RNA–Protein interactions for RNA: ENST00000605814.1

HMGB1P50-201, Transcript of high mobility group box 1 pseudogene 50, humanhuman

BASIC

Gene HMGB1P50, Length 607 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P50-201ENST00000605814 PTGIRP43119 386 aa5.99□□□□□ -1.45
HMGB1P50-201ENST00000605814 SUZ12Q15022 739 aaKnown RBP5.99□□□□□ -1.45
HMGB1P50-201ENST00000605814 GPAT2Q6NUI2 795 aa5.99□□□□□ -1.45
HMGB1P50-201ENST00000605814 PRICKLE2Q7Z3G6 844 aa5.99□□□□□ -1.45
HMGB1P50-201ENST00000605814 MEN1O00255 615 aa5.98□□□□□ -1.45
HMGB1P50-201ENST00000605814 PRKCSHP14314 528 aaPredicted RBP5.98□□□□□ -1.45
HMGB1P50-201ENST00000605814 PPP2R2DQ66LE6 453 aa5.98□□□□□ -1.45
HMGB1P50-201ENST00000605814 KANK3Q6NY19 840 aa5.98□□□□□ -1.45
HMGB1P50-201ENST00000605814 RIPOR1Q6ZS17 1223 aa5.98□□□□□ -1.45
HMGB1P50-201ENST00000605814 GNL3Q9BVP2 549 aaKnown RBP eCLIP5.98□□□□□ -1.45
HMGB1P50-201ENST00000605814 PCDHB9Q9Y5E1 797 aa5.98□□□□□ -1.45
HMGB1P50-201ENST00000605814 ATP5J2-PTCD1G3V325 749 aa5.97□□□□□ -1.45
HMGB1P50-201ENST00000605814 SLURP2P0DP57 97 aa5.97□□□□□ -1.45
HMGB1P50-201ENST00000605814 RHOQP17081 205 aa5.97□□□□□ -1.45
HMGB1P50-201ENST00000605814 SLC27A3Q5K4L6 730 aa5.97□□□□□ -1.45
HMGB1P50-201ENST00000605814 FOXD4L5Q5VV16 416 aaPredicted RBP5.97□□□□□ -1.45
HMGB1P50-201ENST00000605814 PODNQ7Z5L7 613 aa5.97□□□□□ -1.45
HMGB1P50-201ENST00000605814 SEPT12Q8IYM1 358 aa5.97□□□□□ -1.45
HMGB1P50-201ENST00000605814 EPS8L1Q8TE68 723 aa5.97□□□□□ -1.45
HMGB1P50-201ENST00000605814 WHAMMQ8TF30 809 aa5.97□□□□□ -1.45
HMGB1P50-201ENST00000605814 FAM117AQ9C073 453 aa5.97□□□□□ -1.45
HMGB1P50-201ENST00000605814 HMX1Q9NP08 348 aaPredicted RBP5.97□□□□□ -1.45
HMGB1P50-201ENST00000605814 DNMT3AQ9Y6K1 912 aaPredicted RBP5.97□□□□□ -1.45
HMGB1P50-201ENST00000605814 SRSF11Q05519 484 aaKnown RBP5.96□□□□□ -1.46
HMGB1P50-201ENST00000605814 PCMTD1Q96MG8 357 aaPredicted RBP5.96□□□□□ -1.46
HMGB1P50-201ENST00000605814 NLRP3Q96P20 1036 aa5.96□□□□□ -1.46
HMGB1P50-201ENST00000605814 TRERF1Q96PN7 1200 aa5.96□□□□□ -1.46
HMGB1P50-201ENST00000605814 OCSTAMPQ9BR26 566 aa5.96□□□□□ -1.46
HMGB1P50-201ENST00000605814 SENP3-EIF4A1A0A087X0R7 540 aa5.95□□□□□ -1.46
HMGB1P50-201ENST00000605814 H7C1W4 665 aa5.95□□□□□ -1.46
HMGB1P50-201ENST00000605814 IGHA1P01876 353 aa5.95□□□□□ -1.46
HMGB1P50-201ENST00000605814 ADD1P35611 737 aaKnown RBP5.95□□□□□ -1.46
HMGB1P50-201ENST00000605814 RFC5P40937 340 aa5.95□□□□□ -1.46
HMGB1P50-201ENST00000605814 FOXK2Q01167 660 aa5.95□□□□□ -1.46
HMGB1P50-201ENST00000605814 NEDD1Q8NHV4 660 aa5.95□□□□□ -1.46
HMGB1P50-201ENST00000605814 GAS2L1Q99501 681 aaPredicted RBP5.95□□□□□ -1.46
HMGB1P50-201ENST00000605814 PHF20L1A8MW92 1017 aa5.94□□□□□ -1.46
HMGB1P50-201ENST00000605814 LILRA1O75019 489 aa5.94□□□□□ -1.46
HMGB1P50-201ENST00000605814 GSK3AP49840 483 aa5.94□□□□□ -1.46
HMGB1P50-201ENST00000605814 RNF20Q5VTR2 975 aa5.94□□□□□ -1.46
HMGB1P50-201ENST00000605814 ZNF592Q92610 1267 aa5.94□□□□□ -1.46
HMGB1P50-201ENST00000605814 GMCL1Q96IK5 515 aa5.94□□□□□ -1.46
HMGB1P50-201ENST00000605814 MBIPQ9NS73 344 aa5.94□□□□□ -1.46
HMGB1P50-201ENST00000605814 NSFL1CQ9UNZ2 370 aaKnown RBP5.94□□□□□ -1.46
HMGB1P50-201ENST00000605814 ZNF330Q9Y3S2 320 aaPredicted RBP5.94□□□□□ -1.46
HMGB1P50-201ENST00000605814 ZBBXA8MT70 800 aa5.93□□□□□ -1.46
HMGB1P50-201ENST00000605814 ESPNB1AK53 854 aa5.93□□□□□ -1.46
HMGB1P50-201ENST00000605814 GPR25O00155 361 aa5.93□□□□□ -1.46
HMGB1P50-201ENST00000605814 ARHGEF15O94989 841 aa5.93□□□□□ -1.46
HMGB1P50-201ENST00000605814 RNF144AP50876 292 aaPredicted RBP5.93□□□□□ -1.46
HMGB1P50-201ENST00000605814 FBXO31Q5XUX0 539 aaPredicted RBP5.93□□□□□ -1.46
HMGB1P50-201ENST00000605814 LYPD4Q6UWN0 246 aa5.93□□□□□ -1.46
HMGB1P50-201ENST00000605814 CCER1Q8TC90 406 aaPredicted RBP5.93□□□□□ -1.46
HMGB1P50-201ENST00000605814 CELA2BP08218 269 aaPredicted RBP5.92□□□□□ -1.46
HMGB1P50-201ENST00000605814 GTF2E1P29083 439 aaPredicted RBP5.92□□□□□ -1.46
HMGB1P50-201ENST00000605814 GPC1P35052 558 aa5.92□□□□□ -1.46
HMGB1P50-201ENST00000605814 TMEM259Q4ZIN3 620 aa5.92□□□□□ -1.46
HMGB1P50-201ENST00000605814 CC2D2BQ6DHV5 1058 aa5.92□□□□□ -1.46
HMGB1P50-201ENST00000605814 CYP2U1Q7Z449 544 aa5.92□□□□□ -1.46
HMGB1P50-201ENST00000605814 CCDC125Q86Z20 511 aa5.92□□□□□ -1.46
HMGB1P50-201ENST00000605814 TRIM22Q8IYM9 498 aa5.92□□□□□ -1.46
HMGB1P50-201ENST00000605814 ZNF837Q96EG3 531 aaPredicted RBP5.92□□□□□ -1.46
HMGB1P50-201ENST00000605814 LOC100996750A0A140TA64 210 aa5.91□□□□□ -1.46
HMGB1P50-201ENST00000605814 GIGYF1O75420 1035 aaPredicted RBP5.91□□□□□ -1.46
HMGB1P50-201ENST00000605814 GTPBP3Q969Y2 492 aaKnown RBP5.91□□□□□ -1.46
HMGB1P50-201ENST00000605814 KRTAP4-6Q9BYQ5 205 aa5.91□□□□□ -1.46
HMGB1P50-201ENST00000605814 CUEDC1Q9NWM3 386 aaPredicted RBP5.91□□□□□ -1.46
HMGB1P50-201ENST00000605814 IGF1RP08069 1367 aa5.91□□□□□ -1.46
HMGB1P50-201ENST00000605814 A0A1W2PRU2 124 aa5.9□□□□□ -1.46
HMGB1P50-201ENST00000605814 MX2P20592 715 aa5.9□□□□□ -1.46
HMGB1P50-201ENST00000605814 POU4F2Q12837 409 aa5.9□□□□□ -1.46
HMGB1P50-201ENST00000605814 GAS6Q14393 721 aa5.9□□□□□ -1.46
HMGB1P50-201ENST00000605814 BEND7Q8N7W2 519 aaPredicted RBP5.9□□□□□ -1.46
HMGB1P50-201ENST00000605814 GALNT6Q8NCL4 622 aa5.9□□□□□ -1.46
HMGB1P50-201ENST00000605814 DYRK1BQ9Y463 629 aa5.9□□□□□ -1.46
HMGB1P50-201ENST00000605814 PCDHB11Q9Y5F2 797 aa5.9□□□□□ -1.46
HMGB1P50-201ENST00000605814 FBXO45P0C2W1 286 aa5.89□□□□□ -1.47
HMGB1P50-201ENST00000605814 BCRP11274 1271 aa5.89□□□□□ -1.47
HMGB1P50-201ENST00000605814 MCCD1P59942 119 aaPredicted RBP5.89□□□□□ -1.47
HMGB1P50-201ENST00000605814 KDF1Q8NAX2 398 aaPredicted RBP5.89□□□□□ -1.47
HMGB1P50-201ENST00000605814 TIMMDC1Q9NPL8 285 aa5.89□□□□□ -1.47
HMGB1P50-201ENST00000605814 SUPT16HQ9Y5B9 1047 aaKnown RBP5.89□□□□□ -1.47
HMGB1P50-201ENST00000605814 APBB1O00213 710 aa5.88□□□□□ -1.47
HMGB1P50-201ENST00000605814 MSTNO14793 375 aa5.88□□□□□ -1.47
HMGB1P50-201ENST00000605814 MYCP01106 439 aaPredicted RBP5.88□□□□□ -1.47
HMGB1P50-201ENST00000605814 TAS1R3Q7RTX0 852 aa5.88□□□□□ -1.47
HMGB1P50-201ENST00000605814 TRIM34Q9BYJ4 488 aa5.88□□□□□ -1.47
HMGB1P50-201ENST00000605814 NUCKS1Q9H1E3 243 aaKnown RBP5.88□□□□□ -1.47
HMGB1P50-201ENST00000605814 ARHGEF10LQ9HCE6 1279 aa5.88□□□□□ -1.47
HMGB1P50-201ENST00000605814 WASLO00401 505 aaPredicted RBP5.87□□□□□ -1.47
HMGB1P50-201ENST00000605814 ERVK-9P63128 1117 aa5.87□□□□□ -1.47
HMGB1P50-201ENST00000605814 CLN3Q13286 438 aa5.87□□□□□ -1.47
HMGB1P50-201ENST00000605814 DBN1Q16643 649 aa5.87□□□□□ -1.47
HMGB1P50-201ENST00000605814 NBPF10Q6P3W6 841 aaKnown RBP5.87□□□□□ -1.47
HMGB1P50-201ENST00000605814 NBPF15Q8N660 670 aa5.87□□□□□ -1.47
HMGB1P50-201ENST00000605814 BCANQ96GW7 911 aa5.87□□□□□ -1.47
HMGB1P50-201ENST00000605814 PHF24Q9UPV7 400 aa5.87□□□□□ -1.47
HMGB1P50-201ENST00000605814 CNTNAP5Q8WYK1 1306 aa5.87□□□□□ -1.47
HMGB1P50-201ENST00000605814 WRNQ14191 1432 aaPredicted RBP eCLIP5.87□□□□□ -1.47
HMGB1P50-201ENST00000605814 CSB-PGBD3P0DP91 1061 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms