RNA–Protein interactions for RNA: ENST00000558072.5

TPM1-209, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-209ENST00000558072 QTRT2Q9H974 415 aaKnown RBP16.34■□□□□ 0.21
TPM1-209ENST00000558072 DISP2A7MBM2 1401 aa16.34■□□□□ 0.21
TPM1-209ENST00000558072 FAM98CQ17RN3 349 aaKnown RBP16.33■□□□□ 0.2
TPM1-209ENST00000558072 GAS2L2Q8NHY3 880 aa16.33■□□□□ 0.2
TPM1-209ENST00000558072 RAPGEF4Q8WZA2 1011 aa16.33■□□□□ 0.2
TPM1-209ENST00000558072 PLEKHF1Q96S99 279 aa16.32■□□□□ 0.2
TPM1-209ENST00000558072 CDCA7Q9BWT1 371 aaPredicted RBP16.32■□□□□ 0.2
TPM1-209ENST00000558072 TRPC5Q9UL62 973 aaPredicted RBP16.32■□□□□ 0.2
TPM1-209ENST00000558072 THRAP3Q9Y2W1 955 aaKnown RBP16.32■□□□□ 0.2
TPM1-209ENST00000558072 BRWD3Q6RI45 1802 aa16.31■□□□□ 0.2
TPM1-209ENST00000558072 PKD1L3Q7Z443 1732 aa16.31■□□□□ 0.2
TPM1-209ENST00000558072 ZBED9Q6R2W3 1325 aa16.31■□□□□ 0.2
TPM1-209ENST00000558072 CCDC27Q2M243 656 aa16.31■□□□□ 0.2
TPM1-209ENST00000558072 PLEKHO1Q53GL0 409 aaPredicted RBP16.31■□□□□ 0.2
TPM1-209ENST00000558072 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.31■□□□□ 0.23e-8■■■■■ 31
TPM1-209ENST00000558072 TATP17735 454 aaPredicted RBP16.3■□□□□ 0.2
TPM1-209ENST00000558072 CALD1Q05682 793 aaKnown RBP16.3■□□□□ 0.2
TPM1-209ENST00000558072 PDE3BQ13370 1112 aa16.3■□□□□ 0.2
TPM1-209ENST00000558072 TCP11L2Q8N4U5 519 aa16.3■□□□□ 0.2
TPM1-209ENST00000558072 GJD4Q96KN9 370 aaPredicted RBP16.3■□□□□ 0.2
TPM1-209ENST00000558072 YTHDC1Q96MU7 727 aaKnown RBP16.3■□□□□ 0.2
TPM1-209ENST00000558072 RGS12O14924 1447 aa16.29■□□□□ 0.2
TPM1-209ENST00000558072 A0A0G2JS52 829 aa16.29■□□□□ 0.2
TPM1-209ENST00000558072 APAF1O14727 1248 aa16.29■□□□□ 0.2
TPM1-209ENST00000558072 MYT1Q01538 1121 aa16.29■□□□□ 0.2
TPM1-209ENST00000558072 NFE2L2Q16236 605 aa16.29■□□□□ 0.2
TPM1-209ENST00000558072 ZNF772Q68DY9 489 aaPredicted RBP16.29■□□□□ 0.2
TPM1-209ENST00000558072 OVOS2A0A0G2JMS6 1433 aa16.28■□□□□ 0.2
TPM1-209ENST00000558072 HTATSF1O43719 755 aaKnown RBP16.28■□□□□ 0.2
TPM1-209ENST00000558072 PHACTR3Q96KR7 559 aa16.28■□□□□ 0.2
TPM1-209ENST00000558072 SPG7Q9UQ90 795 aa16.28■□□□□ 0.2
TPM1-209ENST00000558072 CENPBP07199 599 aaPredicted RBP16.27■□□□□ 0.2
TPM1-209ENST00000558072 TMPOP42166 694 aaKnown RBP16.27■□□□□ 0.2
TPM1-209ENST00000558072 DLG5Q8TDM6 1919 aa16.26■□□□□ 0.19
TPM1-209ENST00000558072 IL2RBP14784 551 aa16.26■□□□□ 0.19
TPM1-209ENST00000558072 RIPK4P57078 832 aa16.26■□□□□ 0.19
TPM1-209ENST00000558072 FAM182BQ5T319 152 aa16.26■□□□□ 0.19
TPM1-209ENST00000558072 RTF1Q92541 710 aaKnown RBP16.26■□□□□ 0.19
TPM1-209ENST00000558072 RRP7AQ9Y3A4 280 aaKnown RBP16.26■□□□□ 0.19
TPM1-209ENST00000558072 TNS2Q63HR2 1409 aa16.26■□□□□ 0.19
TPM1-209ENST00000558072 C1orf141Q5JVX7 400 aa16.25■□□□□ 0.19
TPM1-209ENST00000558072 WDR63Q8IWG1 891 aa16.25■□□□□ 0.19
TPM1-209ENST00000558072 TOGARAM1Q9Y4F4 1720 aa16.25■□□□□ 0.19
TPM1-209ENST00000558072 HSP90AB1P08238 724 aaKnown RBP16.24■□□□□ 0.19
TPM1-209ENST00000558072 VIRMAQ69YN4 1812 aaKnown RBP16.24■□□□□ 0.19
TPM1-209ENST00000558072 MTHFSDQ2M296 383 aaKnown RBP16.23■□□□□ 0.19
TPM1-209ENST00000558072 BARGINQ6ZT62 677 aa16.23■□□□□ 0.19
TPM1-209ENST00000558072 SEPT12Q8IYM1 358 aa16.23■□□□□ 0.19
TPM1-209ENST00000558072 GNAT3A8MTJ3 354 aa16.22■□□□□ 0.19
TPM1-209ENST00000558072 RXRBP28702 533 aa16.22■□□□□ 0.19
TPM1-209ENST00000558072 RBM6P78332 1123 aaKnown RBP16.22■□□□□ 0.19
TPM1-209ENST00000558072 AKAP4Q5JQC9 854 aa16.22■□□□□ 0.19
TPM1-209ENST00000558072 DOT1LQ8TEK3 1739 aa16.22■□□□□ 0.19
TPM1-209ENST00000558072 IL16Q14005 1332 aa16.21■□□□□ 0.19
TPM1-209ENST00000558072 GOLGA2Q08379 1002 aa16.21■□□□□ 0.19
TPM1-209ENST00000558072 NEUROD2Q15784 382 aa16.21■□□□□ 0.19
TPM1-209ENST00000558072 ZNF530Q6P9A1 599 aaPredicted RBP16.21■□□□□ 0.19
TPM1-209ENST00000558072 WWC1Q8IX03 1113 aa16.21■□□□□ 0.19
TPM1-209ENST00000558072 SALL2Q9Y467 1007 aaPredicted RBP16.21■□□□□ 0.19
TPM1-209ENST00000558072 CYP27B1O15528 508 aa16.2■□□□□ 0.18
TPM1-209ENST00000558072 IFNL2Q8IZJ0 200 aa16.2■□□□□ 0.18
TPM1-209ENST00000558072 ZCRB1Q8TBF4 217 aaKnown RBP16.2■□□□□ 0.18
TPM1-209ENST00000558072 DDX54Q8TDD1 881 aaKnown RBP16.2■□□□□ 0.18
TPM1-209ENST00000558072 PCDH11XQ9BZA7 1347 aa16.19■□□□□ 0.18
TPM1-209ENST00000558072 PCDH11YQ9BZA8 1340 aa16.19■□□□□ 0.18
TPM1-209ENST00000558072 MAP3K5Q99683 1374 aa16.19■□□□□ 0.18
TPM1-209ENST00000558072 E9PSI1 815 aa16.19■□□□□ 0.18
TPM1-209ENST00000558072 EXOC5O00471 708 aa16.19■□□□□ 0.18
TPM1-209ENST00000558072 DDB1Q16531 1140 aa16.19■□□□□ 0.18
TPM1-209ENST00000558072 MARCH10Q8NA82 808 aaPredicted RBP16.19■□□□□ 0.18
TPM1-209ENST00000558072 KDM6AO15550 1401 aaPredicted RBP16.19■□□□□ 0.18
TPM1-209ENST00000558072 DCTN1Q14203 1278 aa16.18■□□□□ 0.18
TPM1-209ENST00000558072 THUMPD2Q9BTF0 503 aaKnown RBP16.18■□□□□ 0.18
TPM1-209ENST00000558072 MYH16Q9H6N6 1097 aa16.18■□□□□ 0.18
TPM1-209ENST00000558072 ZNF521Q96K83 1311 aa16.18■□□□□ 0.18
TPM1-209ENST00000558072 BABAM1Q9NWV8 329 aa16.17■□□□□ 0.18
TPM1-209ENST00000558072 SCN11AQ9UI33 1791 aa16.16■□□□□ 0.18
TPM1-209ENST00000558072 ONECUT3O60422 494 aaPredicted RBP16.16■□□□□ 0.18
TPM1-209ENST00000558072 PHKG2P15735 406 aa16.16■□□□□ 0.18
TPM1-209ENST00000558072 GNAI1P63096 354 aa16.16■□□□□ 0.18
TPM1-209ENST00000558072 TRIM35Q9UPQ4 493 aa16.16■□□□□ 0.18
TPM1-209ENST00000558072 DCAF5Q96JK2 942 aa16.15■□□□□ 0.18
TPM1-209ENST00000558072 ADAMTS7Q9UKP4 1686 aa16.14■□□□□ 0.18
TPM1-209ENST00000558072 MPRIPQ6WCQ1 1025 aa16.14■□□□□ 0.17
TPM1-209ENST00000558072 MCM10Q7L590 875 aa16.14■□□□□ 0.17
TPM1-209ENST00000558072 PTF1AQ7RTS3 328 aa16.14■□□□□ 0.17
TPM1-209ENST00000558072 ACSBG1Q96GR2 724 aa16.14■□□□□ 0.17
TPM1-209ENST00000558072 LGR6Q9HBX8 967 aa16.14■□□□□ 0.17
TPM1-209ENST00000558072 IFT57Q9NWB7 429 aa16.14■□□□□ 0.17
TPM1-209ENST00000558072 ITGB4P16144 1822 aa16.13■□□□□ 0.17
TPM1-209ENST00000558072 SBF2Q86WG5 1849 aa16.13■□□□□ 0.17
TPM1-209ENST00000558072 TEFQ10587 303 aa16.13■□□□□ 0.17
TPM1-209ENST00000558072 CHMP4AQ9BY43 222 aa16.13■□□□□ 0.17
TPM1-209ENST00000558072 SLFN5Q08AF3 891 aa16.12■□□□□ 0.17
TPM1-209ENST00000558072 NKX1-1Q15270 411 aaPredicted RBP16.12■□□□□ 0.17
TPM1-209ENST00000558072 KRT27Q7Z3Y8 459 aa16.12■□□□□ 0.17
TPM1-209ENST00000558072 CFAP44Q96MT7 982 aa16.12■□□□□ 0.17
TPM1-209ENST00000558072 SIPA1L3O60292 1781 aaPredicted RBP16.11■□□□□ 0.17
TPM1-209ENST00000558072 ILDR2Q71H61 639 aa16.11■□□□□ 0.17
TPM1-209ENST00000558072 NHSQ6T4R5 1651 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms