RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 POM121BA6NF01 834 aa18.26■□□□□ 0.51
CLN3-206ENST00000360019 NCF1BA6NI72 391 aaPredicted RBP18.26■□□□□ 0.51
CLN3-206ENST00000360019 NCF1CA8MVU1 366 aaPredicted RBP18.26■□□□□ 0.51
CLN3-206ENST00000360019 KLK8O60259 260 aa18.26■□□□□ 0.51
CLN3-206ENST00000360019 SNX3O60493 162 aa18.26■□□□□ 0.51
CLN3-206ENST00000360019 APBB3O95704 486 aa18.26■□□□□ 0.51
CLN3-206ENST00000360019 IGHV4-34P06331 123 aa18.26■□□□□ 0.51
CLN3-206ENST00000360019 NCF1P14598 390 aaPredicted RBP18.26■□□□□ 0.51
CLN3-206ENST00000360019 CD6P30203 668 aa18.26■□□□□ 0.51
CLN3-206ENST00000360019 CCR10P46092 362 aa18.26■□□□□ 0.51
CLN3-206ENST00000360019 CLDN2P57739 230 aa18.26■□□□□ 0.51
CLN3-206ENST00000360019 ZXDAP98168 799 aa18.26■□□□□ 0.51
CLN3-206ENST00000360019 PFKFB4Q16877 469 aa18.26■□□□□ 0.51
CLN3-206ENST00000360019 FAM160A2Q8N612 972 aaPredicted RBP18.26■□□□□ 0.51
CLN3-206ENST00000360019 THOC1Q96FV9 657 aaKnown RBP18.26■□□□□ 0.51
CLN3-206ENST00000360019 APOOQ9BUR5 198 aa18.26■□□□□ 0.51
CLN3-206ENST00000360019 FAM126AQ9BYI3 521 aaPredicted RBP18.26■□□□□ 0.51
CLN3-206ENST00000360019 UTP6Q9NYH9 597 aaKnown RBP18.26■□□□□ 0.51
CLN3-206ENST00000360019 ANKRD12Q6UB98 2062 aa18.25■□□□□ 0.51
CLN3-206ENST00000360019 IGHV1OR15-9A0A0B4J2B8 117 aa18.25■□□□□ 0.51
CLN3-206ENST00000360019 TMEM114B3SHH9 223 aa18.25■□□□□ 0.51
CLN3-206ENST00000360019 ZNF217O75362 1048 aa18.25■□□□□ 0.51
CLN3-206ENST00000360019 POP7O75817 140 aaKnown RBP18.25■□□□□ 0.51
CLN3-206ENST00000360019 MPC1LP0DKB6 136 aa18.25■□□□□ 0.51
CLN3-206ENST00000360019 GFAPP14136 432 aa18.25■□□□□ 0.51
CLN3-206ENST00000360019 HNRNPA2B1P22626 353 aaKnown RBP18.25■□□□□ 0.51
CLN3-206ENST00000360019 OXTRP30559 389 aa18.25■□□□□ 0.51
CLN3-206ENST00000360019 PREPP48147 710 aa18.25■□□□□ 0.51
CLN3-206ENST00000360019 ASPHQ12797 758 aa18.25■□□□□ 0.51
CLN3-206ENST00000360019 PHKG1Q16816 387 aa18.25■□□□□ 0.51
CLN3-206ENST00000360019 PLA2G4EQ3MJ16 856 aa18.25■□□□□ 0.51
CLN3-206ENST00000360019 SYTL3Q4VX76 610 aa18.25■□□□□ 0.51
CLN3-206ENST00000360019 CCNYL1Q8N7R7 359 aa18.25■□□□□ 0.51
CLN3-206ENST00000360019 GLMNQ92990 594 aa18.25■□□□□ 0.51
CLN3-206ENST00000360019 GRAMD1AQ96CP6 724 aa18.25■□□□□ 0.51
CLN3-206ENST00000360019 DRC3Q9H069 523 aa18.25■□□□□ 0.51
CLN3-206ENST00000360019 OARD1Q9Y530 152 aa18.25■□□□□ 0.51
CLN3-206ENST00000360019 H0Y8X5 98 aa18.24■□□□□ 0.51
CLN3-206ENST00000360019 SIX3O95343 332 aaPredicted RBP18.24■□□□□ 0.51
CLN3-206ENST00000360019 FUCA1P04066 466 aa18.24■□□□□ 0.51
CLN3-206ENST00000360019 CHRNGP07510 517 aa18.24■□□□□ 0.51
CLN3-206ENST00000360019 IMPDH1P20839 514 aa18.24■□□□□ 0.51
CLN3-206ENST00000360019 RCN2Q14257 317 aa18.24■□□□□ 0.51
CLN3-206ENST00000360019 ZNF678Q5SXM1 525 aa18.24■□□□□ 0.51
CLN3-206ENST00000360019 GKAP1Q5VSY0 366 aaPredicted RBP18.24■□□□□ 0.51
CLN3-206ENST00000360019 KIAA0895LQ68EN5 471 aa18.24■□□□□ 0.51
CLN3-206ENST00000360019 FRA10AC1Q70Z53 315 aa18.24■□□□□ 0.51
CLN3-206ENST00000360019 RPS27LQ71UM5 84 aaKnown RBP18.24■□□□□ 0.51
CLN3-206ENST00000360019 SPATA21Q7Z572 469 aa18.24■□□□□ 0.51
CLN3-206ENST00000360019 FBXO39Q8N4B4 442 aa18.24■□□□□ 0.51
CLN3-206ENST00000360019 SKA2Q8WVK7 121 aaPredicted RBP18.24■□□□□ 0.51
CLN3-206ENST00000360019 TMEM159Q96B96 161 aa18.24■□□□□ 0.51
CLN3-206ENST00000360019 L3HYPDHQ96EM0 354 aa18.24■□□□□ 0.51
CLN3-206ENST00000360019 BMFQ96LC9 184 aa18.24■□□□□ 0.51
CLN3-206ENST00000360019 GPR174Q9BXC1 333 aa18.24■□□□□ 0.51
CLN3-206ENST00000360019 C17orf113A0A1B0GUU1 675 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 LRRC14BA6NHZ5 514 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 GPR89AB7ZAQ6 455 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 CEACAM5P06731 702 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 GPR89BP0CG08 455 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 PDHA2P29803 388 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 HERVK_113P63132 956 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 FBXO48Q5FWF7 155 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 NEK10Q6ZWH5 1172 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 LRRTM4Q86VH4 590 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 CRLF3Q8IUI8 442 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 CFAP206Q8IYR0 622 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 LSMEM2Q8N112 164 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 OR2L2Q8NH16 312 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 ASB11Q8WXH4 323 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 BIRC7Q96CA5 298 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 SEC16BQ96JE7 1060 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 ERVK-6Q9BXR3 956 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 COG4Q9H9E3 785 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 TM7SF3Q9NS93 570 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 NUDT4Q9NZJ9 180 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 CD274Q9NZQ7 290 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 SLC23A2Q9UGH3 650 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 SLC17A4Q9Y2C5 497 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 BDP1A6H8Y1 2624 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 FPGTO14772 594 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 FFAR2O15552 330 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 GRID2O43424 1007 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 NPHS1O60500 1241 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 FSBPO95073 299 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 TGDSO95455 350 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 PDGFBP01127 241 aaPredicted RBP18.23■□□□□ 0.51
CLN3-206ENST00000360019 GSTM1P09488 218 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 CCR5P51681 352 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 ARHGAP8P85298 464 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 GSTM4Q03013 218 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 UNC50Q53HI1 259 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 ARL13AQ5H913 290 aaPredicted RBP18.23■□□□□ 0.51
CLN3-206ENST00000360019 CWF19L1Q69YN2 538 aaKnown RBP18.23■□□□□ 0.51
CLN3-206ENST00000360019 GCNT7Q6ZNI0 430 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 RASGRP3Q8IV61 690 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 SLC22A15Q8IZD6 547 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 TMEM145Q8NBT3 493 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 GSTO2Q9H4Y5 243 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 NPHS2Q9NP85 383 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms