RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 TRIM35Q9UPQ4 493 aa18.75■□□□□ 0.59
SF3B1-204ENST00000414963 RRP7AQ9Y3A4 280 aaKnown RBP18.75■□□□□ 0.59
SF3B1-204ENST00000414963 WWC1Q8IX03 1113 aa18.74■□□□□ 0.59
SF3B1-204ENST00000414963 USP21Q9UK80 565 aa18.74■□□□□ 0.59
SF3B1-204ENST00000414963 HTATSF1O43719 755 aaKnown RBP18.73■□□□□ 0.59
SF3B1-204ENST00000414963 IL2RBP14784 551 aa18.73■□□□□ 0.59
SF3B1-204ENST00000414963 LMOD3Q0VAK6 560 aa18.73■□□□□ 0.59
SF3B1-204ENST00000414963 PDE3BQ13370 1112 aa18.73■□□□□ 0.59
SF3B1-204ENST00000414963 MEGF6O75095 1541 aa18.73■□□□□ 0.59
SF3B1-204ENST00000414963 OVOS2A0A0G2JMS6 1433 aa18.73■□□□□ 0.59
SF3B1-204ENST00000414963 SENP3-EIF4A1A0A087X0R7 540 aa18.72■□□□□ 0.59
SF3B1-204ENST00000414963 NEUROD2Q15784 382 aa18.72■□□□□ 0.59
SF3B1-204ENST00000414963 BARGINQ6ZT62 677 aa18.72■□□□□ 0.59
SF3B1-204ENST00000414963 WDR63Q8IWG1 891 aa18.72■□□□□ 0.59
SF3B1-204ENST00000414963 CDCA7Q9BWT1 371 aaPredicted RBP18.72■□□□□ 0.59
SF3B1-204ENST00000414963 SPG7Q9UQ90 795 aa18.72■□□□□ 0.59
SF3B1-204ENST00000414963 SALL2Q9Y467 1007 aaPredicted RBP18.72■□□□□ 0.59
SF3B1-204ENST00000414963 DISP2A7MBM2 1401 aa18.72■□□□□ 0.59
SF3B1-204ENST00000414963 AFF2P51816 1311 aa18.72■□□□□ 0.59
SF3B1-204ENST00000414963 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.71■□□□□ 0.59
SF3B1-204ENST00000414963 GNAT3A8MTJ3 354 aa18.69■□□□□ 0.58
SF3B1-204ENST00000414963 AKAP4Q5JQC9 854 aa18.69■□□□□ 0.58
SF3B1-204ENST00000414963 ZCRB1Q8TBF4 217 aaKnown RBP18.69■□□□□ 0.58
SF3B1-204ENST00000414963 USP35Q9P2H5 1018 aa18.69■□□□□ 0.58
SF3B1-204ENST00000414963 IL16Q14005 1332 aa18.69■□□□□ 0.58
SF3B1-204ENST00000414963 ATRNO75882 1429 aa18.68■□□□□ 0.58
SF3B1-204ENST00000414963 GOLGA2Q08379 1002 aa18.68■□□□□ 0.58
SF3B1-204ENST00000414963 ZNF530Q6P9A1 599 aaPredicted RBP18.68■□□□□ 0.58
SF3B1-204ENST00000414963 MAP3K5Q99683 1374 aa18.68■□□□□ 0.58
SF3B1-204ENST00000414963 PARP4Q9UKK3 1724 aaKnown RBP18.67■□□□□ 0.58
SF3B1-204ENST00000414963 CALD1Q05682 793 aaKnown RBP18.67■□□□□ 0.58
SF3B1-204ENST00000414963 TRPC5Q9UL62 973 aaPredicted RBP18.67■□□□□ 0.58
SF3B1-204ENST00000414963 PKD1L3Q7Z443 1732 aa18.66■□□□□ 0.58
SF3B1-204ENST00000414963 C1orf141Q5JVX7 400 aa18.66■□□□□ 0.58
SF3B1-204ENST00000414963 CCDC9Q9Y3X0 531 aaKnown RBP18.66■□□□□ 0.58
SF3B1-204ENST00000414963 PHKG2P15735 406 aa18.65■□□□□ 0.58
SF3B1-204ENST00000414963 SLFN5Q08AF3 891 aa18.65■□□□□ 0.58
SF3B1-204ENST00000414963 TRMT2AQ8IZ69 625 aaKnown RBP18.65■□□□□ 0.58
SF3B1-204ENST00000414963 IFNL2Q8IZJ0 200 aa18.65■□□□□ 0.58
SF3B1-204ENST00000414963 RTF1Q92541 710 aaKnown RBP18.65■□□□□ 0.58
SF3B1-204ENST00000414963 GJD4Q96KN9 370 aaPredicted RBP18.65■□□□□ 0.58
SF3B1-204ENST00000414963 E9PSI1 815 aa18.64■□□□□ 0.57
SF3B1-204ENST00000414963 CYP27B1O15528 508 aa18.64■□□□□ 0.57
SF3B1-204ENST00000414963 ONECUT3O60422 494 aaPredicted RBP18.64■□□□□ 0.57
SF3B1-204ENST00000414963 IL17REQ8NFR9 667 aa18.64■□□□□ 0.57
SF3B1-204ENST00000414963 PCDH11XQ9BZA7 1347 aa18.64■□□□□ 0.57
SF3B1-204ENST00000414963 PCDH11YQ9BZA8 1340 aa18.64■□□□□ 0.57
SF3B1-204ENST00000414963 HSP90AB1P08238 724 aaKnown RBP18.63■□□□□ 0.57
SF3B1-204ENST00000414963 NKX1-1Q15270 411 aaPredicted RBP18.63■□□□□ 0.57
SF3B1-204ENST00000414963 ZNF772Q68DY9 489 aaPredicted RBP18.63■□□□□ 0.57
SF3B1-204ENST00000414963 CDCA7LQ96GN5 454 aa18.63■□□□□ 0.57
SF3B1-204ENST00000414963 QTRT2Q9H974 415 aaKnown RBP18.63■□□□□ 0.57
SF3B1-204ENST00000414963 CEMIPQ8WUJ3 1361 aa18.63■□□□□ 0.57
SF3B1-204ENST00000414963 DLG5Q8TDM6 1919 aa18.62■□□□□ 0.57
SF3B1-204ENST00000414963 EXOC5O00471 708 aa18.62■□□□□ 0.57
SF3B1-204ENST00000414963 CENPBP07199 599 aaPredicted RBP18.62■□□□□ 0.57
SF3B1-204ENST00000414963 DCTN1Q14203 1278 aa18.62■□□□□ 0.57
SF3B1-204ENST00000414963 MCM10Q7L590 875 aa18.62■□□□□ 0.57
SF3B1-204ENST00000414963 ZNF853P0CG23 659 aa18.61■□□□□ 0.57
SF3B1-204ENST00000414963 DCAF5Q96JK2 942 aa18.61■□□□□ 0.57
SF3B1-204ENST00000414963 THUMPD2Q9BTF0 503 aaKnown RBP18.61■□□□□ 0.57
SF3B1-204ENST00000414963 SPINK5Q9NQ38 1064 aaPredicted RBP18.61■□□□□ 0.57
SF3B1-204ENST00000414963 IFT57Q9NWB7 429 aa18.61■□□□□ 0.57
SF3B1-204ENST00000414963 WNK3Q9BYP7 1800 aa18.6■□□□□ 0.57
SF3B1-204ENST00000414963 TNS2Q63HR2 1409 aa18.6■□□□□ 0.57
SF3B1-204ENST00000414963 RNMTO43148 476 aaKnown RBP18.6■□□□□ 0.57
SF3B1-204ENST00000414963 FAM98CQ17RN3 349 aaKnown RBP18.6■□□□□ 0.57
SF3B1-204ENST00000414963 MYH16Q9H6N6 1097 aa18.6■□□□□ 0.57
SF3B1-204ENST00000414963 ADAMTS7Q9UKP4 1686 aa18.6■□□□□ 0.57
SF3B1-204ENST00000414963 DDB1Q16531 1140 aa18.59■□□□□ 0.57
SF3B1-204ENST00000414963 DUSP27Q5VZP5 1158 aa18.59■□□□□ 0.57
SF3B1-204ENST00000414963 MPRIPQ6WCQ1 1025 aa18.59■□□□□ 0.57
SF3B1-204ENST00000414963 CFAP44Q96MT7 982 aa18.59■□□□□ 0.57
SF3B1-204ENST00000414963 LGR6Q9HBX8 967 aa18.59■□□□□ 0.57
SF3B1-204ENST00000414963 BABAM1Q9NWV8 329 aa18.59■□□□□ 0.57
SF3B1-204ENST00000414963 GLI3P10071 1580 aa18.59■□□□□ 0.57
SF3B1-204ENST00000414963 CHL1O00533 1208 aa18.58■□□□□ 0.56
SF3B1-204ENST00000414963 GNAI1P63096 354 aa18.58■□□□□ 0.56
SF3B1-204ENST00000414963 DDX54Q8TDD1 881 aaKnown RBP18.57■□□□□ 0.56
SF3B1-204ENST00000414963 SHANK3Q9BYB0 1731 aa18.57■□□□□ 0.56
SF3B1-204ENST00000414963 KDM6AO15550 1401 aaPredicted RBP18.57■□□□□ 0.56
SF3B1-204ENST00000414963 LRRC37A3O60309 1634 aa18.56■□□□□ 0.56
SF3B1-204ENST00000414963 TAF7Q15545 349 aaPredicted RBP18.56■□□□□ 0.56
SF3B1-204ENST00000414963 THSD7AQ9UPZ6 1657 aa18.56■□□□□ 0.56
SF3B1-204ENST00000414963 ERVV-2B6SEH9 535 aa18.55■□□□□ 0.56
SF3B1-204ENST00000414963 RBM6P78332 1123 aaKnown RBP18.55■□□□□ 0.56
SF3B1-204ENST00000414963 ILDR1Q86SU0 546 aaPredicted RBP18.55■□□□□ 0.56
SF3B1-204ENST00000414963 RGS17Q9UGC6 210 aaPredicted RBP18.54■□□□□ 0.56
SF3B1-204ENST00000414963 FANCIQ9NVI1 1328 aa18.53■□□□□ 0.56
SF3B1-204ENST00000414963 TEFQ10587 303 aa18.53■□□□□ 0.56
SF3B1-204ENST00000414963 MARCH10Q8NA82 808 aaPredicted RBP18.53■□□□□ 0.56
SF3B1-204ENST00000414963 SLC52A2Q9HAB3 445 aa18.53■□□□□ 0.56
SF3B1-204ENST00000414963 MRC1P22897 1456 aa18.52■□□□□ 0.56
SF3B1-204ENST00000414963 MBIPQ9NS73 344 aa18.52■□□□□ 0.56
SF3B1-204ENST00000414963 SCN11AQ9UI33 1791 aa18.51■□□□□ 0.55
SF3B1-204ENST00000414963 SEPT12Q8IYM1 358 aa18.51■□□□□ 0.55
SF3B1-204ENST00000414963 TSR2Q969E8 191 aaKnown RBP18.51■□□□□ 0.55
SF3B1-204ENST00000414963 LAS1LQ9Y4W2 734 aaKnown RBP18.51■□□□□ 0.55
SF3B1-204ENST00000414963 CT47B1P0C2W7 299 aaPredicted RBP18.49■□□□□ 0.55
SF3B1-204ENST00000414963 CABP4P57796 275 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms