RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 ANP32CO43423 234 aa13.2□□□□□ -0.3
TOPBP1-209ENST00000513818 NCAPD2Q15021 1401 aa13.2□□□□□ -0.3
TOPBP1-209ENST00000513818 EP400Q96L91 3159 aa13.2□□□□□ -0.3
TOPBP1-209ENST00000513818 IGSF1Q8N6C5 1336 aa13.19□□□□□ -0.3
TOPBP1-209ENST00000513818 U2SURPO15042 1029 aaKnown RBP13.19□□□□□ -0.3
TOPBP1-209ENST00000513818 DIAPH1O60610 1272 aaKnown RBP13.19□□□□□ -0.3
TOPBP1-209ENST00000513818 BARGINQ6ZT62 677 aa13.19□□□□□ -0.3
TOPBP1-209ENST00000513818 CFAP53Q96M91 514 aa13.19□□□□□ -0.3
TOPBP1-209ENST00000513818 TNS2Q63HR2 1409 aa13.19□□□□□ -0.3
TOPBP1-209ENST00000513818 HMOX1P09601 288 aa13.18□□□□□ -0.3
TOPBP1-209ENST00000513818 FKBP8Q14318 412 aa13.18□□□□□ -0.3
TOPBP1-209ENST00000513818 CCDC184Q52MB2 194 aa13.18□□□□□ -0.3
TOPBP1-209ENST00000513818 FAM182BQ5T319 152 aa13.18□□□□□ -0.3
TOPBP1-209ENST00000513818 THRAP3Q9Y2W1 955 aaKnown RBP13.18□□□□□ -0.3
TOPBP1-209ENST00000513818 PKD1L3Q7Z443 1732 aa13.17□□□□□ -0.3
TOPBP1-209ENST00000513818 OVOS2A0A0G2JMS6 1433 aa13.17□□□□□ -0.3
TOPBP1-209ENST00000513818 IL2RBP14784 551 aa13.17□□□□□ -0.3
TOPBP1-209ENST00000513818 SULT6B1Q6IMI4 303 aa13.16□□□□□ -0.3
TOPBP1-209ENST00000513818 ONECUT3O60422 494 aaPredicted RBP13.15□□□□□ -0.3
TOPBP1-209ENST00000513818 DDB1Q16531 1140 aa13.15□□□□□ -0.3
TOPBP1-209ENST00000513818 RAPGEF4Q8WZA2 1011 aa13.15□□□□□ -0.3
TOPBP1-209ENST00000513818 DIEXFQ68CQ4 756 aaKnown RBP13.14□□□□□ -0.31
TOPBP1-209ENST00000513818 KDRP35968 1356 aa13.14□□□□□ -0.31
TOPBP1-209ENST00000513818 U2AF1L5P0DN76 240 aaPredicted RBP13.13□□□□□ -0.31
TOPBP1-209ENST00000513818 TATP17735 454 aaPredicted RBP13.13□□□□□ -0.31
TOPBP1-209ENST00000513818 U2AF1Q01081 240 aaKnown RBP eCLIP13.13□□□□□ -0.31
TOPBP1-209ENST00000513818 KRT27Q7Z3Y8 459 aa13.13□□□□□ -0.31
TOPBP1-209ENST00000513818 DOT1LQ8TEK3 1739 aa13.12□□□□□ -0.31
TOPBP1-209ENST00000513818 TOGARAM1Q9Y4F4 1720 aa13.11□□□□□ -0.31
TOPBP1-209ENST00000513818 PDE3BQ13370 1112 aa13.11□□□□□ -0.31
TOPBP1-209ENST00000513818 MARCH10Q8NA82 808 aaPredicted RBP13.11□□□□□ -0.31
TOPBP1-209ENST00000513818 DDX54Q8TDD1 881 aaKnown RBP13.11□□□□□ -0.31
TOPBP1-209ENST00000513818 CDCA7Q9BWT1 371 aaPredicted RBP13.11□□□□□ -0.31
TOPBP1-209ENST00000513818 RSPH6AQ9H0K4 717 aa13.11□□□□□ -0.31
TOPBP1-209ENST00000513818 MRS2Q9HD23 443 aa13.11□□□□□ -0.31
TOPBP1-209ENST00000513818 NUDCQ9Y266 331 aa13.11□□□□□ -0.31
TOPBP1-209ENST00000513818 EXOC5O00471 708 aa13.1□□□□□ -0.31
TOPBP1-209ENST00000513818 PRKAR2BP31323 418 aa13.1□□□□□ -0.31
TOPBP1-209ENST00000513818 ZCRB1Q8TBF4 217 aaKnown RBP13.1□□□□□ -0.31
TOPBP1-209ENST00000513818 SPINK5Q9NQ38 1064 aaPredicted RBP13.09□□□□□ -0.31
TOPBP1-209ENST00000513818 SBF2Q86WG5 1849 aa13.09□□□□□ -0.31
TOPBP1-209ENST00000513818 CYP27B1O15528 508 aa13.08□□□□□ -0.32
TOPBP1-209ENST00000513818 CCDC146Q8IYE0 955 aa13.08□□□□□ -0.32
TOPBP1-209ENST00000513818 PCDH11XQ9BZA7 1347 aa13.08□□□□□ -0.32
TOPBP1-209ENST00000513818 PCDH11YQ9BZA8 1340 aa13.08□□□□□ -0.32
TOPBP1-209ENST00000513818 TNS1Q9HBL0 1735 aaKnown RBP13.08□□□□□ -0.32
TOPBP1-209ENST00000513818 WDR43Q15061 677 aaKnown RBP eCLIP13.07□□□□□ -0.32
TOPBP1-209ENST00000513818 ZNF530Q6P9A1 599 aaPredicted RBP13.07□□□□□ -0.32
TOPBP1-209ENST00000513818 MIER1Q8N108 512 aa13.07□□□□□ -0.32
TOPBP1-209ENST00000513818 ACSBG1Q96GR2 724 aa13.07□□□□□ -0.32
TOPBP1-209ENST00000513818 NHSQ6T4R5 1651 aa13.07□□□□□ -0.32
TOPBP1-209ENST00000513818 VIRMAQ69YN4 1812 aaKnown RBP13.06□□□□□ -0.32
TOPBP1-209ENST00000513818 SENP3-EIF4A1A0A087X0R7 540 aa13.06□□□□□ -0.32
TOPBP1-209ENST00000513818 PLCB2Q00722 1185 aa13.06□□□□□ -0.32
TOPBP1-209ENST00000513818 MTHFSDQ2M296 383 aaKnown RBP13.06□□□□□ -0.32
TOPBP1-209ENST00000513818 PTF1AQ7RTS3 328 aa13.06□□□□□ -0.32
TOPBP1-209ENST00000513818 PHACTR3Q96KR7 559 aa13.06□□□□□ -0.32
TOPBP1-209ENST00000513818 SPG7Q9UQ90 795 aa13.06□□□□□ -0.32
TOPBP1-209ENST00000513818 PRKCSHP14314 528 aaPredicted RBP13.05□□□□□ -0.32
TOPBP1-209ENST00000513818 PHKG2P15735 406 aa13.05□□□□□ -0.32
TOPBP1-209ENST00000513818 PLEKHO1Q53GL0 409 aaPredicted RBP13.05□□□□□ -0.32
TOPBP1-209ENST00000513818 ADAMTS8Q9UP79 889 aa13.05□□□□□ -0.32
TOPBP1-209ENST00000513818 KDM6AO15550 1401 aaPredicted RBP13.05□□□□□ -0.32
TOPBP1-209ENST00000513818 TRIM37O94972 964 aa13.04□□□□□ -0.32
TOPBP1-209ENST00000513818 DLG5Q8TDM6 1919 aa13.03□□□□□ -0.32
TOPBP1-209ENST00000513818 KCNQ2O43526 872 aa13.03□□□□□ -0.32
TOPBP1-209ENST00000513818 PLEKHF1Q96S99 279 aa13.03□□□□□ -0.32
TOPBP1-209ENST00000513818 BTAF1O14981 1849 aa13.03□□□□□ -0.32
TOPBP1-209ENST00000513818 ITGB4P16144 1822 aa13.03□□□□□ -0.32
TOPBP1-209ENST00000513818 SCN11AQ9UI33 1791 aa13.02□□□□□ -0.32
TOPBP1-209ENST00000513818 CAPN15O75808 1086 aa13.02□□□□□ -0.33
TOPBP1-209ENST00000513818 FCHSD2O94868 740 aa13.02□□□□□ -0.33
TOPBP1-209ENST00000513818 AMOTQ4VCS5 1084 aa13.02□□□□□ -0.33
TOPBP1-209ENST00000513818 MPRIPQ6WCQ1 1025 aa13.02□□□□□ -0.33
TOPBP1-209ENST00000513818 FAM196AQ6ZSG2 479 aa13.02□□□□□ -0.33
TOPBP1-209ENST00000513818 IFNL2Q8IZJ0 200 aa13.02□□□□□ -0.33
TOPBP1-209ENST00000513818 PNISRQ8TF01 805 aaKnown RBP13.02□□□□□ -0.33
TOPBP1-209ENST00000513818 SYTL4Q96C24 671 aaPredicted RBP13.02□□□□□ -0.33
TOPBP1-209ENST00000513818 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.02□□□□□ -0.33
TOPBP1-209ENST00000513818 MAPK8IP3Q9UPT6 1336 aa13.02□□□□□ -0.33
TOPBP1-209ENST00000513818 PLEKHG2Q9H7P9 1386 aa13.02□□□□□ -0.33
TOPBP1-209ENST00000513818 KAT6BQ8WYB5 2073 aa13.01□□□□□ -0.33
TOPBP1-209ENST00000513818 C1orf141Q5JVX7 400 aa13.01□□□□□ -0.33
TOPBP1-209ENST00000513818 FAM9BQ8IZU0 186 aa13.01□□□□□ -0.33
TOPBP1-209ENST00000513818 UPF1Q92900 1129 aaKnown RBP eCLIP13.01□□□□□ -0.33
TOPBP1-209ENST00000513818 RRP7AQ9Y3A4 280 aaKnown RBP13.01□□□□□ -0.33
TOPBP1-209ENST00000513818 MAP3K5Q99683 1374 aa13.01□□□□□ -0.33
TOPBP1-209ENST00000513818 ADAMTS7Q9UKP4 1686 aa13□□□□□ -0.33
TOPBP1-209ENST00000513818 BCL9O00512 1426 aa13□□□□□ -0.33
TOPBP1-209ENST00000513818 GAS2L2Q8NHY3 880 aa13□□□□□ -0.33
TOPBP1-209ENST00000513818 PRIM1P49642 420 aaKnown RBP12.99□□□□□ -0.33
TOPBP1-209ENST00000513818 AKAP4Q5JQC9 854 aa12.99□□□□□ -0.33
TOPBP1-209ENST00000513818 NEFMP07197 916 aa12.98□□□□□ -0.33
TOPBP1-209ENST00000513818 DCTN1Q14203 1278 aa12.98□□□□□ -0.33
TOPBP1-209ENST00000513818 NKX1-1Q15270 411 aaPredicted RBP12.98□□□□□ -0.33
TOPBP1-209ENST00000513818 DEFB132Q7Z7B7 95 aa12.98□□□□□ -0.33
TOPBP1-209ENST00000513818 LGR6Q9HBX8 967 aa12.98□□□□□ -0.33
TOPBP1-209ENST00000513818 TAOK2Q9UL54 1235 aa12.98□□□□□ -0.33
TOPBP1-209ENST00000513818 MRC1P22897 1456 aa12.97□□□□□ -0.33
TOPBP1-209ENST00000513818 CCER2I3L3R5 266 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms