RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 NRP1O14786 923 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 BUD23O43709 281 aaKnown RBP10.35□□□□□ -0.75
LIG1-220ENST00000601091 NPHS1O60500 1241 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 NDUFS6O75380 124 aaKnown RBP10.35□□□□□ -0.75
LIG1-220ENST00000601091 NAGAP17050 411 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 MAPK10P53779 464 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 PITX1P78337 314 aaPredicted RBP10.35□□□□□ -0.75
LIG1-220ENST00000601091 MAP2K5Q13163 448 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 CYP51A1Q16850 503 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 ADGRG6Q86SQ4 1221 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 MMAAQ8IVH4 418 aaKnown RBP10.35□□□□□ -0.75
LIG1-220ENST00000601091 CENPIQ92674 756 aaPredicted RBP10.35□□□□□ -0.75
LIG1-220ENST00000601091 GPR22Q99680 433 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 ADAM2Q99965 735 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 C9orf16Q9BUW7 83 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 OSBPL11Q9BXB4 747 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 GPR63Q9BZJ6 419 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 ZYG11BQ9C0D3 744 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 WNT5BQ9H1J7 359 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 GMEB2Q9UKD1 530 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 PKP3Q9Y446 797 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 PCDHB5Q9Y5E4 795 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 ANKRD12Q6UB98 2062 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 LOXHD1Q8IVV2 1947 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 PRRT4C9JH25 899 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 VPS4BO75351 444 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 AMHP03971 560 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 FOSL2P15408 326 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 YWHAQP27348 245 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 SLC7A2P52569 658 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 RAB14P61106 215 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 ZNF460Q14592 562 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 SGO1Q5FBB7 561 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 CXCL17Q6UXB2 119 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 ELMOD1Q8N336 334 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 ZNF555Q8NEP9 628 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 HEXDCQ8WVB3 486 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 FCRL3Q96P31 734 aaPredicted RBP10.34□□□□□ -0.75
LIG1-220ENST00000601091 PGLYRP2Q96PD5 576 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 FCRL5Q96RD9 977 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 KCTD14Q9BQ13 255 aaPredicted RBP10.34□□□□□ -0.75
LIG1-220ENST00000601091 ZFYVE28Q9HCC9 887 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 TLR8Q9NR97 1041 aaKnown RBP10.34□□□□□ -0.75
LIG1-220ENST00000601091 LATS2Q9NRM7 1088 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 ZFP57Q9NU63 452 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 CPNE7Q9UBL6 633 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 LTBP4Q8N2S1 1624 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 ARFGEF1Q9Y6D6 1849 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 A0A087WXM4 84 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.34□□□□□ -0.75
LIG1-220ENST00000601091 MSI1O43347 362 aaKnown RBP10.34□□□□□ -0.75
LIG1-220ENST00000601091 NIPSNAP2O75323 286 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 FKBP9O95302 570 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 AHSGP02765 367 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 HTR7P34969 479 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 CHRNB3Q05901 458 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 ZNF177Q13360 481 aaPredicted RBP10.34□□□□□ -0.75
LIG1-220ENST00000601091 PSMD5Q16401 504 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 AARS2Q5JTZ9 985 aaKnown RBP10.34□□□□□ -0.75
LIG1-220ENST00000601091 ZNF467Q7Z7K2 595 aaPredicted RBP10.34□□□□□ -0.75
LIG1-220ENST00000601091 TMEM135Q86UB9 458 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 THUMPD3Q9BV44 507 aaKnown RBP10.34□□□□□ -0.75
LIG1-220ENST00000601091 TRIM54Q9BYV2 358 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 UNC93B1Q9H1C4 597 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 TIMMDC1Q9NPL8 285 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 UXTQ9UBK9 157 aaPredicted RBP10.34□□□□□ -0.75
LIG1-220ENST00000601091 PDHA2P29803 388 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 EEF1A1P68104 462 aaKnown RBP10.34□□□□□ -0.75
LIG1-220ENST00000601091 EEF1A2Q05639 463 aaKnown RBP10.34□□□□□ -0.75
LIG1-220ENST00000601091 GALNT2Q10471 571 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 MADCAM1Q13477 382 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 LPIN1Q14693 890 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 FAM110CQ1W6H9 321 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 HECTD2Q5U5R9 776 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 EEF1A1P5Q5VTE0 462 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 IL23RQ5VWK5 629 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 TAPT1Q6NXT6 567 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 PDSS2Q86YH6 399 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 HCAR2Q8TDS4 363 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 LPGAT1Q92604 370 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 SEMA3CQ99985 751 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 WDR83Q9BRX9 315 aaKnown RBP10.34□□□□□ -0.75
LIG1-220ENST00000601091 DCUN1D5Q9BTE7 237 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 OLA1Q9NTK5 396 aaKnown RBP10.34□□□□□ -0.75
LIG1-220ENST00000601091 PAQR5Q9NXK6 330 aaPredicted RBP10.34□□□□□ -0.75
LIG1-220ENST00000601091 MARCH2Q9P0N8 246 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 MTRRQ9UBK8 725 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 REV1Q9UBZ9 1251 aa10.34□□□□□ -0.75
LIG1-220ENST00000601091 DLX3O60479 287 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 POP4O95707 220 aaKnown RBP10.33□□□□□ -0.76
LIG1-220ENST00000601091 LDLRP01130 860 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 XRCC1P18887 633 aaPredicted RBP10.33□□□□□ -0.76
LIG1-220ENST00000601091 ETV5P41161 510 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 NUP107P57740 925 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 ADGRE1Q14246 886 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 PPM1LQ5SGD2 360 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 CDH24Q86UP0 819 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 KLHL5Q96PQ7 755 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 SEPHS2Q99611 448 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 ACBD6Q9BR61 282 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms