RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 ANKRD20A12PQ8NF67 263 aa3.54□□□□□ -1.84
SMCHD1-203ENST00000577880 ZCRB1Q8TBF4 217 aaKnown RBP3.54□□□□□ -1.84
SMCHD1-203ENST00000577880 EYA3Q99504 573 aa3.54□□□□□ -1.84
SMCHD1-203ENST00000577880 CCDC87Q9NVE4 849 aa3.54□□□□□ -1.84
SMCHD1-203ENST00000577880 ABCF2Q9UG63 623 aa3.54□□□□□ -1.84
SMCHD1-203ENST00000577880 RCAN3Q9UKA8 241 aa3.54□□□□□ -1.84
SMCHD1-203ENST00000577880 NCOA1Q15788 1441 aa3.54□□□□□ -1.84
SMCHD1-203ENST00000577880 NCOA2Q15596 1464 aa3.54□□□□□ -1.84
SMCHD1-203ENST00000577880 DNMBPQ6XZF7 1577 aa3.54□□□□□ -1.84
SMCHD1-203ENST00000577880 B4DLN1 442 aa3.53□□□□□ -1.84
SMCHD1-203ENST00000577880 PRKAR2BP31323 418 aa3.53□□□□□ -1.84
SMCHD1-203ENST00000577880 ZNF76P36508 570 aa3.53□□□□□ -1.84
SMCHD1-203ENST00000577880 USP5P45974 858 aa3.53□□□□□ -1.84
SMCHD1-203ENST00000577880 MRPL12P52815 198 aaKnown RBP3.53□□□□□ -1.84
SMCHD1-203ENST00000577880 MCTP1Q6DN14 999 aa3.53□□□□□ -1.84
SMCHD1-203ENST00000577880 PPP4R3AQ6IN85 833 aa3.53□□□□□ -1.84
SMCHD1-203ENST00000577880 WAPLQ7Z5K2 1190 aa3.53□□□□□ -1.84
SMCHD1-203ENST00000577880 SLC51AQ86UW1 340 aa3.53□□□□□ -1.84
SMCHD1-203ENST00000577880 FMNL2Q96PY5 1086 aa3.53□□□□□ -1.84
SMCHD1-203ENST00000577880 SUPT16HQ9Y5B9 1047 aaKnown RBP3.53□□□□□ -1.84
SMCHD1-203ENST00000577880 GJA3Q9Y6H8 435 aa3.53□□□□□ -1.84
SMCHD1-203ENST00000577880 ST18O60284 1047 aa3.53□□□□□ -1.84
SMCHD1-203ENST00000577880 CA8P35219 290 aa3.53□□□□□ -1.84
SMCHD1-203ENST00000577880 PDE6BP35913 854 aa3.53□□□□□ -1.84
SMCHD1-203ENST00000577880 TRAPPC3LQ5T215 181 aa3.53□□□□□ -1.84
SMCHD1-203ENST00000577880 RBM26Q5T8P6 1007 aaKnown RBP3.53□□□□□ -1.84
SMCHD1-203ENST00000577880 ANKRD45Q5TZF3 282 aa3.53□□□□□ -1.84
SMCHD1-203ENST00000577880 TPTE2Q6XPS3 522 aa3.53□□□□□ -1.84
SMCHD1-203ENST00000577880 CDK5RAP3Q96JB5 506 aa3.53□□□□□ -1.84
SMCHD1-203ENST00000577880 NLRP3Q96P20 1036 aa3.53□□□□□ -1.84
SMCHD1-203ENST00000577880 WDR70Q9NW82 654 aa3.53□□□□□ -1.84
SMCHD1-203ENST00000577880 C9orf84Q5VXU9 1444 aa3.53□□□□□ -1.84
SMCHD1-203ENST00000577880 ERBINQ96RT1 1412 aa3.53□□□□□ -1.84
SMCHD1-203ENST00000577880 TPM1P09493 284 aa3.53□□□□□ -1.84
SMCHD1-203ENST00000577880 MYBBP1AQ9BQG0 1328 aaKnown RBP3.53□□□□□ -1.84
SMCHD1-203ENST00000577880 ZC3H12CQ9C0D7 883 aaKnown RBP3.53□□□□□ -1.84
SMCHD1-203ENST00000577880 HOOK1Q9UJC3 728 aaKnown RBP3.53□□□□□ -1.84
SMCHD1-203ENST00000577880 KDM5BQ9UGL1 1544 aa3.53□□□□□ -1.84
SMCHD1-203ENST00000577880 APAF1O14727 1248 aa3.53□□□□□ -1.84
SMCHD1-203ENST00000577880 SURF6O75683 361 aaKnown RBP3.53□□□□□ -1.84
SMCHD1-203ENST00000577880 KRT18P05783 430 aaKnown RBP3.53□□□□□ -1.84
SMCHD1-203ENST00000577880 HLA-DOAP06340 250 aa3.53□□□□□ -1.84
SMCHD1-203ENST00000577880 TNNI2P48788 182 aa3.53□□□□□ -1.84
SMCHD1-203ENST00000577880 SYAP1Q96A49 352 aaPredicted RBP3.53□□□□□ -1.84
SMCHD1-203ENST00000577880 DRC1Q96MC2 740 aa3.53□□□□□ -1.84
SMCHD1-203ENST00000577880 FSD1Q9BTV5 496 aa3.53□□□□□ -1.84
SMCHD1-203ENST00000577880 SRCIN1Q9C0H9 1055 aa3.53□□□□□ -1.84
SMCHD1-203ENST00000577880 DDX19BQ9UMR2 479 aa3.53□□□□□ -1.84
SMCHD1-203ENST00000577880 XIRP1Q702N8 1843 aaKnown RBP3.53□□□□□ -1.85
SMCHD1-203ENST00000577880 CNTLNQ9NXG0 1405 aa3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 A0A0U1RQG5 324 aaPredicted RBP3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 GNAT3A8MTJ3 354 aa3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 WASLO00401 505 aaPredicted RBP3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 IL2RBP14784 551 aa3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 METTL24Q5JXM2 366 aa3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 PCMTD1Q96MG8 357 aaPredicted RBP3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 DNAJC2Q99543 621 aaKnown RBP3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 NYXQ9GZU5 481 aa3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 SLAIN2Q9P270 581 aa3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 KAT6BQ8WYB5 2073 aa3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 GRIN2AQ12879 1464 aa3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 USP47Q96K76 1375 aa3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 KCNA6P17658 529 aa3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 EAPPQ56P03 285 aaPredicted RBP3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 ARHGAP27Q6ZUM4 889 aa3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 TNS4Q8IZW8 715 aa3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 HOOK2Q96ED9 719 aa3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 BTG4Q9NY30 223 aa3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 CCNL1Q9UK58 526 aaPredicted RBP3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 BCS1LQ9Y276 419 aa3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 ASXL2Q76L83 1435 aa3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 OTUD7BQ6GQQ9 843 aa3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 LARP1Q6PKG0 1096 aaKnown RBP3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 CCDC85AQ96PX6 553 aaPredicted RBP3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 SLC12A5Q9H2X9 1139 aa3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 ANO2Q9NQ90 1003 aa3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 AKAP2Q9Y2D5 859 aa3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 ATP6V1DQ9Y5K8 247 aa3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 LRRFIP2Q9Y608 721 aaKnown RBP3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 SPHKAPQ2M3C7 1700 aa3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 NUP160Q12769 1436 aa3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 ANKRD18BA2A2Z9 1011 aa3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 H0YIN7 160 aa3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 FCHSD2O94868 740 aa3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 IPO7O95373 1038 aaKnown RBP3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 RGS19P49795 217 aa3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 IFIT5Q13325 482 aaKnown RBP3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 FAM98CQ17RN3 349 aaKnown RBP3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 ZFYVE27Q5T4F4 411 aa3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 SPTY2D1Q68D10 685 aaPredicted RBP3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 MIER1Q8N108 512 aa3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 ANKRD24Q8TF21 1146 aa3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 EHMT1Q9H9B1 1298 aa3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 RBM27Q9P2N5 1060 aaKnown RBP3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 DAPK1P53355 1430 aa3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 CASKIN1Q8WXD9 1431 aa3.52□□□□□ -1.85
SMCHD1-203ENST00000577880 CCER2I3L3R5 266 aa3.51□□□□□ -1.85
SMCHD1-203ENST00000577880 HIP1O00291 1037 aa3.51□□□□□ -1.85
SMCHD1-203ENST00000577880 REC8O95072 547 aa3.51□□□□□ -1.85
SMCHD1-203ENST00000577880 BAG3O95817 575 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 90 ms