RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 CDH13P55290 713 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 TBL3Q12788 808 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 ZNF605Q86T29 641 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 SLC43A3Q8NBI5 491 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 SPPL2AQ8TCT8 520 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 C8orf48Q96LL4 319 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 TEPSINQ96N21 525 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 HERPUD2Q9BSE4 406 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 PTGFRNQ9P2B2 879 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 TNFSF15O95150 251 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 GOT1P17174 413 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 PAICSP22234 425 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 SERPINB3P29508 390 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 SRP14P37108 136 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 MPLP40238 635 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 NEK5Q6P3R8 708 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 C19orf48Q6RUI8 117 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 WDR53Q7Z5U6 358 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 PSTKQ8IV42 348 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 SDR16C5Q8N3Y7 309 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 DNAAF1Q8NEP3 725 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 OR4K2Q8NGD2 314 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 FNIP1Q8TF40 1166 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 HNRNPLLQ8WVV9 542 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 WARS2Q9UGM6 360 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 PAIP2BQ9ULR5 123 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 C2CD4DB7Z1M9 353 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 EEF1E1-BLOC1S5C9J1V9 151 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 WWP2O00308 870 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 PRRG2O14669 202 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 EEF1E1O43324 174 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 ERBB2P04626 1255 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 ANPEPP15144 967 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 ZNF37AP17032 561 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 TPP2P29144 1249 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 ZNF143P52747 638 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 VSX2P58304 361 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 PARP6Q2NL67 630 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 SPANXN3Q5MJ09 141 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 GPR149Q86SP6 731 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 ADAMTSL2Q86TH1 951 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 PPP1R3BQ86XI6 285 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 MCOLN2Q8IZK6 566 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 ZNF527Q8NB42 609 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 NETO2Q8NC67 525 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 UCN3Q969E3 161 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 ARL5BQ96KC2 179 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 TMEM120AQ9BXJ8 343 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 PITPNM3Q9BZ71 974 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 MKKSQ9NPJ1 570 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 MED4Q9NPJ6 270 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 MRGBPQ9NV56 204 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 PCYOX1Q9UHG3 505 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 WDR27A2RRH5 827 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 IGLON5A6NGN9 336 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 LMO2P25791 158 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 SLC26A3P40879 764 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 KCNQ1P51787 676 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 MGAT5Q09328 741 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 KLHL26Q53HC5 615 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 FAM69BQ5VUD6 431 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 GTF2IRD2BQ6EKJ0 949 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 UNQ6126/PRO20091Q6UXV3 157 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 GTF2IRD2Q86UP8 949 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 CLEC4FQ8N1N0 589 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 ZNF611Q8N823 705 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 NLGN4YQ8NFZ3 816 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 SH3GL1Q99961 368 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 DCTN4Q9UJW0 460 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 BTBD17A6NE02 478 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 IQCF5A8MTL0 148 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 FAM155AB1AL88 458 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 MAGEB3O15480 346 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 PROS1P07225 676 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 ADRB2P07550 413 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 ITIH2P19823 946 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 ERVFC1P60507 584 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 MRPS25P82663 173 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 LCTLQ6UWM7 567 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 NYAP1Q6ZVC0 841 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 MFSD6LQ8IWD5 586 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 SEC14L1Q92503 715 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 KLHL29Q96CT2 875 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 ASB2Q96Q27 587 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 SNRNP25Q9BV90 132 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 MID1IP1Q9NPA3 183 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 PSMC3IPQ9P2W1 217 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 COPG1Q9Y678 874 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 TRIM43BA6NCK2 446 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 FFAR3O14843 346 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 GPR42O15529 346 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 TULP3O75386 442 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 NDST3O95803 873 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 NR1D1P20393 614 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 PSMB4P28070 264 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 HTR7P34969 479 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 MEA1Q16626 185 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 FAM91A1Q658Y4 838 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 NOXRED1Q6NXP6 359 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 CES3Q6UWW8 571 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms