RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 DSC2Q02487 901 aa16.63■□□□□ 0.25
VPS29-204ENST00000548259 SEPT7Q16181 437 aaKnown RBP16.63■□□□□ 0.25
VPS29-204ENST00000548259 ZNF787Q6DD87 383 aa16.63■□□□□ 0.25
VPS29-204ENST00000548259 PWWP2BQ6NUJ5 590 aa16.63■□□□□ 0.25
VPS29-204ENST00000548259 JMJD6Q6NYC1 403 aaPredicted RBP16.63■□□□□ 0.25
VPS29-204ENST00000548259 CRTC3Q6UUV7 619 aa16.63■□□□□ 0.25
VPS29-204ENST00000548259 ABRAXAS1Q6UWZ7 409 aa16.63■□□□□ 0.25
VPS29-204ENST00000548259 KMT5CQ86Y97 462 aa16.63■□□□□ 0.25
VPS29-204ENST00000548259 TEKT4Q8WW24 435 aa16.63■□□□□ 0.25
VPS29-204ENST00000548259 ZNF653Q96CK0 615 aa16.63■□□□□ 0.25
VPS29-204ENST00000548259 SMIM14Q96QK8 99 aa16.63■□□□□ 0.25
VPS29-204ENST00000548259 ERGIC2Q96RQ1 377 aa16.63■□□□□ 0.25
VPS29-204ENST00000548259 TIMM29Q9BSF4 260 aa16.63■□□□□ 0.25
VPS29-204ENST00000548259 SLC40A1Q9NP59 571 aa16.63■□□□□ 0.25
VPS29-204ENST00000548259 RBM22Q9NW64 420 aaKnown RBP eCLIP16.63■□□□□ 0.252e-8■□□□□ 9.5
VPS29-204ENST00000548259 ZNF624Q9P2J8 865 aaPredicted RBP16.63■□□□□ 0.25
VPS29-204ENST00000548259 DNAJC16Q9Y2G8 782 aa16.63■□□□□ 0.25
VPS29-204ENST00000548259 PRRC2CQ9Y520 2896 aaKnown RBP16.63■□□□□ 0.25
VPS29-204ENST00000548259 KIF1CO43896 1103 aaKnown RBP16.62■□□□□ 0.25
VPS29-204ENST00000548259 VEGFDO43915 354 aa16.62■□□□□ 0.25
VPS29-204ENST00000548259 CPNE3O75131 537 aaKnown RBP16.62■□□□□ 0.25
VPS29-204ENST00000548259 GZMAP12544 262 aa16.62■□□□□ 0.25
VPS29-204ENST00000548259 LPOP22079 712 aaPredicted RBP16.62■□□□□ 0.25
VPS29-204ENST00000548259 DCTP40126 519 aa16.62■□□□□ 0.25
VPS29-204ENST00000548259 ELOAQ14241 798 aaKnown RBP16.62■□□□□ 0.25
VPS29-204ENST00000548259 GPR18Q14330 331 aa16.62■□□□□ 0.25
VPS29-204ENST00000548259 PIGHQ14442 188 aaPredicted RBP16.62■□□□□ 0.25
VPS29-204ENST00000548259 AGAP9Q5VTM2 703 aa16.62■□□□□ 0.25
VPS29-204ENST00000548259 CPZQ66K79 652 aa16.62■□□□□ 0.25
VPS29-204ENST00000548259 WASH2PQ6VEQ5 465 aa16.62■□□□□ 0.25
VPS29-204ENST00000548259 OR8K5Q8NH50 307 aa16.62■□□□□ 0.25
VPS29-204ENST00000548259 RSC1A1Q92681 617 aa16.62■□□□□ 0.25
VPS29-204ENST00000548259 MR1Q95460 341 aa16.62■□□□□ 0.25
VPS29-204ENST00000548259 FATE1Q969F0 183 aa16.62■□□□□ 0.25
VPS29-204ENST00000548259 PNPLA2Q96AD5 504 aa16.62■□□□□ 0.25
VPS29-204ENST00000548259 SLC41A2Q96JW4 573 aa16.62■□□□□ 0.25
VPS29-204ENST00000548259 ZNF514Q96K75 400 aaPredicted RBP16.62■□□□□ 0.25
VPS29-204ENST00000548259 C5orf34Q96MH7 638 aa16.62■□□□□ 0.25
VPS29-204ENST00000548259 WDR24Q96S15 920 aa16.62■□□□□ 0.25
VPS29-204ENST00000548259 TRIM7Q9C029 511 aa16.62■□□□□ 0.25
VPS29-204ENST00000548259 WASH6PQ9NQA3 447 aa16.62■□□□□ 0.25
VPS29-204ENST00000548259 FGF21Q9NSA1 209 aa16.62■□□□□ 0.25
VPS29-204ENST00000548259 IGSF5Q9NSI5 407 aa16.62■□□□□ 0.25
VPS29-204ENST00000548259 FANCLQ9NW38 375 aa16.62■□□□□ 0.25
VPS29-204ENST00000548259 SCHIP1Q9P0W5 487 aaPredicted RBP16.62■□□□□ 0.25
VPS29-204ENST00000548259 SPENQ96T58 3664 aaKnown RBP16.62■□□□□ 0.25
VPS29-204ENST00000548259 ESPL1Q14674 2120 aa16.61■□□□□ 0.25
VPS29-204ENST00000548259 SSU72P8A0A1W2PR75 194 aa16.61■□□□□ 0.25
VPS29-204ENST00000548259 ANKRD66B4E2M5 251 aa16.61■□□□□ 0.25
VPS29-204ENST00000548259 CHUKO15111 745 aa16.61■□□□□ 0.25
VPS29-204ENST00000548259 RARAP10276 462 aa16.61■□□□□ 0.25
VPS29-204ENST00000548259 IL1R2P27930 398 aa16.61■□□□□ 0.25
VPS29-204ENST00000548259 RRADP55042 308 aa16.61■□□□□ 0.25
VPS29-204ENST00000548259 DCDC1P59894 354 aa16.61■□□□□ 0.25
VPS29-204ENST00000548259 CHAF1BQ13112 559 aa16.61■□□□□ 0.25
VPS29-204ENST00000548259 MRPL49Q13405 166 aaKnown RBP16.61■□□□□ 0.25
VPS29-204ENST00000548259 GTF2H3Q13889 308 aa16.61■□□□□ 0.25
VPS29-204ENST00000548259 IFI16Q16666 785 aaKnown RBP16.61■□□□□ 0.25
VPS29-204ENST00000548259 PLA2G4EQ3MJ16 856 aa16.61■□□□□ 0.25
VPS29-204ENST00000548259 IRF2BP2Q7Z5L9 587 aa16.61■□□□□ 0.25
VPS29-204ENST00000548259 ADGRG6Q86SQ4 1221 aa16.61■□□□□ 0.25
VPS29-204ENST00000548259 TMEM126BQ8IUX1 230 aa16.61■□□□□ 0.25
VPS29-204ENST00000548259 TRAM1L1Q8N609 369 aa16.61■□□□□ 0.25
VPS29-204ENST00000548259 MAML1Q92585 1016 aa16.61■□□□□ 0.25
VPS29-204ENST00000548259 GLYATL1Q969I3 302 aa16.61■□□□□ 0.25
VPS29-204ENST00000548259 CD180Q99467 661 aa16.61■□□□□ 0.25
VPS29-204ENST00000548259 ZFYVE1Q9HBF4 777 aa16.61■□□□□ 0.25
VPS29-204ENST00000548259 PCDH18Q9HCL0 1135 aa16.61■□□□□ 0.25
VPS29-204ENST00000548259 MYO1AQ9UBC5 1043 aa16.61■□□□□ 0.25
VPS29-204ENST00000548259 LIMA1Q9UHB6 759 aaKnown RBP16.61■□□□□ 0.25
VPS29-204ENST00000548259 SNX7Q9UNH6 387 aa16.61■□□□□ 0.25
VPS29-204ENST00000548259 SLC5A6Q9Y289 635 aa16.61■□□□□ 0.25
VPS29-204ENST00000548259 ADGRG1Q9Y653 693 aa16.61■□□□□ 0.25
VPS29-204ENST00000548259 DOPEY1Q5JWR5 2465 aa16.61■□□□□ 0.25
VPS29-204ENST00000548259 TEP1Q99973 2627 aaKnown RBP16.6■□□□□ 0.25
VPS29-204ENST00000548259 CDK14O94921 469 aa16.6■□□□□ 0.25
VPS29-204ENST00000548259 TIAF1O95411 115 aa16.6■□□□□ 0.25
VPS29-204ENST00000548259 PRLP01236 227 aa16.6■□□□□ 0.25
VPS29-204ENST00000548259 JCHAINP01591 159 aa16.6■□□□□ 0.25
VPS29-204ENST00000548259 RNF224P0DH78 156 aa16.6■□□□□ 0.25
VPS29-204ENST00000548259 FOLR1P15328 257 aa16.6■□□□□ 0.25
VPS29-204ENST00000548259 CCNCP24863 283 aa16.6■□□□□ 0.25
VPS29-204ENST00000548259 RPL10P27635 214 aaKnown RBP16.6■□□□□ 0.25
VPS29-204ENST00000548259 GSDMDP57764 484 aa16.6■□□□□ 0.25
VPS29-204ENST00000548259 RPS18P62269 152 aaKnown RBP16.6■□□□□ 0.25
VPS29-204ENST00000548259 HSD11B2P80365 405 aa16.6■□□□□ 0.25
VPS29-204ENST00000548259 GALNT2Q10471 571 aa16.6■□□□□ 0.25
VPS29-204ENST00000548259 TMTC4Q5T4D3 741 aa16.6■□□□□ 0.25
VPS29-204ENST00000548259 IZUMO3Q5VZ72 239 aa16.6■□□□□ 0.25
VPS29-204ENST00000548259 FAM199XQ6PEV8 388 aaPredicted RBP16.6■□□□□ 0.25
VPS29-204ENST00000548259 MED25Q71SY5 747 aa16.6■□□□□ 0.25
VPS29-204ENST00000548259 TICAM1Q8IUC6 712 aa16.6■□□□□ 0.25
VPS29-204ENST00000548259 IQCKQ8N0W5 287 aa16.6■□□□□ 0.25
VPS29-204ENST00000548259 TMEM102Q8N9M5 508 aaPredicted RBP16.6■□□□□ 0.25
VPS29-204ENST00000548259 TTC25Q96NG3 672 aa16.6■□□□□ 0.25
VPS29-204ENST00000548259 ARFGAP3Q9NP61 516 aa16.6■□□□□ 0.25
VPS29-204ENST00000548259 GPR83Q9NYM4 423 aa16.6■□□□□ 0.25
VPS29-204ENST00000548259 TMEM63CQ9P1W3 806 aa16.6■□□□□ 0.25
VPS29-204ENST00000548259 SEMA5BQ9P283 1151 aa16.6■□□□□ 0.25
VPS29-204ENST00000548259 SLC23A2Q9UGH3 650 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 84.8 ms