RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 FOXP3Q9BZS1 431 aa16.91■□□□□ 0.3
SHKBP1-212ENST00000596163 PRSS21Q9Y6M0 314 aa16.91■□□□□ 0.3
SHKBP1-212ENST00000596163 ARHGEF17Q96PE2 2063 aaPredicted RBP16.91■□□□□ 0.3
SHKBP1-212ENST00000596163 HGSO14964 777 aaPredicted RBP16.9■□□□□ 0.3
SHKBP1-212ENST00000596163 CASC3O15234 703 aaKnown RBP16.9■□□□□ 0.3
SHKBP1-212ENST00000596163 OR1I1O60431 355 aa16.9■□□□□ 0.3
SHKBP1-212ENST00000596163 TTC4O95801 387 aa16.9■□□□□ 0.3
SHKBP1-212ENST00000596163 MPOP05164 745 aa16.9■□□□□ 0.3
SHKBP1-212ENST00000596163 PGAM1P18669 254 aa16.9■□□□□ 0.3
SHKBP1-212ENST00000596163 OGNP20774 298 aaKnown RBP16.9■□□□□ 0.3
SHKBP1-212ENST00000596163 IVDP26440 423 aa16.9■□□□□ 0.3
SHKBP1-212ENST00000596163 PDX1P52945 283 aa16.9■□□□□ 0.3
SHKBP1-212ENST00000596163 SEMA3AQ14563 771 aa16.9■□□□□ 0.3
SHKBP1-212ENST00000596163 SYTL3Q4VX76 610 aa16.9■□□□□ 0.3
SHKBP1-212ENST00000596163 C3orf38Q5JPI3 329 aa16.9■□□□□ 0.3
SHKBP1-212ENST00000596163 PTRHD1Q6GMV3 140 aaKnown RBP16.9■□□□□ 0.3
SHKBP1-212ENST00000596163 CAPRIN2Q6IMN6 1127 aaKnown RBP16.9■□□□□ 0.3
SHKBP1-212ENST00000596163 NEPROQ6NW34 567 aa16.9■□□□□ 0.3
SHKBP1-212ENST00000596163 IGF2-ASQ6U949 168 aa16.9■□□□□ 0.3
SHKBP1-212ENST00000596163 MICALCLQ6ZW33 695 aa16.9■□□□□ 0.3
SHKBP1-212ENST00000596163 B3GNT8Q7Z7M8 397 aa16.9■□□□□ 0.3
SHKBP1-212ENST00000596163 MDM1Q8TC05 714 aa16.9■□□□□ 0.3
SHKBP1-212ENST00000596163 CALML6Q8TD86 181 aa16.9■□□□□ 0.3
SHKBP1-212ENST00000596163 ZNF578Q96N58 590 aaPredicted RBP16.9■□□□□ 0.3
SHKBP1-212ENST00000596163 PANX3Q96QZ0 392 aa16.9■□□□□ 0.3
SHKBP1-212ENST00000596163 TBC1D10AQ9BXI6 508 aa16.9■□□□□ 0.3
SHKBP1-212ENST00000596163 SEMA6CQ9H3T2 930 aa16.9■□□□□ 0.3
SHKBP1-212ENST00000596163 MARCH4Q9P2E8 410 aaPredicted RBP16.9■□□□□ 0.3
SHKBP1-212ENST00000596163 GNPTGQ9UJJ9 305 aa16.9■□□□□ 0.3
SHKBP1-212ENST00000596163 CDC23Q9UJX2 597 aa16.9■□□□□ 0.3
SHKBP1-212ENST00000596163 SATB2Q9UPW6 733 aa16.9■□□□□ 0.3
SHKBP1-212ENST00000596163 IGHV5-10-1A0A0J9YXX1 117 aa16.89■□□□□ 0.29
SHKBP1-212ENST00000596163 H3BMM5 538 aa16.89■□□□□ 0.29
SHKBP1-212ENST00000596163 PLD2O14939 933 aa16.89■□□□□ 0.29
SHKBP1-212ENST00000596163 KPNA5O15131 536 aa16.89■□□□□ 0.29
SHKBP1-212ENST00000596163 BRINP1O60477 761 aa16.89■□□□□ 0.29
SHKBP1-212ENST00000596163 DXOO77932 396 aaKnown RBP16.89■□□□□ 0.29
SHKBP1-212ENST00000596163 JMJD7P0C870 316 aa16.89■□□□□ 0.29
SHKBP1-212ENST00000596163 RPS3P23396 243 aaKnown RBP eCLIP16.89■□□□□ 0.29
SHKBP1-212ENST00000596163 ARCN1P48444 511 aaKnown RBP16.89■□□□□ 0.29
SHKBP1-212ENST00000596163 ARL4CP56559 192 aa16.89■□□□□ 0.29
SHKBP1-212ENST00000596163 TUBB2AQ13885 445 aa16.89■□□□□ 0.29
SHKBP1-212ENST00000596163 GPR18Q14330 331 aa16.89■□□□□ 0.29
SHKBP1-212ENST00000596163 PLCL1Q15111 1095 aa16.89■□□□□ 0.29
SHKBP1-212ENST00000596163 ST3GAL2Q16842 350 aa16.89■□□□□ 0.29
SHKBP1-212ENST00000596163 LONRF1Q17RB8 773 aa16.89■□□□□ 0.29
SHKBP1-212ENST00000596163 HIBCHQ6NVY1 386 aaPredicted RBP16.89■□□□□ 0.29
SHKBP1-212ENST00000596163 FOXR1Q6PIV2 292 aa16.89■□□□□ 0.29
SHKBP1-212ENST00000596163 ZNF574Q6ZN55 896 aaPredicted RBP16.89■□□□□ 0.29
SHKBP1-212ENST00000596163 LDB1Q86U70 411 aaPredicted RBP16.89■□□□□ 0.29
SHKBP1-212ENST00000596163 LRRC39Q96DD0 335 aa16.89■□□□□ 0.29
SHKBP1-212ENST00000596163 RMDN2Q96LZ7 410 aa16.89■□□□□ 0.29
SHKBP1-212ENST00000596163 TRIM51Q9BSJ1 452 aa16.89■□□□□ 0.29
SHKBP1-212ENST00000596163 TUBB2BQ9BVA1 445 aa16.89■□□□□ 0.29
SHKBP1-212ENST00000596163 TRIM31Q9BZY9 425 aa16.89■□□□□ 0.29
SHKBP1-212ENST00000596163 PDP2Q9P2J9 529 aa16.89■□□□□ 0.29
SHKBP1-212ENST00000596163 FAM169AQ9Y6X4 670 aa16.89■□□□□ 0.29
SHKBP1-212ENST00000596163 RP1P56715 2156 aa16.89■□□□□ 0.29
SHKBP1-212ENST00000596163 UBA6A0AVT1 1052 aaPredicted RBP16.88■□□□□ 0.29
SHKBP1-212ENST00000596163 URI1O94763 535 aaPredicted RBP16.88■□□□□ 0.29
SHKBP1-212ENST00000596163 SEC31AO94979 1220 aaKnown RBP16.88■□□□□ 0.29
SHKBP1-212ENST00000596163 CAPNS1P04632 268 aa16.88■□□□□ 0.29
SHKBP1-212ENST00000596163 APOA4P06727 396 aa16.88■□□□□ 0.29
SHKBP1-212ENST00000596163 HOXB3P14651 431 aaPredicted RBP16.88■□□□□ 0.29
SHKBP1-212ENST00000596163 ARNTP27540 789 aa16.88■□□□□ 0.29
SHKBP1-212ENST00000596163 CSTF2P33240 577 aaKnown RBP eCLIP16.88■□□□□ 0.29
SHKBP1-212ENST00000596163 ITGA8P53708 1063 aa16.88■□□□□ 0.29
SHKBP1-212ENST00000596163 ERVPABLB-1P60509 514 aa16.88■□□□□ 0.29
SHKBP1-212ENST00000596163 CALCOCO2Q13137 446 aa16.88■□□□□ 0.29
SHKBP1-212ENST00000596163 TMED2Q15363 201 aa16.88■□□□□ 0.29
SHKBP1-212ENST00000596163 TYSND1Q2T9J0 566 aa16.88■□□□□ 0.29
SHKBP1-212ENST00000596163 BBS9Q3SYG4 887 aa16.88■□□□□ 0.29
SHKBP1-212ENST00000596163 ZNF658BQ4V348 819 aaPredicted RBP16.88■□□□□ 0.29
SHKBP1-212ENST00000596163 TMPRSS9Q7Z410 1059 aa16.88■□□□□ 0.29
SHKBP1-212ENST00000596163 PROSER1Q86XN7 944 aa16.88■□□□□ 0.29
SHKBP1-212ENST00000596163 LILRA3Q8N6C8 439 aaPredicted RBP16.88■□□□□ 0.29
SHKBP1-212ENST00000596163 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.88■□□□□ 0.29
SHKBP1-212ENST00000596163 AGBL5Q8NDL9 886 aa16.88■□□□□ 0.29
SHKBP1-212ENST00000596163 ASZ1Q8WWH4 475 aa16.88■□□□□ 0.29
SHKBP1-212ENST00000596163 ZNF592Q92610 1267 aa16.88■□□□□ 0.29
SHKBP1-212ENST00000596163 ZDHHC12Q96GR4 267 aa16.88■□□□□ 0.29
SHKBP1-212ENST00000596163 CCDC74BQ96LY2 380 aa16.88■□□□□ 0.29
SHKBP1-212ENST00000596163 SLC46A1Q96NT5 459 aa16.88■□□□□ 0.29
SHKBP1-212ENST00000596163 FCRL3Q96P31 734 aaPredicted RBP16.88■□□□□ 0.29
SHKBP1-212ENST00000596163 FERD3LQ96RJ6 166 aa16.88■□□□□ 0.29
SHKBP1-212ENST00000596163 EBNA1BP2Q99848 306 aaKnown RBP16.88■□□□□ 0.29
SHKBP1-212ENST00000596163 ERP44Q9BS26 406 aa16.88■□□□□ 0.29
SHKBP1-212ENST00000596163 OR52A5Q9H2C5 316 aa16.88■□□□□ 0.29
SHKBP1-212ENST00000596163 MVB12BQ9H7P6 319 aa16.88■□□□□ 0.29
SHKBP1-212ENST00000596163 THSD1Q9NS62 852 aa16.88■□□□□ 0.29
SHKBP1-212ENST00000596163 C20orf96Q9NUD7 363 aaPredicted RBP16.88■□□□□ 0.29
SHKBP1-212ENST00000596163 INTS10Q9NVR2 710 aaKnown RBP16.88■□□□□ 0.29
SHKBP1-212ENST00000596163 LOXL2Q9Y4K0 774 aa16.88■□□□□ 0.29
SHKBP1-212ENST00000596163 CFAP20Q9Y6A4 193 aaKnown RBP16.88■□□□□ 0.29
SHKBP1-212ENST00000596163 PLXNB3Q9ULL4 1909 aa16.88■□□□□ 0.29
SHKBP1-212ENST00000596163 ZCWPW2A0A1B0GU75 182 aa16.87■□□□□ 0.29
SHKBP1-212ENST00000596163 SLC5A10A0PJK1 596 aa16.87■□□□□ 0.29
SHKBP1-212ENST00000596163 GOLGA8KD6RF30 607 aa16.87■□□□□ 0.29
SHKBP1-212ENST00000596163 GOLGA8TH3BQL2 631 aa16.87■□□□□ 0.29
SHKBP1-212ENST00000596163 KDM1AO60341 852 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms