RNA–Protein interactions for RNA: ENST00000538239.5

LRP6-203, Transcript of LDL receptor related protein 6, humanhuman

TSL 1 (best)

Gene LRP6, Length 7,812 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRP6-203ENST00000538239 TSHZ2Q9NRE2 1034 aa6.43□□□□□ -1.38
LRP6-203ENST00000538239 ZNF518AQ6AHZ1 1483 aa6.43□□□□□ -1.38
LRP6-203ENST00000538239 ZSCAN25Q6NSZ9 544 aa6.42□□□□□ -1.38
LRP6-203ENST00000538239 TMOD2Q9NZR1 351 aa6.42□□□□□ -1.38
LRP6-203ENST00000538239 GPATCH8Q9UKJ3 1502 aaKnown RBP6.42□□□□□ -1.38
LRP6-203ENST00000538239 RIMS2Q9UQ26 1411 aa6.42□□□□□ -1.38
LRP6-203ENST00000538239 RFC4P35249 363 aa6.42□□□□□ -1.38
LRP6-203ENST00000538239 PIBF1Q8WXW3 757 aa6.42□□□□□ -1.38
LRP6-203ENST00000538239 ZNF622Q969S3 477 aaKnown RBP eCLIP6.42□□□□□ -1.384e-7■■■□□ 15.6
LRP6-203ENST00000538239 CDK5RAP3Q96JB5 506 aa6.42□□□□□ -1.38
LRP6-203ENST00000538239 GCC1Q96CN9 775 aa6.42□□□□□ -1.38
LRP6-203ENST00000538239 ZBTB3Q9H5J0 574 aa6.42□□□□□ -1.38
LRP6-203ENST00000538239 PBRM1Q86U86 1689 aa6.42□□□□□ -1.38
LRP6-203ENST00000538239 FBLN1P23142 703 aa6.42□□□□□ -1.38
LRP6-203ENST00000538239 EPS15P42566 896 aa6.42□□□□□ -1.38
LRP6-203ENST00000538239 ATF7IPQ6VMQ6 1270 aa6.42□□□□□ -1.38
LRP6-203ENST00000538239 IBSPP21815 317 aaPredicted RBP6.41□□□□□ -1.38
LRP6-203ENST00000538239 CAVIN4Q5BKX8 364 aa6.41□□□□□ -1.38
LRP6-203ENST00000538239 WWC2Q6AWC2 1192 aa6.41□□□□□ -1.38
LRP6-203ENST00000538239 NUTM1Q86Y26 1132 aa6.41□□□□□ -1.38
LRP6-203ENST00000538239 C14orf93Q9H972 538 aaKnown RBP6.41□□□□□ -1.38
LRP6-203ENST00000538239 KIAA0556O60303 1618 aa6.41□□□□□ -1.38
LRP6-203ENST00000538239 DUOX2Q9NRD8 1548 aa6.41□□□□□ -1.38
LRP6-203ENST00000538239 CCAR2Q8N163 923 aaKnown RBP6.41□□□□□ -1.38
LRP6-203ENST00000538239 AAMPQ13685 434 aa6.41□□□□□ -1.38
LRP6-203ENST00000538239 FMNL2Q96PY5 1086 aa6.41□□□□□ -1.38
LRP6-203ENST00000538239 USP5P45974 858 aa6.41□□□□□ -1.38
LRP6-203ENST00000538239 CCDC73Q6ZRK6 1079 aa6.41□□□□□ -1.38
LRP6-203ENST00000538239 IFNL2Q8IZJ0 200 aa6.41□□□□□ -1.38
LRP6-203ENST00000538239 WWC3Q9ULE0 1092 aa6.41□□□□□ -1.38
LRP6-203ENST00000538239 ZSCAN21Q9Y5A6 473 aaPredicted RBP6.41□□□□□ -1.38
LRP6-203ENST00000538239 LARP1Q6PKG0 1096 aaKnown RBP6.41□□□□□ -1.38
LRP6-203ENST00000538239 KRT18P05783 430 aaKnown RBP6.41□□□□□ -1.38
LRP6-203ENST00000538239 CEBPZQ03701 1054 aaKnown RBP6.41□□□□□ -1.38
LRP6-203ENST00000538239 SASS6Q6UVJ0 657 aa6.41□□□□□ -1.38
LRP6-203ENST00000538239 SCAF11Q99590 1463 aaKnown RBP6.4□□□□□ -1.38
LRP6-203ENST00000538239 NPHP3Q7Z494 1330 aa6.4□□□□□ -1.38
LRP6-203ENST00000538239 MVPQ14764 893 aaKnown RBP6.4□□□□□ -1.38
LRP6-203ENST00000538239 CWC27Q6UX04 472 aaKnown RBP6.4□□□□□ -1.38
LRP6-203ENST00000538239 CRACR2BQ8N4Y2 399 aaPredicted RBP6.4□□□□□ -1.38
LRP6-203ENST00000538239 C6orf229H3BNL8 230 aa6.4□□□□□ -1.38
LRP6-203ENST00000538239 POLR3DP05423 398 aaPredicted RBP6.4□□□□□ -1.38
LRP6-203ENST00000538239 PPIP5K1Q6PFW1 1433 aa6.4□□□□□ -1.38
LRP6-203ENST00000538239 TRAPPC8Q9Y2L5 1435 aa6.4□□□□□ -1.38
LRP6-203ENST00000538239 NEK4P51957 841 aa6.4□□□□□ -1.39
LRP6-203ENST00000538239 CCDC184Q52MB2 194 aa6.4□□□□□ -1.39
LRP6-203ENST00000538239 DZIP1Q86YF9 867 aaKnown RBP6.4□□□□□ -1.39
LRP6-203ENST00000538239 F6X3S4 739 aa6.4□□□□□ -1.39
LRP6-203ENST00000538239 ATP6V1AP38606 617 aa6.4□□□□□ -1.39
LRP6-203ENST00000538239 IFIT5Q13325 482 aaKnown RBP6.4□□□□□ -1.39
LRP6-203ENST00000538239 SOGA3Q5TF21 947 aa6.4□□□□□ -1.39
LRP6-203ENST00000538239 AIDAQ96BJ3 306 aa6.4□□□□□ -1.39
LRP6-203ENST00000538239 IFT57Q9NWB7 429 aa6.4□□□□□ -1.39
LRP6-203ENST00000538239 NUP153P49790 1475 aaKnown RBP6.39□□□□□ -1.39
LRP6-203ENST00000538239 IFIT1P09914 478 aaKnown RBP6.39□□□□□ -1.39
LRP6-203ENST00000538239 CHMP4BP1P59074 171 aa6.39□□□□□ -1.39
LRP6-203ENST00000538239 SKOR2Q2VWA4 1001 aaPredicted RBP6.39□□□□□ -1.39
LRP6-203ENST00000538239 HSP90AB3PQ58FF7 597 aa6.39□□□□□ -1.39
LRP6-203ENST00000538239 NAP1L1P55209 391 aaKnown RBP6.39□□□□□ -1.39
LRP6-203ENST00000538239 ST5P78524 1137 aa6.39□□□□□ -1.39
LRP6-203ENST00000538239 TMEM57Q8N5G2 664 aa6.39□□□□□ -1.39
LRP6-203ENST00000538239 ZCRB1Q8TBF4 217 aaKnown RBP6.39□□□□□ -1.39
LRP6-203ENST00000538239 ATP5J2-PTCD1G3V325 749 aa6.39□□□□□ -1.39
LRP6-203ENST00000538239 JARID2Q92833 1246 aaPredicted RBP6.39□□□□□ -1.39
LRP6-203ENST00000538239 UBAC1Q9BSL1 405 aa6.39□□□□□ -1.39
LRP6-203ENST00000538239 FBXO3Q9UK99 471 aa6.39□□□□□ -1.39
LRP6-203ENST00000538239 EXOC6BQ9Y2D4 811 aa6.39□□□□□ -1.39
LRP6-203ENST00000538239 AKAP2Q9Y2D5 859 aa6.39□□□□□ -1.39
LRP6-203ENST00000538239 ANKRD18BA2A2Z9 1011 aa6.39□□□□□ -1.39
LRP6-203ENST00000538239 CT47B1P0C2W7 299 aaPredicted RBP6.39□□□□□ -1.39
LRP6-203ENST00000538239 PDE3AQ14432 1141 aa6.39□□□□□ -1.39
LRP6-203ENST00000538239 CT47A1Q5JQC4 288 aaPredicted RBP6.39□□□□□ -1.39
LRP6-203ENST00000538239 OLFM4Q6UX06 510 aa6.39□□□□□ -1.39
LRP6-203ENST00000538239 ZHX3Q9H4I2 956 aa6.39□□□□□ -1.39
LRP6-203ENST00000538239 TTC21BQ7Z4L5 1316 aa6.39□□□□□ -1.39
LRP6-203ENST00000538239 SMARCA5O60264 1052 aaPredicted RBP6.39□□□□□ -1.39
LRP6-203ENST00000538239 IPO7O95373 1038 aaKnown RBP6.39□□□□□ -1.39
LRP6-203ENST00000538239 MAP3K2Q9Y2U5 619 aa6.39□□□□□ -1.39
LRP6-203ENST00000538239 FAM83GA6ND36 823 aa6.38□□□□□ -1.39
LRP6-203ENST00000538239 MINDY4BA8MYZ0 360 aa6.38□□□□□ -1.39
LRP6-203ENST00000538239 MYCNP04198 464 aaPredicted RBP6.38□□□□□ -1.39
LRP6-203ENST00000538239 SLC5A1P13866 664 aa6.38□□□□□ -1.39
LRP6-203ENST00000538239 CYP46A1Q9Y6A2 500 aa6.38□□□□□ -1.39
LRP6-203ENST00000538239 ZNF592Q92610 1267 aa6.38□□□□□ -1.39
LRP6-203ENST00000538239 ZMYM3Q14202 1370 aa6.38□□□□□ -1.39
LRP6-203ENST00000538239 DISP3Q9P2K9 1392 aa6.38□□□□□ -1.39
LRP6-203ENST00000538239 ZNF76P36508 570 aa6.38□□□□□ -1.39
LRP6-203ENST00000538239 DDB1Q16531 1140 aa6.38□□□□□ -1.39
LRP6-203ENST00000538239 HYPKQ9NX55 129 aa6.38□□□□□ -1.39
LRP6-203ENST00000538239 NUCB2P80303 420 aa6.38□□□□□ -1.39
LRP6-203ENST00000538239 SLC4A8Q2Y0W8 1093 aa6.38□□□□□ -1.39
LRP6-203ENST00000538239 CHD1LQ86WJ1 897 aa6.38□□□□□ -1.39
LRP6-203ENST00000538239 TRIM22Q8IYM9 498 aa6.38□□□□□ -1.39
LRP6-203ENST00000538239 CHMP5Q9NZZ3 219 aa6.38□□□□□ -1.39
LRP6-203ENST00000538239 A0A087WZG4 1122 aa6.38□□□□□ -1.39
LRP6-203ENST00000538239 ZFYVE27Q5T4F4 411 aa6.38□□□□□ -1.39
LRP6-203ENST00000538239 DDX46Q7L014 1031 aaKnown RBP6.38□□□□□ -1.39
LRP6-203ENST00000538239 GOLGA6L1Q8N7Z2 621 aa6.38□□□□□ -1.39
LRP6-203ENST00000538239 TXLNAP40222 546 aa6.38□□□□□ -1.39
LRP6-203ENST00000538239 ODF2Q5BJF6 829 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms