RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 RSPO4Q2I0M5 234 aaPredicted RBP4.53□□□□□ -1.68
SF3B1-202ENST00000409915 TYSND1Q2T9J0 566 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 GALNTL6Q49A17 601 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 HSP90AA5PQ58FG0 334 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 RAB41Q5JT25 222 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 FAM78AQ5JUQ0 283 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 C10orf76Q5T2E6 689 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 DENND2CQ68D51 928 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 TXNDC8Q6A555 127 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 DPY19L2P1Q6NXN4 242 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 TMEM154Q6P9G4 183 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 FAM111BQ6SJ93 734 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 SUSD1Q6UWL2 747 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 VSTM1Q6UX27 236 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 LRIG3Q6UXM1 1119 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 MEX3BQ6ZN04 569 aaKnown RBP4.53□□□□□ -1.68
SF3B1-202ENST00000409915 APTXQ7Z2E3 356 aaKnown RBP4.53□□□□□ -1.68
SF3B1-202ENST00000409915 RABEPKQ7Z6M1 372 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 PHLDB2Q86SQ0 1253 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 ADGRG6Q86SQ4 1221 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 UNC93AQ86WB7 457 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 FAM129CQ86XR2 697 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 RASGRP3Q8IV61 690 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 CROCCP3Q8IVE0 287 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 FAM20CQ8IXL6 584 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP4.53□□□□□ -1.68
SF3B1-202ENST00000409915 CCDC105Q8IYK2 499 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 ZDHHC14Q8IZN3 488 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 SPARTQ8N0X7 666 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 CRYBG2Q8N1P7 616 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 BBS5Q8N3I7 341 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 HDDC3Q8N4P3 179 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 MMGT1Q8N4V1 131 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 LINC00469Q8N7U9 141 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 ANKS4BQ8N8V4 417 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 EIF1ADQ8N9N8 165 aaKnown RBP4.53□□□□□ -1.68
SF3B1-202ENST00000409915 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP4.53□□□□□ -1.68
SF3B1-202ENST00000409915 CDKL2Q92772 493 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 MR1Q95460 341 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 FBXO32Q969P5 355 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 SPSB4Q96A44 273 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 SMARCD1Q96GM5 515 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 PDLIM5Q96HC4 596 aaKnown RBP4.53□□□□□ -1.68
SF3B1-202ENST00000409915 TMEM176AQ96HP8 235 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 MED30Q96HR3 178 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 VPS50Q96JG6 964 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 CCDC42Q96M95 316 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 OLFM3Q96PB7 478 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 SLC22A12Q96S37 553 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 PLA2G2FQ9BZM2 168 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 REXO4Q9GZR2 422 aaKnown RBP4.53□□□□□ -1.68
SF3B1-202ENST00000409915 KCNK12Q9HB15 430 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 LTB4R2Q9NPC1 389 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 UBE2TQ9NPD8 197 aaPredicted RBP4.53□□□□□ -1.68
SF3B1-202ENST00000409915 FAM207AQ9NSI2 230 aaPredicted RBP4.53□□□□□ -1.68
SF3B1-202ENST00000409915 PTTG2Q9NZH5 202 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 ADAM22Q9P0K1 906 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 GULP1Q9UBP9 304 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 EXTL2Q9UBQ6 330 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 DNAJC12Q9UKB3 198 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 TSPAN16Q9UKR8 245 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 SARDHQ9UL12 918 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 SATB2Q9UPW6 733 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 AURKCQ9UQB9 309 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 CCL26Q9Y258 94 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 ACTL7BQ9Y614 415 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 KCNE2Q9Y6J6 123 aa4.53□□□□□ -1.68
SF3B1-202ENST00000409915 RNF103-CHMP3A0A140T963 221 aa4.52□□□□□ -1.69
SF3B1-202ENST00000409915 SSU72P8A0A1W2PR75 194 aa4.52□□□□□ -1.69
SF3B1-202ENST00000409915 FAM90A20PA6NIJ5 464 aa4.52□□□□□ -1.69
SF3B1-202ENST00000409915 GLOD5A6NK44 160 aa4.52□□□□□ -1.69
SF3B1-202ENST00000409915 C9orf172C9J069 976 aa4.52□□□□□ -1.69
SF3B1-202ENST00000409915 HHLA1C9JL84 531 aa4.52□□□□□ -1.69
SF3B1-202ENST00000409915 SPECC1L-ADORA2AF8WAN1 911 aa4.52□□□□□ -1.69
SF3B1-202ENST00000409915 GOLGA8TH3BQL2 631 aa4.52□□□□□ -1.69
SF3B1-202ENST00000409915 M0QYV0 167 aa4.52□□□□□ -1.69
SF3B1-202ENST00000409915 RNF103O00237 685 aa4.52□□□□□ -1.69
SF3B1-202ENST00000409915 O00370 1275 aa4.52□□□□□ -1.69
SF3B1-202ENST00000409915 ZNF197O14709 1029 aa4.52□□□□□ -1.69
SF3B1-202ENST00000409915 HAT1O14929 419 aa4.52□□□□□ -1.69
SF3B1-202ENST00000409915 ZNF263O14978 683 aa4.52□□□□□ -1.69
SF3B1-202ENST00000409915 MDM4O15151 490 aa4.52□□□□□ -1.69
SF3B1-202ENST00000409915 TEX33O43247 280 aa4.52□□□□□ -1.69
SF3B1-202ENST00000409915 TNFSF14O43557 240 aa4.52□□□□□ -1.69
SF3B1-202ENST00000409915 NRP2O60462 931 aa4.52□□□□□ -1.69
SF3B1-202ENST00000409915 BCAS2O75934 225 aaPredicted RBP4.52□□□□□ -1.69
SF3B1-202ENST00000409915 FUCA1P04066 466 aa4.52□□□□□ -1.69
SF3B1-202ENST00000409915 GLI1P08151 1106 aa4.52□□□□□ -1.69
SF3B1-202ENST00000409915 DRD2P14416 443 aa4.52□□□□□ -1.69
SF3B1-202ENST00000409915 NR1D1P20393 614 aa4.52□□□□□ -1.69
SF3B1-202ENST00000409915 M6PRP20645 277 aa4.52□□□□□ -1.69
SF3B1-202ENST00000409915 DRD4P21917 467 aa4.52□□□□□ -1.69
SF3B1-202ENST00000409915 MST1P26927 711 aa4.52□□□□□ -1.69
SF3B1-202ENST00000409915 ACVR2AP27037 513 aa4.52□□□□□ -1.69
SF3B1-202ENST00000409915 CDC25CP30307 473 aa4.52□□□□□ -1.69
SF3B1-202ENST00000409915 RGS7P49802 495 aa4.52□□□□□ -1.69
SF3B1-202ENST00000409915 MFAP3P55082 362 aa4.52□□□□□ -1.69
SF3B1-202ENST00000409915 ADARP55265 1226 aaKnown RBP4.52□□□□□ -1.69
SF3B1-202ENST00000409915 NRG3P56975 720 aa4.52□□□□□ -1.69
SF3B1-202ENST00000409915 YWHAEP62258 255 aaKnown RBP4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms