RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 LMOD3Q0VAK6 560 aa18.5■□□□□ 0.55
CLN3-242ENST00000635958 STRN4Q9NRL3 753 aa18.5■□□□□ 0.55
CLN3-242ENST00000635958 CRB1P82279 1406 aa18.5■□□□□ 0.55
CLN3-242ENST00000635958 PLEKHO1Q53GL0 409 aaPredicted RBP18.49■□□□□ 0.55
CLN3-242ENST00000635958 TRMT2AQ8IZ69 625 aaKnown RBP18.49■□□□□ 0.55
CLN3-242ENST00000635958 RAPGEF4Q8WZA2 1011 aa18.49■□□□□ 0.55
CLN3-242ENST00000635958 CDCA7LQ96GN5 454 aa18.49■□□□□ 0.55
CLN3-242ENST00000635958 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.49■□□□□ 0.55
CLN3-242ENST00000635958 NWD2Q9ULI1 1742 aa18.49■□□□□ 0.55
CLN3-242ENST00000635958 HTATSF1O43719 755 aaKnown RBP18.49■□□□□ 0.55
CLN3-242ENST00000635958 SLFN5Q08AF3 891 aa18.49■□□□□ 0.55
CLN3-242ENST00000635958 PLCH1Q4KWH8 1693 aa18.49■□□□□ 0.55
CLN3-242ENST00000635958 LRP6O75581 1613 aa18.48■□□□□ 0.55
CLN3-242ENST00000635958 DLG5Q8TDM6 1919 aa18.48■□□□□ 0.55
CLN3-242ENST00000635958 IL16Q14005 1332 aa18.48■□□□□ 0.55
CLN3-242ENST00000635958 FNBP4Q8N3X1 1017 aaPredicted RBP18.48■□□□□ 0.55
CLN3-242ENST00000635958 NRAPQ86VF7 1730 aa18.47■□□□□ 0.55
CLN3-242ENST00000635958 E9PSI1 815 aa18.46■□□□□ 0.55
CLN3-242ENST00000635958 TATP17735 454 aaPredicted RBP18.46■□□□□ 0.55
CLN3-242ENST00000635958 ANP32EQ9BTT0 268 aa18.46■□□□□ 0.55
CLN3-242ENST00000635958 SPINK5Q9NQ38 1064 aaPredicted RBP18.46■□□□□ 0.55
CLN3-242ENST00000635958 MEGF6O75095 1541 aa18.45■□□□□ 0.54
CLN3-242ENST00000635958 NGLY1Q96IV0 654 aa18.45■□□□□ 0.54
CLN3-242ENST00000635958 GNAT3A8MTJ3 354 aa18.44■□□□□ 0.54
CLN3-242ENST00000635958 CALD1Q05682 793 aaKnown RBP18.44■□□□□ 0.54
CLN3-242ENST00000635958 DUSP27Q5VZP5 1158 aa18.44■□□□□ 0.54
CLN3-242ENST00000635958 RGS17Q9UGC6 210 aaPredicted RBP18.44■□□□□ 0.54
CLN3-242ENST00000635958 UNC5CLQ8IV45 518 aa18.44■□□□□ 0.54
CLN3-242ENST00000635958 OVOS2A0A0G2JMS6 1433 aa18.43■□□□□ 0.54
CLN3-242ENST00000635958 BCL9LQ86UU0 1499 aa18.43■□□□□ 0.54
CLN3-242ENST00000635958 MAP3K5Q99683 1374 aa18.43■□□□□ 0.54
CLN3-242ENST00000635958 IL2RBP14784 551 aa18.43■□□□□ 0.54
CLN3-242ENST00000635958 AKAP4Q5JQC9 854 aa18.43■□□□□ 0.54
CLN3-242ENST00000635958 C8orf37Q96NL8 207 aa18.43■□□□□ 0.54
CLN3-242ENST00000635958 SPG7Q9UQ90 795 aa18.43■□□□□ 0.54
CLN3-242ENST00000635958 ZNF530Q6P9A1 599 aaPredicted RBP18.42■□□□□ 0.54
CLN3-242ENST00000635958 RTF1Q92541 710 aaKnown RBP18.42■□□□□ 0.54
CLN3-242ENST00000635958 THRAP3Q9Y2W1 955 aaKnown RBP18.42■□□□□ 0.54
CLN3-242ENST00000635958 SPATA31A1Q5TZJ5 1347 aa18.41■□□□□ 0.54
CLN3-242ENST00000635958 SPATA31A5Q5VU36 1347 aa18.41■□□□□ 0.54
CLN3-242ENST00000635958 SPATA31A7Q8IWB4 1347 aa18.41■□□□□ 0.54
CLN3-242ENST00000635958 PKD1L3Q7Z443 1732 aa18.4■□□□□ 0.54
CLN3-242ENST00000635958 DISP2A7MBM2 1401 aa18.4■□□□□ 0.54
CLN3-242ENST00000635958 ZNF853P0CG23 659 aa18.4■□□□□ 0.54
CLN3-242ENST00000635958 DCTN1Q14203 1278 aa18.4■□□□□ 0.54
CLN3-242ENST00000635958 IL17REQ8NFR9 667 aa18.4■□□□□ 0.54
CLN3-242ENST00000635958 THUMPD2Q9BTF0 503 aaKnown RBP18.4■□□□□ 0.54
CLN3-242ENST00000635958 PARP4Q9UKK3 1724 aaKnown RBP18.4■□□□□ 0.54
CLN3-242ENST00000635958 VPS72Q15906 364 aa18.39■□□□□ 0.54
CLN3-242ENST00000635958 MCM10Q7L590 875 aa18.39■□□□□ 0.54
CLN3-242ENST00000635958 MYH16Q9H6N6 1097 aa18.39■□□□□ 0.54
CLN3-242ENST00000635958 IFT57Q9NWB7 429 aa18.39■□□□□ 0.54
CLN3-242ENST00000635958 C1orf141Q5JVX7 400 aa18.39■□□□□ 0.53
CLN3-242ENST00000635958 ZCRB1Q8TBF4 217 aaKnown RBP18.39■□□□□ 0.53
CLN3-242ENST00000635958 CEMIPQ8WUJ3 1361 aa18.39■□□□□ 0.53
CLN3-242ENST00000635958 GNAI1P63096 354 aa18.38■□□□□ 0.53
CLN3-242ENST00000635958 MEX3CQ5U5Q3 659 aaKnown RBP18.38■□□□□ 0.53
CLN3-242ENST00000635958 CFAP44Q96MT7 982 aa18.38■□□□□ 0.53
CLN3-242ENST00000635958 CDCA7Q9BWT1 371 aaPredicted RBP18.38■□□□□ 0.53
CLN3-242ENST00000635958 USP35Q9P2H5 1018 aa18.38■□□□□ 0.53
CLN3-242ENST00000635958 PHKG2P15735 406 aa18.37■□□□□ 0.53
CLN3-242ENST00000635958 BARGINQ6ZT62 677 aa18.37■□□□□ 0.53
CLN3-242ENST00000635958 IFNL2Q8IZJ0 200 aa18.37■□□□□ 0.53
CLN3-242ENST00000635958 USP21Q9UK80 565 aa18.37■□□□□ 0.53
CLN3-242ENST00000635958 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.37■□□□□ 0.53
CLN3-242ENST00000635958 CYP27B1O15528 508 aa18.37■□□□□ 0.53
CLN3-242ENST00000635958 CHL1O00533 1208 aa18.35■□□□□ 0.53
CLN3-242ENST00000635958 ADAMTS7Q9UKP4 1686 aa18.35■□□□□ 0.53
CLN3-242ENST00000635958 LRRC37A3O60309 1634 aa18.35■□□□□ 0.53
CLN3-242ENST00000635958 PCDH11XQ9BZA7 1347 aa18.35■□□□□ 0.53
CLN3-242ENST00000635958 PCDH11YQ9BZA8 1340 aa18.35■□□□□ 0.53
CLN3-242ENST00000635958 FANCIQ9NVI1 1328 aa18.35■□□□□ 0.53
CLN3-242ENST00000635958 RNMTO43148 476 aaKnown RBP18.35■□□□□ 0.53
CLN3-242ENST00000635958 POTEAQ6S8J7 498 aa18.35■□□□□ 0.53
CLN3-242ENST00000635958 LGR6Q9HBX8 967 aa18.35■□□□□ 0.53
CLN3-242ENST00000635958 BABAM1Q9NWV8 329 aa18.35■□□□□ 0.53
CLN3-242ENST00000635958 AFF2P51816 1311 aa18.34■□□□□ 0.53
CLN3-242ENST00000635958 HSP90AB1P08238 724 aaKnown RBP18.34■□□□□ 0.53
CLN3-242ENST00000635958 NKX1-1Q15270 411 aaPredicted RBP18.34■□□□□ 0.53
CLN3-242ENST00000635958 MPRIPQ6WCQ1 1025 aa18.34■□□□□ 0.53
CLN3-242ENST00000635958 TAF7Q15545 349 aaPredicted RBP18.33■□□□□ 0.52
CLN3-242ENST00000635958 TSR2Q969E8 191 aaKnown RBP18.33■□□□□ 0.52
CLN3-242ENST00000635958 DCAF5Q96JK2 942 aa18.33■□□□□ 0.52
CLN3-242ENST00000635958 WNK3Q9BYP7 1800 aa18.32■□□□□ 0.52
CLN3-242ENST00000635958 MBIPQ9NS73 344 aa18.32■□□□□ 0.52
CLN3-242ENST00000635958 CCDC9Q9Y3X0 531 aaKnown RBP18.32■□□□□ 0.52
CLN3-242ENST00000635958 RBM19Q9Y4C8 960 aaKnown RBP18.32■□□□□ 0.52
CLN3-242ENST00000635958 SHANK3Q9BYB0 1731 aa18.32■□□□□ 0.52
CLN3-242ENST00000635958 EXOC5O00471 708 aa18.31■□□□□ 0.52
CLN3-242ENST00000635958 LAS1LQ9Y4W2 734 aaKnown RBP18.31■□□□□ 0.52
CLN3-242ENST00000635958 CT47B1P0C2W7 299 aaPredicted RBP18.3■□□□□ 0.52
CLN3-242ENST00000635958 KDM6AO15550 1401 aaPredicted RBP18.3■□□□□ 0.52
CLN3-242ENST00000635958 ATRNO75882 1429 aa18.3■□□□□ 0.52
CLN3-242ENST00000635958 RCAN3Q9UKA8 241 aa18.3■□□□□ 0.52
CLN3-242ENST00000635958 SCN11AQ9UI33 1791 aa18.29■□□□□ 0.52
CLN3-242ENST00000635958 EXOSC9Q06265 439 aaKnown RBP18.29■□□□□ 0.52
CLN3-242ENST00000635958 TRPC5Q9UL62 973 aaPredicted RBP18.29■□□□□ 0.52
CLN3-242ENST00000635958 TNS2Q63HR2 1409 aa18.28■□□□□ 0.52
CLN3-242ENST00000635958 VIRMAQ69YN4 1812 aaKnown RBP18.28■□□□□ 0.52
CLN3-242ENST00000635958 TEFQ10587 303 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms