RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 LOC101059948A0A1B0GTJ6 334 aa18.63■□□□□ 0.57
CCDC28A-203ENST00000617445 GOLGA6L3A6NEY3 463 aa18.63■□□□□ 0.57
CCDC28A-203ENST00000617445 ERI2A8K979 691 aaKnown RBP18.63■□□□□ 0.57
CCDC28A-203ENST00000617445 KIF1CO43896 1103 aaKnown RBP18.63■□□□□ 0.57
CCDC28A-203ENST00000617445 MT-ND3P03897 115 aa18.63■□□□□ 0.57
CCDC28A-203ENST00000617445 STAT5AP42229 794 aa18.63■□□□□ 0.57
CCDC28A-203ENST00000617445 ZNF449Q6P9G9 518 aa18.63■□□□□ 0.57
CCDC28A-203ENST00000617445 C6orf15Q6UXA7 325 aaPredicted RBP18.63■□□□□ 0.57
CCDC28A-203ENST00000617445 FAM92BQ6ZTR7 304 aa18.63■□□□□ 0.57
CCDC28A-203ENST00000617445 PPP1R3BQ86XI6 285 aa18.63■□□□□ 0.57
CCDC28A-203ENST00000617445 RASGRP3Q8IV61 690 aa18.63■□□□□ 0.57
CCDC28A-203ENST00000617445 CFAP206Q8IYR0 622 aa18.63■□□□□ 0.57
CCDC28A-203ENST00000617445 STYXQ8WUJ0 223 aa18.63■□□□□ 0.57
CCDC28A-203ENST00000617445 SLC41A2Q96JW4 573 aa18.63■□□□□ 0.57
CCDC28A-203ENST00000617445 C12orf66Q96MD2 445 aa18.63■□□□□ 0.57
CCDC28A-203ENST00000617445 ALS2CR12Q96Q35 445 aa18.63■□□□□ 0.57
CCDC28A-203ENST00000617445 DESI2Q9BSY9 194 aa18.63■□□□□ 0.57
CCDC28A-203ENST00000617445 TMEM121Q9BTD3 319 aa18.63■□□□□ 0.57
CCDC28A-203ENST00000617445 FAM117AQ9C073 453 aa18.63■□□□□ 0.57
CCDC28A-203ENST00000617445 KIR3DX1Q9H7L2 352 aa18.63■□□□□ 0.57
CCDC28A-203ENST00000617445 NLE1Q9NVX2 485 aaPredicted RBP18.63■□□□□ 0.57
CCDC28A-203ENST00000617445 ZDHHC3Q9NYG2 299 aa18.63■□□□□ 0.57
CCDC28A-203ENST00000617445 TUBD1Q9UJT1 453 aa18.63■□□□□ 0.57
CCDC28A-203ENST00000617445 IGLV3-16A0A075B6K0 115 aa18.62■□□□□ 0.57
CCDC28A-203ENST00000617445 TRBV5-4A0A0C4DH59 114 aa18.62■□□□□ 0.57
CCDC28A-203ENST00000617445 OR5K3A6NET4 321 aa18.62■□□□□ 0.57
CCDC28A-203ENST00000617445 TLCD2A6NGC4 264 aa18.62■□□□□ 0.57
CCDC28A-203ENST00000617445 SGTAO43765 313 aa18.62■□□□□ 0.57
CCDC28A-203ENST00000617445 METTL18O95568 372 aa18.62■□□□□ 0.57
CCDC28A-203ENST00000617445 AP2A1O95782 977 aa18.62■□□□□ 0.57
CCDC28A-203ENST00000617445 FAM87AP0C7U9 286 aa18.62■□□□□ 0.57
CCDC28A-203ENST00000617445 MC4RP32245 332 aa18.62■□□□□ 0.57
CCDC28A-203ENST00000617445 CCR10P46092 362 aa18.62■□□□□ 0.57
CCDC28A-203ENST00000617445 SH3BP2P78314 561 aa18.62■□□□□ 0.57
CCDC28A-203ENST00000617445 TMPRSS15P98073 1019 aa18.62■□□□□ 0.57
CCDC28A-203ENST00000617445 ACY1Q03154 408 aa18.62■□□□□ 0.57
CCDC28A-203ENST00000617445 LAMB3Q13751 1172 aa18.62■□□□□ 0.57
CCDC28A-203ENST00000617445 CAPRIN2Q6IMN6 1127 aaKnown RBP18.62■□□□□ 0.57
CCDC28A-203ENST00000617445 ARMC6Q6NXE6 501 aa18.62■□□□□ 0.57
CCDC28A-203ENST00000617445 OOSP2Q86WS3 158 aa18.62■□□□□ 0.57
CCDC28A-203ENST00000617445 SIDT2Q8NBJ9 832 aaKnown RBP18.62■□□□□ 0.57
CCDC28A-203ENST00000617445 HRASLS2Q9NWW9 162 aa18.62■□□□□ 0.57
CCDC28A-203ENST00000617445 SLC24A2Q9UI40 661 aa18.62■□□□□ 0.57
CCDC28A-203ENST00000617445 HEMK1Q9Y5R4 338 aaPredicted RBP18.62■□□□□ 0.57
CCDC28A-203ENST00000617445 RPS6KL1Q9Y6S9 549 aa18.62■□□□□ 0.57
CCDC28A-203ENST00000617445 KRT86O43790 486 aa18.61■□□□□ 0.57
CCDC28A-203ENST00000617445 SPAG6O75602 509 aa18.61■□□□□ 0.57
CCDC28A-203ENST00000617445 CCNYL3P0C7X3 344 aa18.61■□□□□ 0.57
CCDC28A-203ENST00000617445 ITGB6P18564 788 aa18.61■□□□□ 0.57
CCDC28A-203ENST00000617445 PSMA3P25788 255 aa18.61■□□□□ 0.57
CCDC28A-203ENST00000617445 ACRV1P26436 265 aa18.61■□□□□ 0.57
CCDC28A-203ENST00000617445 ARL4DP49703 201 aa18.61■□□□□ 0.57
CCDC28A-203ENST00000617445 CACNG1Q06432 222 aa18.61■□□□□ 0.57
CCDC28A-203ENST00000617445 NFATC3Q12968 1075 aa18.61■□□□□ 0.57
CCDC28A-203ENST00000617445 RPA4Q13156 261 aa18.61■□□□□ 0.57
CCDC28A-203ENST00000617445 KRT33BQ14525 404 aa18.61■□□□□ 0.57
CCDC28A-203ENST00000617445 GSE1Q14687 1217 aa18.61■□□□□ 0.57
CCDC28A-203ENST00000617445 SKIDA1Q1XH10 827 aa18.61■□□□□ 0.57
CCDC28A-203ENST00000617445 DNTTIP2Q5QJE6 756 aaKnown RBP18.61■□□□□ 0.57
CCDC28A-203ENST00000617445 SEL1L2Q5TEA6 688 aa18.61■□□□□ 0.57
CCDC28A-203ENST00000617445 SPC24Q8NBT2 197 aa18.61■□□□□ 0.57
CCDC28A-203ENST00000617445 STAMBPL1Q96FJ0 436 aa18.61■□□□□ 0.57
CCDC28A-203ENST00000617445 CDKN2AIPNLQ96HQ2 116 aa18.61■□□□□ 0.57
CCDC28A-203ENST00000617445 DNAJC1Q96KC8 554 aaKnown RBP18.61■□□□□ 0.57
CCDC28A-203ENST00000617445 RARRES3Q9UL19 164 aa18.61■□□□□ 0.57
CCDC28A-203ENST00000617445 R3HDM2Q9Y2K5 976 aaKnown RBP18.61■□□□□ 0.57
CCDC28A-203ENST00000617445 CFAP20Q9Y6A4 193 aaKnown RBP18.61■□□□□ 0.57
CCDC28A-203ENST00000617445 BOD1L1Q8NFC6 3051 aa18.6■□□□□ 0.57
CCDC28A-203ENST00000617445 IGHV5-51A0A0C4DH38 117 aa18.6■□□□□ 0.57
CCDC28A-203ENST00000617445 UBA6A0AVT1 1052 aaPredicted RBP18.6■□□□□ 0.57
CCDC28A-203ENST00000617445 MATN2O00339 956 aa18.6■□□□□ 0.57
CCDC28A-203ENST00000617445 AP2A2O94973 939 aa18.6■□□□□ 0.57
CCDC28A-203ENST00000617445 GAS8O95995 478 aa18.6■□□□□ 0.57
CCDC28A-203ENST00000617445 POLBP06746 335 aa18.6■□□□□ 0.57
CCDC28A-203ENST00000617445 CD151P48509 253 aa18.6■□□□□ 0.57
CCDC28A-203ENST00000617445 GDF10P55107 478 aa18.6■□□□□ 0.57
CCDC28A-203ENST00000617445 GSDMDP57764 484 aa18.6■□□□□ 0.57
CCDC28A-203ENST00000617445 HSD11B2P80365 405 aa18.6■□□□□ 0.57
CCDC28A-203ENST00000617445 ZRANB3Q5FWF4 1079 aa18.6■□□□□ 0.57
CCDC28A-203ENST00000617445 ACVR1CQ8NER5 493 aa18.6■□□□□ 0.57
CCDC28A-203ENST00000617445 OR8K5Q8NH50 307 aa18.6■□□□□ 0.57
CCDC28A-203ENST00000617445 RMDN2Q96LZ7 410 aa18.6■□□□□ 0.57
CCDC28A-203ENST00000617445 MAP3K3Q99759 626 aa18.6■□□□□ 0.57
CCDC28A-203ENST00000617445 SLC25A18Q9H1K4 315 aa18.6■□□□□ 0.57
CCDC28A-203ENST00000617445 FAM96AQ9H5X1 160 aa18.6■□□□□ 0.57
CCDC28A-203ENST00000617445 KCND3Q9UK17 655 aa18.6■□□□□ 0.57
CCDC28A-203ENST00000617445 PADI1Q9ULC6 663 aa18.6■□□□□ 0.57
CCDC28A-203ENST00000617445 PCDHB3Q9Y5E6 796 aa18.6■□□□□ 0.57
CCDC28A-203ENST00000617445 CAPN6Q9Y6Q1 641 aa18.6■□□□□ 0.57
CCDC28A-203ENST00000617445 TCRBV7S2A1N4TA0A589 114 aa18.59■□□□□ 0.57
CCDC28A-203ENST00000617445 MROH6A6NGR9 719 aa18.59■□□□□ 0.57
CCDC28A-203ENST00000617445 QSOX1O00391 747 aa18.59■□□□□ 0.57
CCDC28A-203ENST00000617445 IFRD1O00458 451 aaPredicted RBP18.59■□□□□ 0.57
CCDC28A-203ENST00000617445 NKX2-8O15522 239 aa18.59■□□□□ 0.57
CCDC28A-203ENST00000617445 KIAA0754O94854 1291 aa18.59■□□□□ 0.57
CCDC28A-203ENST00000617445 ZBTB11O95625 1053 aaPredicted RBP18.59■□□□□ 0.57
CCDC28A-203ENST00000617445 RECKO95980 971 aa18.59■□□□□ 0.57
CCDC28A-203ENST00000617445 ZNF28P17035 718 aa18.59■□□□□ 0.57
CCDC28A-203ENST00000617445 TPH1P17752 444 aa18.59■□□□□ 0.57
CCDC28A-203ENST00000617445 TCN2P20062 427 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms