RNA–Protein interactions for RNA: ENST00000520497.1

VAPB-206, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 937 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-206ENST00000520497 TMPOP42166 694 aaKnown RBP11.24□□□□□ -0.61
VAPB-206ENST00000520497 HAP1P54257 671 aaPredicted RBP11.24□□□□□ -0.61
VAPB-206ENST00000520497 CHRNA2Q15822 529 aa11.24□□□□□ -0.61
VAPB-206ENST00000520497 CCDC27Q2M243 656 aa11.24□□□□□ -0.61
VAPB-206ENST00000520497 NBPF6Q5VWK0 638 aa11.24□□□□□ -0.61
VAPB-206ENST00000520497 FNBP4Q8N3X1 1017 aaPredicted RBP11.24□□□□□ -0.61
VAPB-206ENST00000520497 LTV1Q96GA3 475 aaPredicted RBP11.24□□□□□ -0.61
VAPB-206ENST00000520497 PHACTR3Q96KR7 559 aa11.24□□□□□ -0.61
VAPB-206ENST00000520497 NBPF4Q96M43 638 aa11.24□□□□□ -0.61
VAPB-206ENST00000520497 MAPK8IP3Q9UPT6 1336 aa11.24□□□□□ -0.61
VAPB-206ENST00000520497 ADAMTS7Q9UKP4 1686 aa11.24□□□□□ -0.61
VAPB-206ENST00000520497 SIPA1L3O60292 1781 aaPredicted RBP11.23□□□□□ -0.61
VAPB-206ENST00000520497 PDE3BQ13370 1112 aa11.23□□□□□ -0.61
VAPB-206ENST00000520497 PLEKHG2Q9H7P9 1386 aa11.23□□□□□ -0.61
VAPB-206ENST00000520497 ATRNO75882 1429 aa11.23□□□□□ -0.61
VAPB-206ENST00000520497 BCL9LQ86UU0 1499 aa11.23□□□□□ -0.61
VAPB-206ENST00000520497 RRP7AQ9Y3A4 280 aaKnown RBP11.22□□□□□ -0.61
VAPB-206ENST00000520497 SALL2Q9Y467 1007 aaPredicted RBP11.22□□□□□ -0.61
VAPB-206ENST00000520497 WDR17Q8IZU2 1322 aa11.21□□□□□ -0.61
VAPB-206ENST00000520497 FAM83GA6ND36 823 aa11.21□□□□□ -0.61
VAPB-206ENST00000520497 SLC4A2P04920 1241 aa11.21□□□□□ -0.61
VAPB-206ENST00000520497 NEFMP07197 916 aa11.21□□□□□ -0.61
VAPB-206ENST00000520497 NFE2L2Q16236 605 aa11.21□□□□□ -0.61
VAPB-206ENST00000520497 WWC1Q8IX03 1113 aa11.21□□□□□ -0.61
VAPB-206ENST00000520497 USHBP1Q8N6Y0 703 aa11.21□□□□□ -0.61
VAPB-206ENST00000520497 TRIM35Q9UPQ4 493 aa11.21□□□□□ -0.61
VAPB-206ENST00000520497 MEGF6O75095 1541 aa11.2□□□□□ -0.62
VAPB-206ENST00000520497 SLIT2O94813 1529 aa11.2□□□□□ -0.62
VAPB-206ENST00000520497 TRPC5Q9UL62 973 aaPredicted RBP11.2□□□□□ -0.62
VAPB-206ENST00000520497 RIPK4P57078 832 aa11.19□□□□□ -0.62
VAPB-206ENST00000520497 NEUROD2Q15784 382 aa11.19□□□□□ -0.62
VAPB-206ENST00000520497 CDCA7LQ96GN5 454 aa11.19□□□□□ -0.62
VAPB-206ENST00000520497 CRB1P82279 1406 aa11.18□□□□□ -0.62
VAPB-206ENST00000520497 KDM3BQ7LBC6 1761 aa11.18□□□□□ -0.62
VAPB-206ENST00000520497 CACNA1FO60840 1977 aa11.18□□□□□ -0.62
VAPB-206ENST00000520497 GOLGA2Q08379 1002 aa11.18□□□□□ -0.62
VAPB-206ENST00000520497 WDR63Q8IWG1 891 aa11.18□□□□□ -0.62
VAPB-206ENST00000520497 TRMT2AQ8IZ69 625 aaKnown RBP11.18□□□□□ -0.62
VAPB-206ENST00000520497 GLI3P10071 1580 aa11.18□□□□□ -0.62
VAPB-206ENST00000520497 IL16Q14005 1332 aa11.17□□□□□ -0.62
VAPB-206ENST00000520497 KAT6BQ8WYB5 2073 aa11.17□□□□□ -0.62
VAPB-206ENST00000520497 NEFLP07196 543 aa11.17□□□□□ -0.62
VAPB-206ENST00000520497 CSB-PGBD3P0DP91 1061 aa11.17□□□□□ -0.62
VAPB-206ENST00000520497 SLFN5Q08AF3 891 aa11.17□□□□□ -0.62
VAPB-206ENST00000520497 MTHFSDQ2M296 383 aaKnown RBP11.17□□□□□ -0.62
VAPB-206ENST00000520497 GAS2L2Q8NHY3 880 aa11.17□□□□□ -0.62
VAPB-206ENST00000520497 SPINK5Q9NQ38 1064 aaPredicted RBP11.17□□□□□ -0.62
VAPB-206ENST00000520497 NLRP2Q9NX02 1062 aa11.17□□□□□ -0.62
VAPB-206ENST00000520497 BTG4Q9NY30 223 aa11.17□□□□□ -0.62
VAPB-206ENST00000520497 OVOS2A0A0G2JMS6 1433 aa11.17□□□□□ -0.62
VAPB-206ENST00000520497 ITGB4P16144 1822 aa11.16□□□□□ -0.62
VAPB-206ENST00000520497 LMOD3Q0VAK6 560 aa11.16□□□□□ -0.62
VAPB-206ENST00000520497 DUSP27Q5VZP5 1158 aa11.16□□□□□ -0.62
VAPB-206ENST00000520497 GJD4Q96KN9 370 aaPredicted RBP11.16□□□□□ -0.62
VAPB-206ENST00000520497 CARD10Q9BWT7 1032 aa11.16□□□□□ -0.62
VAPB-206ENST00000520497 DISP2A7MBM2 1401 aa11.16□□□□□ -0.62
VAPB-206ENST00000520497 MAP3K5Q99683 1374 aa11.16□□□□□ -0.62
VAPB-206ENST00000520497 E9PSI1 815 aa11.15□□□□□ -0.62
VAPB-206ENST00000520497 TOGARAM1Q9Y4F4 1720 aa11.15□□□□□ -0.63
VAPB-206ENST00000520497 HTATSF1O43719 755 aaKnown RBP11.14□□□□□ -0.63
VAPB-206ENST00000520497 AMOTQ4VCS5 1084 aa11.14□□□□□ -0.63
VAPB-206ENST00000520497 LARP1Q6PKG0 1096 aaKnown RBP11.14□□□□□ -0.63
VAPB-206ENST00000520497 TOM1L2Q6ZVM7 507 aa11.14□□□□□ -0.63
VAPB-206ENST00000520497 UNC5CLQ8IV45 518 aa11.14□□□□□ -0.63
VAPB-206ENST00000520497 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.14□□□□□ -0.632e-8■□□□□ 10.4
VAPB-206ENST00000520497 GTF3C3Q9Y5Q9 886 aa11.14□□□□□ -0.63
VAPB-206ENST00000520497 TATP17735 454 aaPredicted RBP11.13□□□□□ -0.63
VAPB-206ENST00000520497 PLEKHO1Q53GL0 409 aaPredicted RBP11.13□□□□□ -0.63
VAPB-206ENST00000520497 RAPGEF4Q8WZA2 1011 aa11.13□□□□□ -0.63
VAPB-206ENST00000520497 STRN4Q9NRL3 753 aa11.13□□□□□ -0.63
VAPB-206ENST00000520497 CEMIPQ8WUJ3 1361 aa11.13□□□□□ -0.63
VAPB-206ENST00000520497 MRC1P22897 1456 aa11.12□□□□□ -0.63
VAPB-206ENST00000520497 BRWD3Q6RI45 1802 aa11.12□□□□□ -0.63
VAPB-206ENST00000520497 GNAT3A8MTJ3 354 aa11.12□□□□□ -0.63
VAPB-206ENST00000520497 ZNF853P0CG23 659 aa11.12□□□□□ -0.63
VAPB-206ENST00000520497 EVA1CP58658 441 aa11.12□□□□□ -0.63
VAPB-206ENST00000520497 CALD1Q05682 793 aaKnown RBP11.12□□□□□ -0.63
VAPB-206ENST00000520497 THUMPD2Q9BTF0 503 aaKnown RBP11.12□□□□□ -0.63
VAPB-206ENST00000520497 THSD7AQ9UPZ6 1657 aa11.11□□□□□ -0.63
VAPB-206ENST00000520497 UBR2Q8IWV8 1755 aa11.11□□□□□ -0.63
VAPB-206ENST00000520497 PAPPAQ13219 1627 aa11.11□□□□□ -0.63
VAPB-206ENST00000520497 DCTN1Q14203 1278 aa11.11□□□□□ -0.63
VAPB-206ENST00000520497 AKAP4Q5JQC9 854 aa11.11□□□□□ -0.63
VAPB-206ENST00000520497 ZNF530Q6P9A1 599 aaPredicted RBP11.11□□□□□ -0.63
VAPB-206ENST00000520497 SEPT12Q8IYM1 358 aa11.11□□□□□ -0.63
VAPB-206ENST00000520497 MYH16Q9H6N6 1097 aa11.11□□□□□ -0.63
VAPB-206ENST00000520497 IFT57Q9NWB7 429 aa11.11□□□□□ -0.63
VAPB-206ENST00000520497 FANCIQ9NVI1 1328 aa11.1□□□□□ -0.63
VAPB-206ENST00000520497 DOT1LQ8TEK3 1739 aa11.1□□□□□ -0.63
VAPB-206ENST00000520497 IL2RBP14784 551 aa11.1□□□□□ -0.63
VAPB-206ENST00000520497 MCM10Q7L590 875 aa11.1□□□□□ -0.63
VAPB-206ENST00000520497 DEFB132Q7Z7B7 95 aa11.1□□□□□ -0.63
VAPB-206ENST00000520497 RTF1Q92541 710 aaKnown RBP11.1□□□□□ -0.63
VAPB-206ENST00000520497 SPATA31A1Q5TZJ5 1347 aa11.09□□□□□ -0.63
VAPB-206ENST00000520497 SPATA31A5Q5VU36 1347 aa11.09□□□□□ -0.63
VAPB-206ENST00000520497 SPATA31A7Q8IWB4 1347 aa11.09□□□□□ -0.63
VAPB-206ENST00000520497 KDM6AO15550 1401 aaPredicted RBP11.09□□□□□ -0.63
VAPB-206ENST00000520497 GNAI1P63096 354 aa11.09□□□□□ -0.63
VAPB-206ENST00000520497 VPS72Q15906 364 aa11.09□□□□□ -0.63
VAPB-206ENST00000520497 FAM182BQ5T319 152 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms