RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 TRIM35Q9UPQ4 493 aa21.24■□□□□ 0.99
SS18-211ENST00000578954 SPATA31A1Q5TZJ5 1347 aa21.24■□□□□ 0.99
SS18-211ENST00000578954 TATP17735 454 aaPredicted RBP21.23■□□□□ 0.99
SS18-211ENST00000578954 RIPK4P57078 832 aa21.23■□□□□ 0.99
SS18-211ENST00000578954 PLEKHO1Q53GL0 409 aaPredicted RBP21.23■□□□□ 0.99
SS18-211ENST00000578954 MEX3CQ5U5Q3 659 aaKnown RBP21.23■□□□□ 0.99
SS18-211ENST00000578954 WWC1Q8IX03 1113 aa21.23■□□□□ 0.99
SS18-211ENST00000578954 THRAP3Q9Y2W1 955 aaKnown RBP21.23■□□□□ 0.99
SS18-211ENST00000578954 SPATA31A5Q5VU36 1347 aa21.23■□□□□ 0.99
SS18-211ENST00000578954 SPATA31A7Q8IWB4 1347 aa21.23■□□□□ 0.99
SS18-211ENST00000578954 SENP3-EIF4A1A0A087X0R7 540 aa21.22■□□□□ 0.99
SS18-211ENST00000578954 PDE3BQ13370 1112 aa21.22■□□□□ 0.99
SS18-211ENST00000578954 VPS72Q15906 364 aa21.22■□□□□ 0.99
SS18-211ENST00000578954 IL2RBP14784 551 aa21.21■□□□□ 0.99
SS18-211ENST00000578954 LMOD3Q0VAK6 560 aa21.21■□□□□ 0.99
SS18-211ENST00000578954 SALL2Q9Y467 1007 aaPredicted RBP21.21■□□□□ 0.99
SS18-211ENST00000578954 HTATSF1O43719 755 aaKnown RBP21.2■□□□□ 0.98
SS18-211ENST00000578954 NEUROD2Q15784 382 aa21.2■□□□□ 0.98
SS18-211ENST00000578954 USP21Q9UK80 565 aa21.2■□□□□ 0.98
SS18-211ENST00000578954 AFF2P51816 1311 aa21.2■□□□□ 0.98
SS18-211ENST00000578954 WDR63Q8IWG1 891 aa21.19■□□□□ 0.98
SS18-211ENST00000578954 MAP3K5Q99683 1374 aa21.19■□□□□ 0.98
SS18-211ENST00000578954 ATRNO75882 1429 aa21.19■□□□□ 0.98
SS18-211ENST00000578954 BARGINQ6ZT62 677 aa21.18■□□□□ 0.98
SS18-211ENST00000578954 CDCA7Q9BWT1 371 aaPredicted RBP21.18■□□□□ 0.98
SS18-211ENST00000578954 ADAMTS7Q9UKP4 1686 aa21.18■□□□□ 0.98
SS18-211ENST00000578954 SPG7Q9UQ90 795 aa21.17■□□□□ 0.98
SS18-211ENST00000578954 LRRC37A3O60309 1634 aa21.17■□□□□ 0.98
SS18-211ENST00000578954 SHANK3Q9BYB0 1731 aa21.17■□□□□ 0.98
SS18-211ENST00000578954 IL16Q14005 1332 aa21.16■□□□□ 0.98
SS18-211ENST00000578954 AKAP4Q5JQC9 854 aa21.16■□□□□ 0.98
SS18-211ENST00000578954 ZNF530Q6P9A1 599 aaPredicted RBP21.16■□□□□ 0.98
SS18-211ENST00000578954 GNAT3A8MTJ3 354 aa21.15■□□□□ 0.98
SS18-211ENST00000578954 GOLGA2Q08379 1002 aa21.15■□□□□ 0.98
SS18-211ENST00000578954 USP35Q9P2H5 1018 aa21.15■□□□□ 0.98
SS18-211ENST00000578954 ZCRB1Q8TBF4 217 aaKnown RBP21.14■□□□□ 0.97
SS18-211ENST00000578954 TNS2Q63HR2 1409 aa21.13■□□□□ 0.97
SS18-211ENST00000578954 CEMIPQ8WUJ3 1361 aa21.13■□□□□ 0.97
SS18-211ENST00000578954 PCDH11XQ9BZA7 1347 aa21.13■□□□□ 0.97
SS18-211ENST00000578954 PCDH11YQ9BZA8 1340 aa21.13■□□□□ 0.97
SS18-211ENST00000578954 TRMT2AQ8IZ69 625 aaKnown RBP21.13■□□□□ 0.97
SS18-211ENST00000578954 GLI3P10071 1580 aa21.13■□□□□ 0.97
SS18-211ENST00000578954 CENPBP07199 599 aaPredicted RBP21.12■□□□□ 0.97
SS18-211ENST00000578954 PHKG2P15735 406 aa21.12■□□□□ 0.97
SS18-211ENST00000578954 CALD1Q05682 793 aaKnown RBP21.12■□□□□ 0.97
SS18-211ENST00000578954 SLFN5Q08AF3 891 aa21.12■□□□□ 0.97
SS18-211ENST00000578954 C1orf141Q5JVX7 400 aa21.12■□□□□ 0.97
SS18-211ENST00000578954 TRPC5Q9UL62 973 aaPredicted RBP21.12■□□□□ 0.97
SS18-211ENST00000578954 THSD7AQ9UPZ6 1657 aa21.12■□□□□ 0.97
SS18-211ENST00000578954 E9PSI1 815 aa21.11■□□□□ 0.97
SS18-211ENST00000578954 CYP27B1O15528 508 aa21.11■□□□□ 0.97
SS18-211ENST00000578954 IFNL2Q8IZJ0 200 aa21.11■□□□□ 0.97
SS18-211ENST00000578954 RTF1Q92541 710 aaKnown RBP21.11■□□□□ 0.97
SS18-211ENST00000578954 CDCA7LQ96GN5 454 aa21.11■□□□□ 0.97
SS18-211ENST00000578954 IL17REQ8NFR9 667 aa21.1■□□□□ 0.97
SS18-211ENST00000578954 SPINK5Q9NQ38 1064 aaPredicted RBP21.1■□□□□ 0.97
SS18-211ENST00000578954 CCDC9Q9Y3X0 531 aaKnown RBP21.1■□□□□ 0.97
SS18-211ENST00000578954 DCTN1Q14203 1278 aa21.09■□□□□ 0.97
SS18-211ENST00000578954 MCM10Q7L590 875 aa21.09■□□□□ 0.97
SS18-211ENST00000578954 GJD4Q96KN9 370 aaPredicted RBP21.09■□□□□ 0.97
SS18-211ENST00000578954 THUMPD2Q9BTF0 503 aaKnown RBP21.09■□□□□ 0.97
SS18-211ENST00000578954 KDM6AO15550 1401 aaPredicted RBP21.09■□□□□ 0.97
SS18-211ENST00000578954 SCN11AQ9UI33 1791 aa21.08■□□□□ 0.97
SS18-211ENST00000578954 HSP90AB1P08238 724 aaKnown RBP21.08■□□□□ 0.97
SS18-211ENST00000578954 ZNF853P0CG23 659 aa21.08■□□□□ 0.97
SS18-211ENST00000578954 NKX1-1Q15270 411 aaPredicted RBP21.08■□□□□ 0.97
SS18-211ENST00000578954 DUSP27Q5VZP5 1158 aa21.08■□□□□ 0.97
SS18-211ENST00000578954 IFT57Q9NWB7 429 aa21.08■□□□□ 0.97
SS18-211ENST00000578954 VIRMAQ69YN4 1812 aaKnown RBP21.08■□□□□ 0.96
SS18-211ENST00000578954 MRC1P22897 1456 aa21.07■□□□□ 0.96
SS18-211ENST00000578954 RNMTO43148 476 aaKnown RBP21.07■□□□□ 0.96
SS18-211ENST00000578954 ONECUT3O60422 494 aaPredicted RBP21.06■□□□□ 0.96
SS18-211ENST00000578954 ZNF772Q68DY9 489 aaPredicted RBP21.06■□□□□ 0.96
SS18-211ENST00000578954 EXOC5O00471 708 aa21.05■□□□□ 0.96
SS18-211ENST00000578954 GNAI1P63096 354 aa21.05■□□□□ 0.96
SS18-211ENST00000578954 DCAF5Q96JK2 942 aa21.05■□□□□ 0.96
SS18-211ENST00000578954 CFAP44Q96MT7 982 aa21.05■□□□□ 0.96
SS18-211ENST00000578954 MYH16Q9H6N6 1097 aa21.05■□□□□ 0.96
SS18-211ENST00000578954 DDB1Q16531 1140 aa21.04■□□□□ 0.96
SS18-211ENST00000578954 FAM98CQ17RN3 349 aaKnown RBP21.04■□□□□ 0.96
SS18-211ENST00000578954 MPRIPQ6WCQ1 1025 aa21.04■□□□□ 0.96
SS18-211ENST00000578954 QTRT2Q9H974 415 aaKnown RBP21.04■□□□□ 0.96
SS18-211ENST00000578954 LGR6Q9HBX8 967 aa21.04■□□□□ 0.96
SS18-211ENST00000578954 BABAM1Q9NWV8 329 aa21.04■□□□□ 0.96
SS18-211ENST00000578954 SIPA1L3O60292 1781 aaPredicted RBP21.04■□□□□ 0.96
SS18-211ENST00000578954 CHL1O00533 1208 aa21.03■□□□□ 0.96
SS18-211ENST00000578954 FANCIQ9NVI1 1328 aa21.03■□□□□ 0.96
SS18-211ENST00000578954 DDX54Q8TDD1 881 aaKnown RBP21■□□□□ 0.95
SS18-211ENST00000578954 TOGARAM1Q9Y4F4 1720 aa21■□□□□ 0.95
SS18-211ENST00000578954 TAF7Q15545 349 aaPredicted RBP20.99■□□□□ 0.95
SS18-211ENST00000578954 MBIPQ9NS73 344 aa20.99■□□□□ 0.95
SS18-211ENST00000578954 KDM3BQ7LBC6 1761 aa20.99■□□□□ 0.95
SS18-211ENST00000578954 ERVV-2B6SEH9 535 aa20.98■□□□□ 0.95
SS18-211ENST00000578954 TEFQ10587 303 aa20.98■□□□□ 0.95
SS18-211ENST00000578954 SLC52A2Q9HAB3 445 aa20.98■□□□□ 0.95
SS18-211ENST00000578954 RBM6P78332 1123 aaKnown RBP20.97■□□□□ 0.95
SS18-211ENST00000578954 MARCH10Q8NA82 808 aaPredicted RBP20.97■□□□□ 0.95
SS18-211ENST00000578954 TSR2Q969E8 191 aaKnown RBP20.97■□□□□ 0.95
SS18-211ENST00000578954 BCL9O00512 1426 aa20.96■□□□□ 0.95
SS18-211ENST00000578954 RGS17Q9UGC6 210 aaPredicted RBP20.96■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms