RNA–Protein interactions for RNA: ENST00000461798.5

BRCA1-207, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 3

Gene BRCA1, Length 582 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-207ENST00000461798 GGNBP2Q9H3C7 697 aa12.75□□□□□ -0.37
BRCA1-207ENST00000461798 RTL1A6NKG5 1358 aa12.74□□□□□ -0.37
BRCA1-207ENST00000461798 WNK3Q9BYP7 1800 aa12.74□□□□□ -0.37
BRCA1-207ENST00000461798 RREB1Q92766 1687 aa12.73□□□□□ -0.37
BRCA1-207ENST00000461798 KIF24Q5T7B8 1368 aa12.73□□□□□ -0.37
BRCA1-207ENST00000461798 KCNQ2O43526 872 aa12.73□□□□□ -0.37
BRCA1-207ENST00000461798 LTV1Q96GA3 475 aaPredicted RBP12.73□□□□□ -0.37
BRCA1-207ENST00000461798 LTN1O94822 1766 aa12.73□□□□□ -0.37
BRCA1-207ENST00000461798 SBF2Q86WG5 1849 aa12.72□□□□□ -0.37
BRCA1-207ENST00000461798 RRS1Q15050 365 aaKnown RBP12.72□□□□□ -0.37
BRCA1-207ENST00000461798 CCER1Q8TC90 406 aaPredicted RBP12.72□□□□□ -0.37
BRCA1-207ENST00000461798 EIF4G2P78344 907 aaKnown RBP eCLIP12.71□□□□□ -0.37
BRCA1-207ENST00000461798 TXNRD1Q16881 649 aa12.71□□□□□ -0.37
BRCA1-207ENST00000461798 RGPD3A6NKT7 1758 aaPredicted RBP12.71□□□□□ -0.38
BRCA1-207ENST00000461798 RGPD4Q7Z3J3 1758 aa12.71□□□□□ -0.38
BRCA1-207ENST00000461798 NUP188Q5SRE5 1749 aa12.71□□□□□ -0.38
BRCA1-207ENST00000461798 INSRP06213 1382 aa12.7□□□□□ -0.38
BRCA1-207ENST00000461798 C19orf67A6NJJ6 358 aa12.7□□□□□ -0.38
BRCA1-207ENST00000461798 NBPF6Q5VWK0 638 aa12.7□□□□□ -0.38
BRCA1-207ENST00000461798 NBPF4Q96M43 638 aa12.7□□□□□ -0.38
BRCA1-207ENST00000461798 CGNL1Q0VF96 1302 aa12.69□□□□□ -0.38
BRCA1-207ENST00000461798 HSP90AB2PQ58FF8 381 aa12.69□□□□□ -0.38
BRCA1-207ENST00000461798 ZCRB1Q8TBF4 217 aaKnown RBP12.69□□□□□ -0.38
BRCA1-207ENST00000461798 ACSBG1Q96GR2 724 aa12.69□□□□□ -0.38
BRCA1-207ENST00000461798 ANO8Q9HCE9 1232 aaPredicted RBP12.69□□□□□ -0.38
BRCA1-207ENST00000461798 NSD3Q9BZ95 1437 aa12.69□□□□□ -0.38
BRCA1-207ENST00000461798 GABBR2O75899 941 aa12.68□□□□□ -0.38
BRCA1-207ENST00000461798 HSPA5P11021 654 aaKnown RBP12.68□□□□□ -0.38
BRCA1-207ENST00000461798 PRKAR2AP13861 404 aaKnown RBP12.68□□□□□ -0.38
BRCA1-207ENST00000461798 DDX54Q8TDD1 881 aaKnown RBP12.68□□□□□ -0.38
BRCA1-207ENST00000461798 FLT4P35916 1363 aa12.68□□□□□ -0.38
BRCA1-207ENST00000461798 FAM208AQ9UK61 1670 aaKnown RBP12.67□□□□□ -0.38
BRCA1-207ENST00000461798 SLC15A2Q16348 729 aa12.67□□□□□ -0.38
BRCA1-207ENST00000461798 SPON1Q9HCB6 807 aa12.67□□□□□ -0.38
BRCA1-207ENST00000461798 STK32BQ9NY57 414 aa12.66□□□□□ -0.38
BRCA1-207ENST00000461798 WASHC2AQ641Q2 1341 aa12.65□□□□□ -0.38
BRCA1-207ENST00000461798 SMG6Q86US8 1419 aaKnown RBP12.65□□□□□ -0.38
BRCA1-207ENST00000461798 MYOM1P52179 1685 aa12.65□□□□□ -0.38
BRCA1-207ENST00000461798 NHSQ6T4R5 1651 aa12.65□□□□□ -0.38
BRCA1-207ENST00000461798 RAPGEF4Q8WZA2 1011 aa12.65□□□□□ -0.38
BRCA1-207ENST00000461798 EMILIN1Q9Y6C2 1016 aa12.65□□□□□ -0.38
BRCA1-207ENST00000461798 MEGF6O75095 1541 aa12.65□□□□□ -0.38
BRCA1-207ENST00000461798 TATP17735 454 aaPredicted RBP12.64□□□□□ -0.39
BRCA1-207ENST00000461798 PRIM1P49642 420 aaKnown RBP12.64□□□□□ -0.39
BRCA1-207ENST00000461798 SLC27A3Q5K4L6 730 aa12.64□□□□□ -0.39
BRCA1-207ENST00000461798 POLKQ9UBT6 870 aa12.64□□□□□ -0.39
BRCA1-207ENST00000461798 USHBP1Q8N6Y0 703 aa12.63□□□□□ -0.39
BRCA1-207ENST00000461798 PDGFDQ9GZP0 370 aaPredicted RBP12.63□□□□□ -0.39
BRCA1-207ENST00000461798 PANK3Q9H999 370 aa12.63□□□□□ -0.39
BRCA1-207ENST00000461798 LRRC4BQ9NT99 713 aa12.63□□□□□ -0.39
BRCA1-207ENST00000461798 NCAPD2Q15021 1401 aa12.62□□□□□ -0.39
BRCA1-207ENST00000461798 POLR3GLQ9BT43 218 aa12.62□□□□□ -0.39
BRCA1-207ENST00000461798 NSD2O96028 1365 aa12.61□□□□□ -0.39
BRCA1-207ENST00000461798 KIF20BQ96Q89 1820 aa12.61□□□□□ -0.39
BRCA1-207ENST00000461798 PPM1GO15355 546 aaPredicted RBP12.6□□□□□ -0.39
BRCA1-207ENST00000461798 CYP27B1O15528 508 aa12.6□□□□□ -0.39
BRCA1-207ENST00000461798 PTGER2P43116 358 aa12.6□□□□□ -0.39
BRCA1-207ENST00000461798 EYA1Q99502 592 aa12.6□□□□□ -0.39
BRCA1-207ENST00000461798 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.6□□□□□ -0.394e-6■■■■■ 27.4
BRCA1-207ENST00000461798 PCDH11XQ9BZA7 1347 aa12.6□□□□□ -0.39
BRCA1-207ENST00000461798 PCDH11YQ9BZA8 1340 aa12.6□□□□□ -0.39
BRCA1-207ENST00000461798 CASZ1Q86V15 1759 aa12.59□□□□□ -0.39
BRCA1-207ENST00000461798 ZBTB7AO95365 584 aa12.59□□□□□ -0.39
BRCA1-207ENST00000461798 NKX1-1Q15270 411 aaPredicted RBP12.59□□□□□ -0.39
BRCA1-207ENST00000461798 SYTL4Q96C24 671 aaPredicted RBP12.59□□□□□ -0.39
BRCA1-207ENST00000461798 MTFR1LQ9H019 292 aa12.59□□□□□ -0.39
BRCA1-207ENST00000461798 PPP1R1BQ9UD71 204 aaPredicted RBP12.59□□□□□ -0.39
BRCA1-207ENST00000461798 BTAF1O14981 1849 aa12.59□□□□□ -0.39
BRCA1-207ENST00000461798 RGPD2P0DJD1 1756 aa12.58□□□□□ -0.39
BRCA1-207ENST00000461798 ZNF827Q17R98 1081 aa12.58□□□□□ -0.4
BRCA1-207ENST00000461798 SGIP1Q9BQI5 828 aa12.58□□□□□ -0.4
BRCA1-207ENST00000461798 HMGB2P26583 209 aaKnown RBP12.57□□□□□ -0.4
BRCA1-207ENST00000461798 EIF4A2Q14240 407 aaKnown RBP12.57□□□□□ -0.4
BRCA1-207ENST00000461798 SLC16A10Q8TF71 515 aa12.57□□□□□ -0.4
BRCA1-207ENST00000461798 PLSCR2Q9NRY7 297 aa12.57□□□□□ -0.4
BRCA1-207ENST00000461798 SPG7Q9UQ90 795 aa12.57□□□□□ -0.4
BRCA1-207ENST00000461798 PAPPAQ13219 1627 aa12.57□□□□□ -0.4
BRCA1-207ENST00000461798 SHANK3Q9BYB0 1731 aa12.57□□□□□ -0.4
BRCA1-207ENST00000461798 PLEKHG2Q9H7P9 1386 aa12.56□□□□□ -0.4
BRCA1-207ENST00000461798 SPDYE2BA6NHP3 402 aa12.56□□□□□ -0.4
BRCA1-207ENST00000461798 SPDYE6P0CI01 402 aa12.56□□□□□ -0.4
BRCA1-207ENST00000461798 SPDYE2Q495Y8 402 aa12.56□□□□□ -0.4
BRCA1-207ENST00000461798 FOXD4L1Q9NU39 408 aa12.56□□□□□ -0.4
BRCA1-207ENST00000461798 KNSTRNQ9Y448 316 aa12.56□□□□□ -0.4
BRCA1-207ENST00000461798 ANKRD26Q9UPS8 1709 aa12.56□□□□□ -0.4
BRCA1-207ENST00000461798 KAT6BQ8WYB5 2073 aa12.55□□□□□ -0.4
BRCA1-207ENST00000461798 TNNT2P45379 298 aaPredicted RBP12.55□□□□□ -0.4
BRCA1-207ENST00000461798 MORC1Q86VD1 984 aa12.55□□□□□ -0.4
BRCA1-207ENST00000461798 CCNL1Q9UK58 526 aaPredicted RBP12.55□□□□□ -0.4
BRCA1-207ENST00000461798 KCNQ4P56696 695 aa12.54□□□□□ -0.4
BRCA1-207ENST00000461798 AMER1Q5JTC6 1135 aaPredicted RBP12.54□□□□□ -0.4
BRCA1-207ENST00000461798 SMARCC1Q92922 1105 aaPredicted RBP12.54□□□□□ -0.4
BRCA1-207ENST00000461798 KIF7Q2M1P5 1343 aa12.54□□□□□ -0.4
BRCA1-207ENST00000461798 PNPLA7Q6ZV29 1317 aa12.54□□□□□ -0.4
BRCA1-207ENST00000461798 IGSF1Q8N6C5 1336 aa12.54□□□□□ -0.4
BRCA1-207ENST00000461798 PER1O15534 1290 aaPredicted RBP12.53□□□□□ -0.4
BRCA1-207ENST00000461798 MPRIPQ6WCQ1 1025 aa12.53□□□□□ -0.4
BRCA1-207ENST00000461798 IFNL2Q8IZJ0 200 aa12.53□□□□□ -0.4
BRCA1-207ENST00000461798 TFCP2L1Q9NZI6 479 aa12.53□□□□□ -0.4
BRCA1-207ENST00000461798 MAP2P11137 1827 aaKnown RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms