RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 NLNQ9BYT8 704 aa16.56■□□□□ 0.24
VPS29-204ENST00000548259 CHST8Q9H2A9 424 aa16.56■□□□□ 0.24
VPS29-204ENST00000548259 AKIRIN1Q9H9L7 192 aaPredicted RBP16.56■□□□□ 0.24
VPS29-204ENST00000548259 MAGEE1Q9HCI5 957 aa16.56■□□□□ 0.24
VPS29-204ENST00000548259 LATS2Q9NRM7 1088 aa16.56■□□□□ 0.24
VPS29-204ENST00000548259 SOHLH2Q9NX45 425 aa16.56■□□□□ 0.24
VPS29-204ENST00000548259 LRBAP50851 2863 aa16.56■□□□□ 0.24
VPS29-204ENST00000548259 CACNA1DQ01668 2161 aa16.55■□□□□ 0.24
VPS29-204ENST00000548259 ANKUB1A6NFN9 424 aa16.55■□□□□ 0.24
VPS29-204ENST00000548259 LRRC53A6NM62 1247 aa16.55■□□□□ 0.24
VPS29-204ENST00000548259 TCF4P15884 667 aa16.55■□□□□ 0.24
VPS29-204ENST00000548259 KLHL30Q0D2K2 578 aa16.55■□□□□ 0.24
VPS29-204ENST00000548259 GALNT3Q14435 633 aa16.55■□□□□ 0.24
VPS29-204ENST00000548259 VWA5B1Q5TIE3 1220 aa16.55■□□□□ 0.24
VPS29-204ENST00000548259 LYPLAL1Q5VWZ2 237 aa16.55■□□□□ 0.24
VPS29-204ENST00000548259 NCBP2-AS2Q69YL0 99 aa16.55■□□□□ 0.24
VPS29-204ENST00000548259 AMZ2Q86W34 360 aa16.55■□□□□ 0.24
VPS29-204ENST00000548259 RAB43Q86YS6 212 aa16.55■□□□□ 0.24
VPS29-204ENST00000548259 TTC30BQ8N4P2 665 aa16.55■□□□□ 0.24
VPS29-204ENST00000548259 ENDOVQ8N8Q3 282 aaKnown RBP16.55■□□□□ 0.24
VPS29-204ENST00000548259 GLIS1Q8NBF1 620 aa16.55■□□□□ 0.24
VPS29-204ENST00000548259 KCTD6Q8NC69 237 aa16.55■□□□□ 0.24
VPS29-204ENST00000548259 TM9SF4Q92544 642 aa16.55■□□□□ 0.24
VPS29-204ENST00000548259 CLIP3Q96DZ5 547 aa16.55■□□□□ 0.24
VPS29-204ENST00000548259 IP6K3Q96PC2 410 aa16.55■□□□□ 0.24
VPS29-204ENST00000548259 SMAD5Q99717 465 aaKnown RBP16.55■□□□□ 0.24
VPS29-204ENST00000548259 NUDT9Q9BW91 350 aa16.55■□□□□ 0.24
VPS29-204ENST00000548259 SLC7A5P2Q9GIP4 190 aa16.55■□□□□ 0.24
VPS29-204ENST00000548259 HRASLS2Q9NWW9 162 aa16.55■□□□□ 0.24
VPS29-204ENST00000548259 TCFL5Q9UL49 500 aa16.55■□□□□ 0.24
VPS29-204ENST00000548259 SHOC2Q9UQ13 582 aa16.55■□□□□ 0.24
VPS29-204ENST00000548259 PADI2Q9Y2J8 665 aa16.55■□□□□ 0.24
VPS29-204ENST00000548259 MEN1O00255 615 aa16.54■□□□□ 0.24
VPS29-204ENST00000548259 MTX2O75431 263 aa16.54■□□□□ 0.24
VPS29-204ENST00000548259 CBX6O95503 412 aa16.54■□□□□ 0.24
VPS29-204ENST00000548259 IGHEP01854 428 aa16.54■□□□□ 0.24
VPS29-204ENST00000548259 PER3P56645 1201 aa16.54■□□□□ 0.24
VPS29-204ENST00000548259 SLC25A11Q02978 314 aaKnown RBP16.54■□□□□ 0.24
VPS29-204ENST00000548259 TMEM115Q12893 351 aaPredicted RBP16.54■□□□□ 0.24
VPS29-204ENST00000548259 MMRN1Q13201 1228 aa16.54■□□□□ 0.24
VPS29-204ENST00000548259 GPS2Q13227 327 aa16.54■□□□□ 0.24
VPS29-204ENST00000548259 LAMB3Q13751 1172 aa16.54■□□□□ 0.24
VPS29-204ENST00000548259 IHHQ14623 411 aa16.54■□□□□ 0.24
VPS29-204ENST00000548259 KYNUQ16719 465 aa16.54■□□□□ 0.24
VPS29-204ENST00000548259 ZNF517Q6ZMY9 492 aaPredicted RBP16.54■□□□□ 0.24
VPS29-204ENST00000548259 ZNF571Q7Z3V5 609 aaPredicted RBP16.54■□□□□ 0.24
VPS29-204ENST00000548259 TMC3Q7Z5M5 1100 aa16.54■□□□□ 0.24
VPS29-204ENST00000548259 ZNF547Q8IVP9 402 aa16.54■□□□□ 0.24
VPS29-204ENST00000548259 RBMXL3Q8N7X1 1067 aaKnown RBP16.54■□□□□ 0.24
VPS29-204ENST00000548259 ADAMTS17Q8TE56 1095 aa16.54■□□□□ 0.24
VPS29-204ENST00000548259 ZFPM2Q8WW38 1151 aa16.54■□□□□ 0.24
VPS29-204ENST00000548259 SNRNP40Q96DI7 357 aaKnown RBP16.54■□□□□ 0.24
VPS29-204ENST00000548259 TCTN2Q96GX1 697 aa16.54■□□□□ 0.24
VPS29-204ENST00000548259 VPS35Q96QK1 796 aa16.54■□□□□ 0.24
VPS29-204ENST00000548259 ZNF670Q9BS34 389 aa16.54■□□□□ 0.24
VPS29-204ENST00000548259 ILKAPQ9H0C8 392 aaPredicted RBP16.54■□□□□ 0.24
VPS29-204ENST00000548259 RUBCNLQ9H714 662 aa16.54■□□□□ 0.24
VPS29-204ENST00000548259 SYTL2Q9HCH5 934 aa16.54■□□□□ 0.24
VPS29-204ENST00000548259 ANO10Q9NW15 660 aa16.54■□□□□ 0.24
VPS29-204ENST00000548259 AIPL1Q9NZN9 384 aa16.54■□□□□ 0.24
VPS29-204ENST00000548259 ANAPC7Q9UJX3 599 aa16.54■□□□□ 0.24
VPS29-204ENST00000548259 B3GNT3Q9Y2A9 372 aa16.54■□□□□ 0.24
VPS29-204ENST00000548259 CRYBG3Q68DQ2 2970 aa16.53■□□□□ 0.24
VPS29-204ENST00000548259 OR5K3A6NET4 321 aa16.53■□□□□ 0.24
VPS29-204ENST00000548259 C9J4A7 227 aa16.53■□□□□ 0.24
VPS29-204ENST00000548259 MYO1FO00160 1098 aa16.53■□□□□ 0.24
VPS29-204ENST00000548259 DDX3XO00571 662 aaKnown RBP eCLIP16.53■□□□□ 0.241e-8■■□□□ 11.8
VPS29-204ENST00000548259 IPO13O94829 963 aaKnown RBP16.53■□□□□ 0.24
VPS29-204ENST00000548259 ITGA1P56199 1179 aa16.53■□□□□ 0.24
VPS29-204ENST00000548259 PPP1CAP62136 330 aa16.53■□□□□ 0.24
VPS29-204ENST00000548259 ADCY2Q08462 1091 aa16.53■□□□□ 0.24
VPS29-204ENST00000548259 XRCC4Q13426 336 aa16.53■□□□□ 0.24
VPS29-204ENST00000548259 PDK2Q15119 407 aa16.53■□□□□ 0.24
VPS29-204ENST00000548259 RPE65Q16518 533 aa16.53■□□□□ 0.24
VPS29-204ENST00000548259 TXNRD3NBQ6F5E7 133 aa16.53■□□□□ 0.24
VPS29-204ENST00000548259 SASS6Q6UVJ0 657 aa16.53■□□□□ 0.24
VPS29-204ENST00000548259 SRRM1Q8IYB3 904 aaKnown RBP16.53■□□□□ 0.24
VPS29-204ENST00000548259 BEND7Q8N7W2 519 aaPredicted RBP16.53■□□□□ 0.24
VPS29-204ENST00000548259 FAM71BQ8TC56 605 aa16.53■□□□□ 0.24
VPS29-204ENST00000548259 ZNF501Q96CX3 271 aaPredicted RBP16.53■□□□□ 0.24
VPS29-204ENST00000548259 HDAC11Q96DB2 347 aa16.53■□□□□ 0.24
VPS29-204ENST00000548259 C17orf62Q9BQA9 187 aa16.53■□□□□ 0.24
VPS29-204ENST00000548259 DPH2Q9BQC3 489 aaPredicted RBP16.53■□□□□ 0.24
VPS29-204ENST00000548259 ISCUQ9H1K1 167 aa16.53■□□□□ 0.24
VPS29-204ENST00000548259 CBX8Q9HC52 389 aa16.53■□□□□ 0.24
VPS29-204ENST00000548259 AGPAT4Q9NRZ5 378 aa16.53■□□□□ 0.24
VPS29-204ENST00000548259 DTLQ9NZJ0 730 aa16.53■□□□□ 0.24
VPS29-204ENST00000548259 WDR37Q9Y2I8 494 aa16.53■□□□□ 0.24
VPS29-204ENST00000548259 ZNF711Q9Y462 761 aa16.53■□□□□ 0.24
VPS29-204ENST00000548259 ANKRD17O75179 2603 aaKnown RBP16.52■□□□□ 0.24
VPS29-204ENST00000548259 KRT86O43790 486 aa16.52■□□□□ 0.24
VPS29-204ENST00000548259 CYP2A7P20853 494 aa16.52■□□□□ 0.24
VPS29-204ENST00000548259 PRKCIP41743 596 aa16.52■□□□□ 0.24
VPS29-204ENST00000548259 TNNT3P45378 269 aaPredicted RBP16.52■□□□□ 0.24
VPS29-204ENST00000548259 RIPPLY3P57055 190 aa16.52■□□□□ 0.24
VPS29-204ENST00000548259 CDK18Q07002 472 aa16.52■□□□□ 0.24
VPS29-204ENST00000548259 DMPKQ09013 629 aa16.52■□□□□ 0.24
VPS29-204ENST00000548259 PRKAA1Q13131 559 aa16.52■□□□□ 0.24
VPS29-204ENST00000548259 DPYSL3Q14195 570 aa16.52■□□□□ 0.24
VPS29-204ENST00000548259 GPR19Q15760 415 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 106.5 ms