RNA–Protein interactions for RNA: ENST00000477461.1

UBR3-209, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 4

Gene UBR3, Length 595 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-209ENST00000477461 LYSMD3Q7Z3D4 306 aa9.44□□□□□ -0.9
UBR3-209ENST00000477461 ITGA6P23229 1130 aa9.43□□□□□ -0.9
UBR3-209ENST00000477461 ESF1Q9H501 851 aaKnown RBP9.43□□□□□ -0.9
UBR3-209ENST00000477461 SENP3-EIF4A1A0A087X0R7 540 aa9.42□□□□□ -0.9
UBR3-209ENST00000477461 FAM181BA6NEQ2 426 aa9.42□□□□□ -0.9
UBR3-209ENST00000477461 MCCD1P59942 119 aaPredicted RBP9.42□□□□□ -0.9
UBR3-209ENST00000477461 ERVK-9P63128 1117 aa9.42□□□□□ -0.9
UBR3-209ENST00000477461 KRT76Q01546 638 aa9.42□□□□□ -0.9
UBR3-209ENST00000477461 TSGA10IPQ3SY00 556 aa9.42□□□□□ -0.9
UBR3-209ENST00000477461 CDCA7Q9BWT1 371 aaPredicted RBP9.42□□□□□ -0.9
UBR3-209ENST00000477461 COL25A1Q9BXS0 654 aaPredicted RBP9.42□□□□□ -0.9
UBR3-209ENST00000477461 CEP126Q9P2H0 1117 aa9.42□□□□□ -0.9
UBR3-209ENST00000477461 GDPD2Q9HCC8 539 aa9.41□□□□□ -0.9
UBR3-209ENST00000477461 SOCS7O14512 581 aa9.4□□□□□ -0.9
UBR3-209ENST00000477461 RNF144AP50876 292 aaPredicted RBP9.4□□□□□ -0.9
UBR3-209ENST00000477461 TRIM52Q96A61 297 aa9.4□□□□□ -0.9
UBR3-209ENST00000477461 NLRP3Q96P20 1036 aa9.4□□□□□ -0.9
UBR3-209ENST00000477461 OSBPL3Q9H4L5 887 aa9.4□□□□□ -0.9
UBR3-209ENST00000477461 RAB6BQ9NRW1 208 aa9.4□□□□□ -0.9
UBR3-209ENST00000477461 ABL2P42684 1182 aa9.39□□□□□ -0.91
UBR3-209ENST00000477461 VAC14Q08AM6 782 aa9.39□□□□□ -0.91
UBR3-209ENST00000477461 POU4F2Q12837 409 aa9.39□□□□□ -0.91
UBR3-209ENST00000477461 IRF5Q13568 498 aa9.39□□□□□ -0.91
UBR3-209ENST00000477461 SLC27A3Q5K4L6 730 aa9.39□□□□□ -0.91
UBR3-209ENST00000477461 RNFT1Q5M7Z0 435 aa9.39□□□□□ -0.91
UBR3-209ENST00000477461 SV2AQ7L0J3 742 aa9.39□□□□□ -0.91
UBR3-209ENST00000477461 CCDC85AQ96PX6 553 aaPredicted RBP9.39□□□□□ -0.91
UBR3-209ENST00000477461 ARHGEF10LQ9HCE6 1279 aa9.39□□□□□ -0.91
UBR3-209ENST00000477461 PRM3Q9NNZ6 103 aa9.39□□□□□ -0.91
UBR3-209ENST00000477461 CUEDC1Q9NWM3 386 aaPredicted RBP9.39□□□□□ -0.91
UBR3-209ENST00000477461 NANOS1Q8WY41 292 aaKnown RBP9.38□□□□□ -0.91
UBR3-209ENST00000477461 ZNF592Q92610 1267 aa9.38□□□□□ -0.91
UBR3-209ENST00000477461 CYP2U1Q7Z449 544 aa9.37□□□□□ -0.91
UBR3-209ENST00000477461 CCDC125Q86Z20 511 aa9.37□□□□□ -0.91
UBR3-209ENST00000477461 EIF4G2P78344 907 aaKnown RBP eCLIP9.36□□□□□ -0.91
UBR3-209ENST00000477461 RIPOR1Q6ZS17 1223 aa9.36□□□□□ -0.91
UBR3-209ENST00000477461 GAS2L1Q99501 681 aaPredicted RBP9.36□□□□□ -0.91
UBR3-209ENST00000477461 TRAK2O60296 914 aa9.35□□□□□ -0.91
UBR3-209ENST00000477461 STAU1O95793 577 aaKnown RBP9.34□□□□□ -0.91
UBR3-209ENST00000477461 MYCP01106 439 aaPredicted RBP9.34□□□□□ -0.91
UBR3-209ENST00000477461 CLN3Q13286 438 aa9.34□□□□□ -0.91
UBR3-209ENST00000477461 SLFNL1Q499Z3 407 aa9.34□□□□□ -0.91
UBR3-209ENST00000477461 GRIP2Q9C0E4 1043 aa9.33□□□□□ -0.92
UBR3-209ENST00000477461 GPR25O00155 361 aa9.32□□□□□ -0.92
UBR3-209ENST00000477461 GPC1P35052 558 aa9.32□□□□□ -0.92
UBR3-209ENST00000477461 DBN1Q16643 649 aa9.32□□□□□ -0.92
UBR3-209ENST00000477461 OXLD1Q5BKU9 147 aa9.32□□□□□ -0.92
UBR3-209ENST00000477461 RNF135Q8IUD6 432 aa9.32□□□□□ -0.92
UBR3-209ENST00000477461 PHTF2Q8N3S3 785 aa9.32□□□□□ -0.92
UBR3-209ENST00000477461 CNKSR1Q969H4 720 aa9.32□□□□□ -0.92
UBR3-209ENST00000477461 IL2RAP01589 272 aa9.31□□□□□ -0.92
UBR3-209ENST00000477461 PHKA2P46019 1235 aa9.31□□□□□ -0.92
UBR3-209ENST00000477461 CENPCQ03188 943 aa9.31□□□□□ -0.92
UBR3-209ENST00000477461 NBPF10Q6P3W6 841 aaKnown RBP9.31□□□□□ -0.92
UBR3-209ENST00000477461 NBPF15Q8N660 670 aa9.31□□□□□ -0.92
UBR3-209ENST00000477461 WHAMMQ8TF30 809 aa9.31□□□□□ -0.92
UBR3-209ENST00000477461 DOLKQ9UPQ8 538 aa9.31□□□□□ -0.92
UBR3-209ENST00000477461 GNRH1P01148 92 aa9.3□□□□□ -0.92
UBR3-209ENST00000477461 MCM6Q14566 821 aa9.3□□□□□ -0.92
UBR3-209ENST00000477461 SVOPQ8N4V2 548 aa9.29□□□□□ -0.92
UBR3-209ENST00000477461 ESYT1Q9BSJ8 1104 aa9.29□□□□□ -0.92
UBR3-209ENST00000477461 TIMMDC1Q9NPL8 285 aa9.29□□□□□ -0.92
UBR3-209ENST00000477461 USP4Q13107 963 aa9.28□□□□□ -0.92
UBR3-209ENST00000477461 SEMA3FQ13275 785 aa9.28□□□□□ -0.92
UBR3-209ENST00000477461 GTPBP3Q969Y2 492 aaKnown RBP9.28□□□□□ -0.92
UBR3-209ENST00000477461 ZNF837Q96EG3 531 aaPredicted RBP9.28□□□□□ -0.92
UBR3-209ENST00000477461 DYRK1BQ9Y463 629 aa9.28□□□□□ -0.92
UBR3-209ENST00000477461 WASLO00401 505 aaPredicted RBP9.27□□□□□ -0.93
UBR3-209ENST00000477461 GAS6Q14393 721 aa9.27□□□□□ -0.93
UBR3-209ENST00000477461 ZNF385CQ66K41 422 aaPredicted RBP9.27□□□□□ -0.93
UBR3-209ENST00000477461 TAS1R3Q7RTX0 852 aa9.27□□□□□ -0.93
UBR3-209ENST00000477461 TRIM22Q8IYM9 498 aa9.27□□□□□ -0.93
UBR3-209ENST00000477461 ZSCAN10Q96SZ4 725 aaPredicted RBP9.27□□□□□ -0.93
UBR3-209ENST00000477461 ADAMTS8Q9UP79 889 aa9.27□□□□□ -0.93
UBR3-209ENST00000477461 ADAMTS2O95450 1211 aa9.26□□□□□ -0.93
UBR3-209ENST00000477461 WASHC4Q2M389 1173 aa9.26□□□□□ -0.93
UBR3-209ENST00000477461 TMEM214Q6NUQ4 689 aaKnown RBP9.26□□□□□ -0.93
UBR3-209ENST00000477461 XAGE2Q96GT9 111 aa9.26□□□□□ -0.93
UBR3-209ENST00000477461 GPAMQ9HCL2 828 aa9.26□□□□□ -0.93
UBR3-209ENST00000477461 COG6Q9Y2V7 657 aa9.26□□□□□ -0.93
UBR3-209ENST00000477461 SPATA31C2B4DYI2 1134 aa9.25□□□□□ -0.93
UBR3-209ENST00000477461 POM121Q96HA1 1249 aa9.25□□□□□ -0.93
UBR3-209ENST00000477461 ETNK1Q9HBU6 452 aa9.25□□□□□ -0.93
UBR3-209ENST00000477461 SLURP2P0DP57 97 aa9.24□□□□□ -0.93
UBR3-209ENST00000477461 FOXR1Q6PIV2 292 aa9.24□□□□□ -0.93
UBR3-209ENST00000477461 H7C1W4 665 aa9.23□□□□□ -0.93
UBR3-209ENST00000477461 PIK3CDO00329 1044 aa9.23□□□□□ -0.93
UBR3-209ENST00000477461 F11P03951 625 aa9.23□□□□□ -0.93
UBR3-209ENST00000477461 LYPD4Q6UWN0 246 aa9.23□□□□□ -0.93
UBR3-209ENST00000477461 PLPP7Q8NBV4 271 aa9.23□□□□□ -0.93
UBR3-209ENST00000477461 HRH3Q9Y5N1 445 aa9.23□□□□□ -0.93
UBR3-209ENST00000477461 GTF2E1P29083 439 aaPredicted RBP9.22□□□□□ -0.93
UBR3-209ENST00000477461 ESCO1Q5FWF5 840 aa9.22□□□□□ -0.93
UBR3-209ENST00000477461 FHDC1Q9C0D6 1143 aaPredicted RBP9.22□□□□□ -0.93
UBR3-209ENST00000477461 SRSF11Q05519 484 aaKnown RBP9.21□□□□□ -0.94
UBR3-209ENST00000477461 C4orf17Q53FE4 359 aa9.21□□□□□ -0.94
UBR3-209ENST00000477461 WDR44Q5JSH3 913 aa9.21□□□□□ -0.94
UBR3-209ENST00000477461 GNASQ5JWF2 1037 aa9.21□□□□□ -0.94
UBR3-209ENST00000477461 SIRT1Q96EB6 747 aa9.21□□□□□ -0.94
UBR3-209ENST00000477461 GMCL1Q96IK5 515 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms