENST00000596163 HSPA14Q0VDF9 509 aa16.85■□□□□ 0.29
SHKBP1-212ENST00000596163 C16orf72Q14CZ0 275 aa16.85■□□□□ 0.29
SHKBP1-212ENST00000596163 ZNF470Q6ECI4 717 aa16.85■□□□□ 0.29
SHKBP1-212ENST00000596163 ARHGAP22Q7Z5H3 698 aa16.85■□□□□ 0.29
SHKBP1-212ENST00000596163 KCNMB4Q86W47 210 aa16.85■□□□□ 0.29
SHKBP1-212ENST00000596163 OOSP2Q86WS3 158 aa16.85■□□□□ 0.29
SHKBP1-212ENST00000596163 AGGF1Q8N302 714 aaeCLIP16.85■□□□□ 0.29
SHKBP1-212ENST00000596163 RCBTB1Q8NDN9 531 aa16.85■□□□□ 0.29
SHKBP1-212ENST00000596163 MNS1Q8NEH6 495 aa16.85■□□□□ 0.29
SHKBP1-212ENST00000596163 LPGAT1Q92604 370 aa16.85■□□□□ 0.29
SHKBP1-212ENST00000596163 PRR11Q96HE9 360 aaPredicted RBP16.85■□□□□ 0.29
SHKBP1-212ENST00000596163 TRIM56Q9BRZ2 755 aaKnown RBP16.85■□□□□ 0.29
SHKBP1-212ENST00000596163 B3GNT4Q9C0J1 378 aa16.85■□□□□ 0.29
SHKBP1-212ENST00000596163 CCDC68Q9H2F9 335 aa16.85■□□□□ 0.29
SHKBP1-212ENST00000596163 TRIT1Q9H3H1 467 aaKnown RBP16.85■□□□□ 0.29
SHKBP1-212ENST00000596163 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.85■□□□□ 0.29
SHKBP1-212ENST00000596163 OGFRQ9NZT2 677 aa16.85■□□□□ 0.29
SHKBP1-212ENST00000596163 TMEM9Q9P0T7 183 aa16.85■□□□□ 0.29
SHKBP1-212ENST00000596163 PISDQ9UG56 409 aa16.85■□□□□ 0.29
SHKBP1-212ENST00000596163 POLG2Q9UHN1 485 aa16.85■□□□□ 0.29
SHKBP1-212ENST00000596163 ASF1AQ9Y294 204 aa16.85■□□□□ 0.29
SHKBP1-212ENST00000596163 MYLKQ15746 1914 aa16.85■□□□□ 0.29
SHKBP1-212ENST00000596163 ZFC3H1O60293 1989 aaKnown RBP16.85■□□□□ 0.29
SHKBP1-212ENST00000596163 CHD8Q9HCK8 2581 aa16.84■□□□□ 0.29
SHKBP1-212ENST00000596163 A0A1W2PNU3 283 aaPredicted RBP16.84■□□□□ 0.29
SHKBP1-212ENST00000596163 A8MU76 341 aa16.84■□□□□ 0.29
SHKBP1-212ENST00000596163 RRP8O43159 456 aaKnown RBP16.84■□□□□ 0.29
SHKBP1-212ENST00000596163 GPC4O75487 556 aa16.84■□□□□ 0.29
SHKBP1-212ENST00000596163 RPN2P04844 631 aa16.84■□□□□ 0.29
SHKBP1-212ENST00000596163 ANKRD34CP0C6C1 535 aa16.84■□□□□ 0.29
SHKBP1-212ENST00000596163 PKMP14618 531 aaKnown RBP16.84■□□□□ 0.29
SHKBP1-212ENST00000596163 CHRM3P20309 590 aa16.84■□□□□ 0.29
SHKBP1-212ENST00000596163 AOAHP28039 575 aa16.84■□□□□ 0.29
SHKBP1-212ENST00000596163 ELK3P41970 407 aa16.84■□□□□ 0.29
SHKBP1-212ENST00000596163 CAV1Q03135 178 aa16.84■□□□□ 0.29
SHKBP1-212ENST00000596163 PRKAA1Q13131 559 aa16.84■□□□□ 0.29
SHKBP1-212ENST00000596163 CRYMQ14894 314 aa16.84■□□□□ 0.29
SHKBP1-212ENST00000596163 MSS51Q4VC12 460 aa16.84■□□□□ 0.29
SHKBP1-212ENST00000596163 PLEKHS1Q5SXH7 462 aa16.84■□□□□ 0.29
SHKBP1-212ENST00000596163 IRGCQ6NXR0 463 aa16.84■□□□□ 0.29
SHKBP1-212ENST00000596163 DUS1LQ6P1R4 473 aaKnown RBP16.84■□□□□ 0.29
SHKBP1-212ENST00000596163 CENPUQ71F23 418 aa16.84■□□□□ 0.29
SHKBP1-212ENST00000596163 OTOAQ7RTW8 1153 aa16.84■□□□□ 0.29
SHKBP1-212ENST00000596163 TBC1D21Q8IYX1 336 aa16.84■□□□□ 0.29
SHKBP1-212ENST00000596163 SLC22A15Q8IZD6 547 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms