RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-222ENST00000493919 USP35Q9P2H5 1018 aa15.02■□□□□ -0
BRCA1-222ENST00000493919 BRPF3Q9ULD4 1205 aa15.02■□□□□ -0
BRCA1-222ENST00000493919 NOP58Q9Y2X3 529 aaKnown RBP15.02■□□□□ -0
BRCA1-222ENST00000493919 ABCC6O95255 1503 aa15.02□□□□□ -0.01
BRCA1-222ENST00000493919 MAP3K19Q56UN5 1328 aa15.02□□□□□ -0.01
BRCA1-222ENST00000493919 HSP90AA1P07900 732 aaKnown RBP15.02□□□□□ -0.01
BRCA1-222ENST00000493919 MCCP23508 829 aa15.02□□□□□ -0.01
BRCA1-222ENST00000493919 PER1O15534 1290 aaPredicted RBP15.01□□□□□ -0.01
BRCA1-222ENST00000493919 AMPHP49418 695 aa15.01□□□□□ -0.01
BRCA1-222ENST00000493919 MORC1Q86VD1 984 aa15.01□□□□□ -0.01
BRCA1-222ENST00000493919 WWC1Q8IX03 1113 aa15.01□□□□□ -0.01
BRCA1-222ENST00000493919 AXIN2Q9Y2T1 843 aa15.01□□□□□ -0.01
BRCA1-222ENST00000493919 GLI3P10071 1580 aa15.01□□□□□ -0.01
BRCA1-222ENST00000493919 RXRBP28702 533 aa15□□□□□ -0.01
BRCA1-222ENST00000493919 DDX10Q13206 875 aaKnown RBP15□□□□□ -0.01
BRCA1-222ENST00000493919 ZNF592Q92610 1267 aa15□□□□□ -0.01
BRCA1-222ENST00000493919 PLCD4Q9BRC7 762 aa15□□□□□ -0.01
BRCA1-222ENST00000493919 CSB-PGBD3P0DP91 1061 aa15□□□□□ -0.01
BRCA1-222ENST00000493919 RBM6P78332 1123 aaKnown RBP15□□□□□ -0.01
BRCA1-222ENST00000493919 VPS72Q15906 364 aa15□□□□□ -0.01
BRCA1-222ENST00000493919 PEAK1Q9H792 1746 aa14.99□□□□□ -0.01
BRCA1-222ENST00000493919 LARP1Q6PKG0 1096 aaKnown RBP14.99□□□□□ -0.01
BRCA1-222ENST00000493919 GJD4Q96KN9 370 aaPredicted RBP14.99□□□□□ -0.01
BRCA1-222ENST00000493919 EMILIN1Q9Y6C2 1016 aa14.99□□□□□ -0.01
BRCA1-222ENST00000493919 MAP2P11137 1827 aaKnown RBP14.99□□□□□ -0.01
BRCA1-222ENST00000493919 A0A0G2JS52 829 aa14.98□□□□□ -0.01
BRCA1-222ENST00000493919 CLGNO14967 610 aa14.98□□□□□ -0.01
BRCA1-222ENST00000493919 PTMSP20962 102 aa14.98□□□□□ -0.01
BRCA1-222ENST00000493919 ILDR2Q71H61 639 aa14.98□□□□□ -0.01
BRCA1-222ENST00000493919 RTL1A6NKG5 1358 aa14.98□□□□□ -0.01
BRCA1-222ENST00000493919 BLMP54132 1417 aaPredicted RBP14.98□□□□□ -0.01
BRCA1-222ENST00000493919 LTV1Q96GA3 475 aaPredicted RBP14.98□□□□□ -0.01
BRCA1-222ENST00000493919 RGS12O14924 1447 aa14.97□□□□□ -0.01
BRCA1-222ENST00000493919 HOXC9P31274 260 aa14.97□□□□□ -0.01
BRCA1-222ENST00000493919 TOM1L2Q6ZVM7 507 aa14.97□□□□□ -0.01
BRCA1-222ENST00000493919 FLT4P35916 1363 aa14.97□□□□□ -0.01
BRCA1-222ENST00000493919 ERBB3P21860 1342 aa14.96□□□□□ -0.01
BRCA1-222ENST00000493919 WDR17Q8IZU2 1322 aa14.96□□□□□ -0.01
BRCA1-222ENST00000493919 CRB1P82279 1406 aa14.96□□□□□ -0.01
BRCA1-222ENST00000493919 IP6K1Q92551 441 aa14.96□□□□□ -0.01
BRCA1-222ENST00000493919 EP400Q96L91 3159 aa14.96□□□□□ -0.01
BRCA1-222ENST00000493919 SPATA31A5Q5VU36 1347 aa14.96□□□□□ -0.01
BRCA1-222ENST00000493919 SPATA31A7Q8IWB4 1347 aa14.96□□□□□ -0.01
BRCA1-222ENST00000493919 ANKRD24Q8TF21 1146 aa14.96□□□□□ -0.02
BRCA1-222ENST00000493919 PRDM10Q9NQV6 1147 aa14.96□□□□□ -0.02
BRCA1-222ENST00000493919 SPATA31A1Q5TZJ5 1347 aa14.95□□□□□ -0.02
BRCA1-222ENST00000493919 FAM98CQ17RN3 349 aaKnown RBP14.95□□□□□ -0.02
BRCA1-222ENST00000493919 ANP32BQ92688 251 aaKnown RBP14.95□□□□□ -0.02
BRCA1-222ENST00000493919 PSMD1Q99460 953 aa14.95□□□□□ -0.02
BRCA1-222ENST00000493919 NPC1L1Q9UHC9 1359 aa14.95□□□□□ -0.02
BRCA1-222ENST00000493919 SMG6Q86US8 1419 aaKnown RBP14.95□□□□□ -0.02
BRCA1-222ENST00000493919 FAM208AQ9UK61 1670 aaKnown RBP14.94□□□□□ -0.02
BRCA1-222ENST00000493919 HSP90AB2PQ58FF8 381 aa14.94□□□□□ -0.02
BRCA1-222ENST00000493919 NLRP2Q9NX02 1062 aa14.94□□□□□ -0.02
BRCA1-222ENST00000493919 POLKQ9UBT6 870 aa14.94□□□□□ -0.02
BRCA1-222ENST00000493919 CDK12Q9NYV4 1490 aaPredicted RBP14.93□□□□□ -0.02
BRCA1-222ENST00000493919 KIF24Q5T7B8 1368 aa14.93□□□□□ -0.02
BRCA1-222ENST00000493919 SETQ01105 290 aaPredicted RBP14.93□□□□□ -0.02
BRCA1-222ENST00000493919 NBR1Q14596 966 aa14.93□□□□□ -0.02
BRCA1-222ENST00000493919 KCNG1Q9UIX4 513 aa14.93□□□□□ -0.02
BRCA1-222ENST00000493919 MIER1Q8N108 512 aa14.92□□□□□ -0.02
BRCA1-222ENST00000493919 RGPD2P0DJD1 1756 aa14.92□□□□□ -0.02
BRCA1-222ENST00000493919 TCP11L2Q8N4U5 519 aa14.92□□□□□ -0.02
BRCA1-222ENST00000493919 WNK3Q9BYP7 1800 aa14.91□□□□□ -0.02
BRCA1-222ENST00000493919 INSRP06213 1382 aa14.91□□□□□ -0.02
BRCA1-222ENST00000493919 THSD7AQ9UPZ6 1657 aa14.9□□□□□ -0.02
BRCA1-222ENST00000493919 CFAP44Q96MT7 982 aa14.9□□□□□ -0.02
BRCA1-222ENST00000493919 MMP14P50281 582 aa14.9□□□□□ -0.02
BRCA1-222ENST00000493919 SEPT12Q8IYM1 358 aa14.9□□□□□ -0.02
BRCA1-222ENST00000493919 RGS22Q8NE09 1264 aa14.9□□□□□ -0.02
BRCA1-222ENST00000493919 BRWD3Q6RI45 1802 aa14.89□□□□□ -0.03
BRCA1-222ENST00000493919 FAM193AP78312 1265 aa14.89□□□□□ -0.03
BRCA1-222ENST00000493919 ZNF622Q969S3 477 aaKnown RBP eCLIP14.89□□□□□ -0.035e-8■■■□□ 17.3
BRCA1-222ENST00000493919 CARD10Q9BWT7 1032 aa14.89□□□□□ -0.03
BRCA1-222ENST00000493919 RGS3P49796 1198 aa14.88□□□□□ -0.03
BRCA1-222ENST00000493919 THRAP3Q9Y2W1 955 aaKnown RBP14.88□□□□□ -0.03
BRCA1-222ENST00000493919 MTHFSP49914 203 aa14.88□□□□□ -0.03
BRCA1-222ENST00000493919 AXDND1Q5T1B0 1012 aaPredicted RBP14.88□□□□□ -0.03
BRCA1-222ENST00000493919 USHBP1Q8N6Y0 703 aa14.88□□□□□ -0.03
BRCA1-222ENST00000493919 LRRC37A3O60309 1634 aa14.87□□□□□ -0.03
BRCA1-222ENST00000493919 BARGINQ6ZT62 677 aa14.87□□□□□ -0.03
BRCA1-222ENST00000493919 PDCL3Q9H2J4 239 aa14.86□□□□□ -0.03
BRCA1-222ENST00000493919 PARP4Q9UKK3 1724 aaKnown RBP14.86□□□□□ -0.03
BRCA1-222ENST00000493919 PARD3Q8TEW0 1356 aa14.86□□□□□ -0.03
BRCA1-222ENST00000493919 EIF4A2Q14240 407 aaKnown RBP14.86□□□□□ -0.03
BRCA1-222ENST00000493919 NBPF6Q5VWK0 638 aa14.86□□□□□ -0.03
BRCA1-222ENST00000493919 NBPF4Q96M43 638 aa14.86□□□□□ -0.03
BRCA1-222ENST00000493919 DISP2A7MBM2 1401 aa14.85□□□□□ -0.03
BRCA1-222ENST00000493919 ONECUT3O60422 494 aaPredicted RBP14.84□□□□□ -0.03
BRCA1-222ENST00000493919 PHF14O94880 888 aa14.84□□□□□ -0.03
BRCA1-222ENST00000493919 PPP2R1AP30153 589 aa14.84□□□□□ -0.03
BRCA1-222ENST00000493919 IL2RBP14784 551 aa14.83□□□□□ -0.04
BRCA1-222ENST00000493919 KRT27Q7Z3Y8 459 aa14.83□□□□□ -0.04
BRCA1-222ENST00000493919 MEGF6O75095 1541 aa14.82□□□□□ -0.04
BRCA1-222ENST00000493919 DDB1Q16531 1140 aa14.82□□□□□ -0.04
BRCA1-222ENST00000493919 TMED8Q6PL24 325 aaPredicted RBP14.82□□□□□ -0.04
BRCA1-222ENST00000493919 PDE3BQ13370 1112 aa14.82□□□□□ -0.04
BRCA1-222ENST00000493919 FAM182BQ5T319 152 aa14.82□□□□□ -0.04
BRCA1-222ENST00000493919 EYA1Q99502 592 aa14.82□□□□□ -0.04
BRCA1-222ENST00000493919 CDCA7Q9BWT1 371 aaPredicted RBP14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms