RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 HMOX1P09601 288 aa12.48□□□□□ -0.41
VPS35-211ENST00000569950 SULT6B1Q6IMI4 303 aa12.48□□□□□ -0.41
VPS35-211ENST00000569950 CFAP53Q96M91 514 aa12.48□□□□□ -0.41
VPS35-211ENST00000569950 PLEKHF1Q96S99 279 aa12.48□□□□□ -0.41
VPS35-211ENST00000569950 CCER2I3L3R5 266 aa12.47□□□□□ -0.41
VPS35-211ENST00000569950 IL2RBP14784 551 aa12.46□□□□□ -0.41
VPS35-211ENST00000569950 RXRBP28702 533 aa12.46□□□□□ -0.41
VPS35-211ENST00000569950 SEPT12Q8IYM1 358 aa12.46□□□□□ -0.41
VPS35-211ENST00000569950 PHACTR3Q96KR7 559 aa12.46□□□□□ -0.41
VPS35-211ENST00000569950 MRS2Q9HD23 443 aa12.46□□□□□ -0.41
VPS35-211ENST00000569950 ADAMTS8Q9UP79 889 aa12.46□□□□□ -0.41
VPS35-211ENST00000569950 CCDC9Q9Y3X0 531 aaKnown RBP12.46□□□□□ -0.41
VPS35-211ENST00000569950 SCN11AQ9UI33 1791 aa12.46□□□□□ -0.42
VPS35-211ENST00000569950 U2SURPO15042 1029 aaKnown RBP12.45□□□□□ -0.42
VPS35-211ENST00000569950 ITGB4P16144 1822 aa12.44□□□□□ -0.42
VPS35-211ENST00000569950 SIPA1L3O60292 1781 aaPredicted RBP12.44□□□□□ -0.42
VPS35-211ENST00000569950 CYP27B1O15528 508 aa12.44□□□□□ -0.42
VPS35-211ENST00000569950 FCHSD2O94868 740 aa12.44□□□□□ -0.42
VPS35-211ENST00000569950 U2AF1L5P0DN76 240 aaPredicted RBP12.44□□□□□ -0.42
VPS35-211ENST00000569950 PRKAR2BP31323 418 aa12.44□□□□□ -0.42
VPS35-211ENST00000569950 U2AF1Q01081 240 aaKnown RBP eCLIP12.44□□□□□ -0.42
VPS35-211ENST00000569950 MARCH10Q8NA82 808 aaPredicted RBP12.44□□□□□ -0.42
VPS35-211ENST00000569950 DOT1LQ8TEK3 1739 aa12.44□□□□□ -0.42
VPS35-211ENST00000569950 ILDR2Q71H61 639 aa12.43□□□□□ -0.42
VPS35-211ENST00000569950 CDCA7Q9BWT1 371 aaPredicted RBP12.43□□□□□ -0.42
VPS35-211ENST00000569950 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.43□□□□□ -0.422e-7■■□□□ 11.4
VPS35-211ENST00000569950 KDM6AO15550 1401 aaPredicted RBP12.43□□□□□ -0.42
VPS35-211ENST00000569950 MTHFSDQ2M296 383 aaKnown RBP12.42□□□□□ -0.42
VPS35-211ENST00000569950 NUDCQ9Y266 331 aa12.42□□□□□ -0.42
VPS35-211ENST00000569950 BCL9O00512 1426 aa12.42□□□□□ -0.42
VPS35-211ENST00000569950 TNS1Q9HBL0 1735 aaKnown RBP12.42□□□□□ -0.42
VPS35-211ENST00000569950 NHSQ6T4R5 1651 aa12.42□□□□□ -0.42
VPS35-211ENST00000569950 TATP17735 454 aaPredicted RBP12.41□□□□□ -0.42
VPS35-211ENST00000569950 ZCRB1Q8TBF4 217 aaKnown RBP12.41□□□□□ -0.42
VPS35-211ENST00000569950 RAPGEF4Q8WZA2 1011 aa12.41□□□□□ -0.42
VPS35-211ENST00000569950 DDB1Q16531 1140 aa12.4□□□□□ -0.42
VPS35-211ENST00000569950 FAM182BQ5T319 152 aa12.4□□□□□ -0.42
VPS35-211ENST00000569950 MRC1P22897 1456 aa12.4□□□□□ -0.43
VPS35-211ENST00000569950 PHKG2P15735 406 aa12.39□□□□□ -0.43
VPS35-211ENST00000569950 NKX1-1Q15270 411 aaPredicted RBP12.39□□□□□ -0.43
VPS35-211ENST00000569950 CCDC146Q8IYE0 955 aa12.39□□□□□ -0.43
VPS35-211ENST00000569950 PAPPAQ13219 1627 aa12.38□□□□□ -0.43
VPS35-211ENST00000569950 EXOC5O00471 708 aa12.38□□□□□ -0.43
VPS35-211ENST00000569950 PTF1AQ7RTS3 328 aa12.38□□□□□ -0.43
VPS35-211ENST00000569950 BTAF1O14981 1849 aa12.38□□□□□ -0.43
VPS35-211ENST00000569950 KAT6BQ8WYB5 2073 aa12.38□□□□□ -0.43
VPS35-211ENST00000569950 PCDH11XQ9BZA7 1347 aa12.37□□□□□ -0.43
VPS35-211ENST00000569950 PCDH11YQ9BZA8 1340 aa12.37□□□□□ -0.43
VPS35-211ENST00000569950 WDR43Q15061 677 aaKnown RBP eCLIP12.37□□□□□ -0.43
VPS35-211ENST00000569950 AMOTQ4VCS5 1084 aa12.37□□□□□ -0.43
VPS35-211ENST00000569950 KRT27Q7Z3Y8 459 aa12.37□□□□□ -0.43
VPS35-211ENST00000569950 CEMIPQ8WUJ3 1361 aa12.36□□□□□ -0.43
VPS35-211ENST00000569950 PLEKHO1Q53GL0 409 aaPredicted RBP12.36□□□□□ -0.43
VPS35-211ENST00000569950 ZNF530Q6P9A1 599 aaPredicted RBP12.36□□□□□ -0.43
VPS35-211ENST00000569950 RUNDC1Q96C34 613 aa12.36□□□□□ -0.43
VPS35-211ENST00000569950 SPG7Q9UQ90 795 aa12.36□□□□□ -0.43
VPS35-211ENST00000569950 MAP3K5Q99683 1374 aa12.35□□□□□ -0.43
VPS35-211ENST00000569950 TMPOP42166 694 aaKnown RBP12.35□□□□□ -0.43
VPS35-211ENST00000569950 NFE2L2Q16236 605 aa12.35□□□□□ -0.43
VPS35-211ENST00000569950 FAM9BQ8IZU0 186 aa12.35□□□□□ -0.43
VPS35-211ENST00000569950 IL17REQ8NFR9 667 aa12.35□□□□□ -0.43
VPS35-211ENST00000569950 DDX54Q8TDD1 881 aaKnown RBP12.35□□□□□ -0.43
VPS35-211ENST00000569950 LGR6Q9HBX8 967 aa12.35□□□□□ -0.43
VPS35-211ENST00000569950 TRIM35Q9UPQ4 493 aa12.35□□□□□ -0.43
VPS35-211ENST00000569950 UBR2Q8IWV8 1755 aa12.35□□□□□ -0.43
VPS35-211ENST00000569950 KDM3BQ7LBC6 1761 aa12.34□□□□□ -0.43
VPS35-211ENST00000569950 A0A0G2JS52 829 aa12.34□□□□□ -0.43
VPS35-211ENST00000569950 APAF1O14727 1248 aa12.34□□□□□ -0.43
VPS35-211ENST00000569950 MYT1Q01538 1121 aa12.34□□□□□ -0.43
VPS35-211ENST00000569950 AKAP4Q5JQC9 854 aa12.34□□□□□ -0.43
VPS35-211ENST00000569950 IFNL2Q8IZJ0 200 aa12.34□□□□□ -0.43
VPS35-211ENST00000569950 LY75O60449 1722 aa12.34□□□□□ -0.43
VPS35-211ENST00000569950 SENP3-EIF4A1A0A087X0R7 540 aa12.33□□□□□ -0.44
VPS35-211ENST00000569950 KCNQ2O43526 872 aa12.33□□□□□ -0.44
VPS35-211ENST00000569950 PDE3BQ13370 1112 aa12.33□□□□□ -0.44
VPS35-211ENST00000569950 MPRIPQ6WCQ1 1025 aa12.33□□□□□ -0.44
VPS35-211ENST00000569950 GAS2L2Q8NHY3 880 aa12.33□□□□□ -0.44
VPS35-211ENST00000569950 RRP7AQ9Y3A4 280 aaKnown RBP12.33□□□□□ -0.44
VPS35-211ENST00000569950 RGPD3A6NKT7 1758 aaPredicted RBP12.33□□□□□ -0.44
VPS35-211ENST00000569950 RGPD4Q7Z3J3 1758 aa12.33□□□□□ -0.44
VPS35-211ENST00000569950 RNMTO43148 476 aaKnown RBP12.32□□□□□ -0.44
VPS35-211ENST00000569950 ZNF521Q96K83 1311 aa12.32□□□□□ -0.44
VPS35-211ENST00000569950 CICQ96RK0 1608 aaPredicted RBP12.31□□□□□ -0.44
VPS35-211ENST00000569950 GNAT3A8MTJ3 354 aa12.31□□□□□ -0.44
VPS35-211ENST00000569950 DCTN1Q14203 1278 aa12.31□□□□□ -0.44
VPS35-211ENST00000569950 DCAF5Q96JK2 942 aa12.31□□□□□ -0.44
VPS35-211ENST00000569950 RREB1Q92766 1687 aa12.3□□□□□ -0.44
VPS35-211ENST00000569950 FAM196AQ6ZSG2 479 aa12.3□□□□□ -0.44
VPS35-211ENST00000569950 MCM10Q7L590 875 aa12.3□□□□□ -0.44
VPS35-211ENST00000569950 THUMPD2Q9BTF0 503 aaKnown RBP12.3□□□□□ -0.44
VPS35-211ENST00000569950 KCPQ6ZWJ8 1503 aa12.3□□□□□ -0.44
VPS35-211ENST00000569950 MAPK8IP3Q9UPT6 1336 aa12.3□□□□□ -0.44
VPS35-211ENST00000569950 ZNF831Q5JPB2 1677 aa12.29□□□□□ -0.44
VPS35-211ENST00000569950 HTATSF1O43719 755 aaKnown RBP12.29□□□□□ -0.44
VPS35-211ENST00000569950 PRIM1P49642 420 aaKnown RBP12.29□□□□□ -0.44
VPS35-211ENST00000569950 RIPK4P57078 832 aa12.29□□□□□ -0.44
VPS35-211ENST00000569950 NCBP3Q53F19 620 aaKnown RBP12.29□□□□□ -0.44
VPS35-211ENST00000569950 ACSBG1Q96GR2 724 aa12.29□□□□□ -0.44
VPS35-211ENST00000569950 PNNQ9H307 717 aaKnown RBP12.29□□□□□ -0.44
VPS35-211ENST00000569950 TAF1LQ8IZX4 1826 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms