RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 RRP7AQ9Y3A4 280 aaKnown RBP16.81■□□□□ 0.28
CLK3-214ENST00000564096 MEGF6O75095 1541 aa16.8■□□□□ 0.28
CLK3-214ENST00000564096 OVOS2A0A0G2JMS6 1433 aa16.8■□□□□ 0.28
CLK3-214ENST00000564096 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.8■□□□□ 0.28
CLK3-214ENST00000564096 MAP3K5Q99683 1374 aa16.79■□□□□ 0.28
CLK3-214ENST00000564096 SENP3-EIF4A1A0A087X0R7 540 aa16.79■□□□□ 0.28
CLK3-214ENST00000564096 UNC5CLQ8IV45 518 aa16.79■□□□□ 0.28
CLK3-214ENST00000564096 ZNF521Q96K83 1311 aa16.78■□□□□ 0.28
CLK3-214ENST00000564096 IL2RBP14784 551 aa16.78■□□□□ 0.28
CLK3-214ENST00000564096 RTF1Q92541 710 aaKnown RBP16.78■□□□□ 0.28
CLK3-214ENST00000564096 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.78■□□□□ 0.28
CLK3-214ENST00000564096 SPG7Q9UQ90 795 aa16.78■□□□□ 0.28
CLK3-214ENST00000564096 PKD1L3Q7Z443 1732 aa16.77■□□□□ 0.28
CLK3-214ENST00000564096 GOLGA2Q08379 1002 aa16.77■□□□□ 0.28
CLK3-214ENST00000564096 MTHFSDQ2M296 383 aaKnown RBP16.77■□□□□ 0.28
CLK3-214ENST00000564096 C1orf141Q5JVX7 400 aa16.77■□□□□ 0.28
CLK3-214ENST00000564096 WWC1Q8IX03 1113 aa16.77■□□□□ 0.28
CLK3-214ENST00000564096 FNBP4Q8N3X1 1017 aaPredicted RBP16.77■□□□□ 0.28
CLK3-214ENST00000564096 CDCA7Q9BWT1 371 aaPredicted RBP16.77■□□□□ 0.28
CLK3-214ENST00000564096 THRAP3Q9Y2W1 955 aaKnown RBP16.77■□□□□ 0.28
CLK3-214ENST00000564096 BCL9LQ86UU0 1499 aa16.76■□□□□ 0.27
CLK3-214ENST00000564096 ZNF530Q6P9A1 599 aaPredicted RBP16.76■□□□□ 0.27
CLK3-214ENST00000564096 WDR63Q8IWG1 891 aa16.76■□□□□ 0.27
CLK3-214ENST00000564096 USP35Q9P2H5 1018 aa16.76■□□□□ 0.27
CLK3-214ENST00000564096 USP21Q9UK80 565 aa16.76■□□□□ 0.27
CLK3-214ENST00000564096 CCDC9Q9Y3X0 531 aaKnown RBP16.76■□□□□ 0.27
CLK3-214ENST00000564096 SPATA31A1Q5TZJ5 1347 aa16.75■□□□□ 0.27
CLK3-214ENST00000564096 PCDH11XQ9BZA7 1347 aa16.75■□□□□ 0.27
CLK3-214ENST00000564096 PCDH11YQ9BZA8 1340 aa16.75■□□□□ 0.27
CLK3-214ENST00000564096 HTATSF1O43719 755 aaKnown RBP16.75■□□□□ 0.27
CLK3-214ENST00000564096 VPS72Q15906 364 aa16.75■□□□□ 0.27
CLK3-214ENST00000564096 WNK3Q9BYP7 1800 aa16.75■□□□□ 0.27
CLK3-214ENST00000564096 AFF2P51816 1311 aa16.74■□□□□ 0.27
CLK3-214ENST00000564096 IL16Q14005 1332 aa16.74■□□□□ 0.27
CLK3-214ENST00000564096 SPATA31A5Q5VU36 1347 aa16.74■□□□□ 0.27
CLK3-214ENST00000564096 SPATA31A7Q8IWB4 1347 aa16.74■□□□□ 0.27
CLK3-214ENST00000564096 DISP2A7MBM2 1401 aa16.74■□□□□ 0.27
CLK3-214ENST00000564096 GNAT3A8MTJ3 354 aa16.74■□□□□ 0.27
CLK3-214ENST00000564096 E9PSI1 815 aa16.74■□□□□ 0.27
CLK3-214ENST00000564096 AKAP4Q5JQC9 854 aa16.74■□□□□ 0.27
CLK3-214ENST00000564096 MYH16Q9H6N6 1097 aa16.73■□□□□ 0.27
CLK3-214ENST00000564096 TRIM35Q9UPQ4 493 aa16.73■□□□□ 0.27
CLK3-214ENST00000564096 TNS2Q63HR2 1409 aa16.72■□□□□ 0.27
CLK3-214ENST00000564096 LRRC37A3O60309 1634 aa16.72■□□□□ 0.27
CLK3-214ENST00000564096 HSP90AB1P08238 724 aaKnown RBP16.72■□□□□ 0.27
CLK3-214ENST00000564096 BARGINQ6ZT62 677 aa16.71■□□□□ 0.27
CLK3-214ENST00000564096 IFNL2Q8IZJ0 200 aa16.7■□□□□ 0.26
CLK3-214ENST00000564096 ZCRB1Q8TBF4 217 aaKnown RBP16.7■□□□□ 0.26
CLK3-214ENST00000564096 TRPC5Q9UL62 973 aaPredicted RBP16.7■□□□□ 0.26
CLK3-214ENST00000564096 DLG5Q8TDM6 1919 aa16.7■□□□□ 0.26
CLK3-214ENST00000564096 ATRNO75882 1429 aa16.7■□□□□ 0.26
CLK3-214ENST00000564096 IFT57Q9NWB7 429 aa16.69■□□□□ 0.26
CLK3-214ENST00000564096 PHKG2P15735 406 aa16.68■□□□□ 0.26
CLK3-214ENST00000564096 GNAI1P63096 354 aa16.68■□□□□ 0.26
CLK3-214ENST00000564096 MCM10Q7L590 875 aa16.68■□□□□ 0.26
CLK3-214ENST00000564096 CEMIPQ8WUJ3 1361 aa16.67■□□□□ 0.26
CLK3-214ENST00000564096 SLFN5Q08AF3 891 aa16.67■□□□□ 0.26
CLK3-214ENST00000564096 ZNF772Q68DY9 489 aaPredicted RBP16.67■□□□□ 0.26
CLK3-214ENST00000564096 CDCA7LQ96GN5 454 aa16.66■□□□□ 0.26
CLK3-214ENST00000564096 DCAF5Q96JK2 942 aa16.66■□□□□ 0.26
CLK3-214ENST00000564096 THUMPD2Q9BTF0 503 aaKnown RBP16.66■□□□□ 0.26
CLK3-214ENST00000564096 ADAMTS7Q9UKP4 1686 aa16.65■□□□□ 0.26
CLK3-214ENST00000564096 EXOC5O00471 708 aa16.65■□□□□ 0.26
CLK3-214ENST00000564096 TEFQ10587 303 aa16.65■□□□□ 0.26
CLK3-214ENST00000564096 DCTN1Q14203 1278 aa16.65■□□□□ 0.26
CLK3-214ENST00000564096 DDB1Q16531 1140 aa16.65■□□□□ 0.26
CLK3-214ENST00000564096 CFAP44Q96MT7 982 aa16.65■□□□□ 0.26
CLK3-214ENST00000564096 MRC1P22897 1456 aa16.65■□□□□ 0.26
CLK3-214ENST00000564096 FANCIQ9NVI1 1328 aa16.65■□□□□ 0.26
CLK3-214ENST00000564096 SHANK3Q9BYB0 1731 aa16.65■□□□□ 0.26
CLK3-214ENST00000564096 KDM6AO15550 1401 aaPredicted RBP16.64■□□□□ 0.25
CLK3-214ENST00000564096 A0A0G2JS52 829 aa16.64■□□□□ 0.25
CLK3-214ENST00000564096 MYT1Q01538 1121 aa16.64■□□□□ 0.25
CLK3-214ENST00000564096 DUSP27Q5VZP5 1158 aa16.64■□□□□ 0.25
CLK3-214ENST00000564096 BABAM1Q9NWV8 329 aa16.64■□□□□ 0.25
CLK3-214ENST00000564096 LAS1LQ9Y4W2 734 aaKnown RBP16.64■□□□□ 0.25
CLK3-214ENST00000564096 THSD7AQ9UPZ6 1657 aa16.64■□□□□ 0.25
CLK3-214ENST00000564096 GLI3P10071 1580 aa16.64■□□□□ 0.25
CLK3-214ENST00000564096 CYP27B1O15528 508 aa16.63■□□□□ 0.25
CLK3-214ENST00000564096 RNMTO43148 476 aaKnown RBP16.63■□□□□ 0.25
CLK3-214ENST00000564096 FAM98CQ17RN3 349 aaKnown RBP16.63■□□□□ 0.25
CLK3-214ENST00000564096 MPRIPQ6WCQ1 1025 aa16.63■□□□□ 0.25
CLK3-214ENST00000564096 GJD4Q96KN9 370 aaPredicted RBP16.63■□□□□ 0.25
CLK3-214ENST00000564096 TRMT2AQ8IZ69 625 aaKnown RBP16.62■□□□□ 0.25
CLK3-214ENST00000564096 DDX54Q8TDD1 881 aaKnown RBP16.62■□□□□ 0.25
CLK3-214ENST00000564096 CT47B1P0C2W7 299 aaPredicted RBP16.61■□□□□ 0.25
CLK3-214ENST00000564096 IL17REQ8NFR9 667 aa16.61■□□□□ 0.25
CLK3-214ENST00000564096 SPINK5Q9NQ38 1064 aaPredicted RBP16.61■□□□□ 0.25
CLK3-214ENST00000564096 TSPYL4Q9UJ04 414 aa16.61■□□□□ 0.25
CLK3-214ENST00000564096 SCN11AQ9UI33 1791 aa16.6■□□□□ 0.25
CLK3-214ENST00000564096 ZNF853P0CG23 659 aa16.6■□□□□ 0.25
CLK3-214ENST00000564096 NKX1-1Q15270 411 aaPredicted RBP16.6■□□□□ 0.25
CLK3-214ENST00000564096 TSR2Q969E8 191 aaKnown RBP16.6■□□□□ 0.25
CLK3-214ENST00000564096 QTRT2Q9H974 415 aaKnown RBP16.6■□□□□ 0.25
CLK3-214ENST00000564096 MBIPQ9NS73 344 aa16.6■□□□□ 0.25
CLK3-214ENST00000564096 CHL1O00533 1208 aa16.59■□□□□ 0.25
CLK3-214ENST00000564096 TAF7Q15545 349 aaPredicted RBP16.59■□□□□ 0.25
CLK3-214ENST00000564096 ERVV-2B6SEH9 535 aa16.58■□□□□ 0.24
CLK3-214ENST00000564096 PIAS4Q8N2W9 510 aaPredicted RBP16.58■□□□□ 0.24
CLK3-214ENST00000564096 SLC52A2Q9HAB3 445 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 154.4 ms