RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 NLRP2Q9NX02 1062 aa18.71■□□□□ 0.59
SKA1-202ENST00000398452 GLI3P10071 1580 aa18.7■□□□□ 0.58
SKA1-202ENST00000398452 VPS72Q15906 364 aa18.7■□□□□ 0.58
SKA1-202ENST00000398452 SEPT12Q8IYM1 358 aa18.7■□□□□ 0.58
SKA1-202ENST00000398452 BTG4Q9NY30 223 aa18.7■□□□□ 0.58
SKA1-202ENST00000398452 AXIN2Q9Y2T1 843 aa18.7■□□□□ 0.58
SKA1-202ENST00000398452 ERBB3P21860 1342 aa18.7■□□□□ 0.58
SKA1-202ENST00000398452 IGSF1Q8N6C5 1336 aa18.7■□□□□ 0.58
SKA1-202ENST00000398452 ABCA3Q99758 1704 aa18.69■□□□□ 0.58
SKA1-202ENST00000398452 APAF1O14727 1248 aa18.69■□□□□ 0.58
SKA1-202ENST00000398452 TOM1L2Q6ZVM7 507 aa18.69■□□□□ 0.58
SKA1-202ENST00000398452 RSPH6AQ9H0K4 717 aa18.69■□□□□ 0.58
SKA1-202ENST00000398452 STRN4Q9NRL3 753 aa18.69■□□□□ 0.58
SKA1-202ENST00000398452 SALL2Q9Y467 1007 aaPredicted RBP18.69■□□□□ 0.58
SKA1-202ENST00000398452 ZBED9Q6R2W3 1325 aa18.69■□□□□ 0.58
SKA1-202ENST00000398452 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.68■□□□□ 0.58
SKA1-202ENST00000398452 PLCH1Q4KWH8 1693 aa18.67■□□□□ 0.58
SKA1-202ENST00000398452 TCP11L2Q8N4U5 519 aa18.67■□□□□ 0.58
SKA1-202ENST00000398452 NEUROD2Q15784 382 aa18.66■□□□□ 0.58
SKA1-202ENST00000398452 NBPF6Q5VWK0 638 aa18.66■□□□□ 0.58
SKA1-202ENST00000398452 AEBP1Q8IUX7 1158 aa18.66■□□□□ 0.58
SKA1-202ENST00000398452 NBPF4Q96M43 638 aa18.66■□□□□ 0.58
SKA1-202ENST00000398452 WDR17Q8IZU2 1322 aa18.66■□□□□ 0.58
SKA1-202ENST00000398452 FAM98CQ17RN3 349 aaKnown RBP18.65■□□□□ 0.58
SKA1-202ENST00000398452 REM2Q8IYK8 340 aaPredicted RBP18.65■□□□□ 0.58
SKA1-202ENST00000398452 USHBP1Q8N6Y0 703 aa18.65■□□□□ 0.58
SKA1-202ENST00000398452 RAPGEF4Q8WZA2 1011 aa18.65■□□□□ 0.58
SKA1-202ENST00000398452 PLEKHF1Q96S99 279 aa18.65■□□□□ 0.58
SKA1-202ENST00000398452 COL14A1Q05707 1796 aaKnown RBP18.65■□□□□ 0.58
SKA1-202ENST00000398452 BRWD3Q6RI45 1802 aa18.65■□□□□ 0.58
SKA1-202ENST00000398452 SENP3-EIF4A1A0A087X0R7 540 aa18.64■□□□□ 0.57
SKA1-202ENST00000398452 LMOD3Q0VAK6 560 aa18.64■□□□□ 0.57
SKA1-202ENST00000398452 TATP17735 454 aaPredicted RBP18.63■□□□□ 0.57
SKA1-202ENST00000398452 GAS2L2Q8NHY3 880 aa18.63■□□□□ 0.57
SKA1-202ENST00000398452 RRP7AQ9Y3A4 280 aaKnown RBP18.63■□□□□ 0.57
SKA1-202ENST00000398452 KDRP35968 1356 aa18.63■□□□□ 0.57
SKA1-202ENST00000398452 TMPOP42166 694 aaKnown RBP18.62■□□□□ 0.57
SKA1-202ENST00000398452 RIPK4P57078 832 aa18.62■□□□□ 0.57
SKA1-202ENST00000398452 NFE2L2Q16236 605 aa18.62■□□□□ 0.57
SKA1-202ENST00000398452 PLEKHO1Q53GL0 409 aaPredicted RBP18.62■□□□□ 0.57
SKA1-202ENST00000398452 KRT27Q7Z3Y8 459 aa18.62■□□□□ 0.57
SKA1-202ENST00000398452 DEFB132Q7Z7B7 95 aa18.62■□□□□ 0.57
SKA1-202ENST00000398452 CCDC125Q86Z20 511 aa18.62■□□□□ 0.57
SKA1-202ENST00000398452 COL5A2P05997 1499 aaPredicted RBP18.62■□□□□ 0.57
SKA1-202ENST00000398452 NWD2Q9ULI1 1742 aa18.62■□□□□ 0.57
SKA1-202ENST00000398452 COL18A1P39060 1754 aa18.62■□□□□ 0.57
SKA1-202ENST00000398452 FAM208AQ9UK61 1670 aaKnown RBP18.61■□□□□ 0.57
SKA1-202ENST00000398452 CAMTA1Q9Y6Y1 1673 aa18.61■□□□□ 0.57
SKA1-202ENST00000398452 PDE3BQ13370 1112 aa18.61■□□□□ 0.57
SKA1-202ENST00000398452 SF3B2Q13435 895 aaKnown RBP18.61■□□□□ 0.57
SKA1-202ENST00000398452 AMOTQ4VCS5 1084 aa18.61■□□□□ 0.57
SKA1-202ENST00000398452 RGPD1P0DJD0 1748 aa18.6■□□□□ 0.57
SKA1-202ENST00000398452 FAM182BQ5T319 152 aa18.6■□□□□ 0.57
SKA1-202ENST00000398452 CARD10Q9BWT7 1032 aa18.6■□□□□ 0.57
SKA1-202ENST00000398452 LMO7Q8WWI1 1683 aa18.6■□□□□ 0.57
SKA1-202ENST00000398452 CALD1Q05682 793 aaKnown RBP18.59■□□□□ 0.57
SKA1-202ENST00000398452 CCDC27Q2M243 656 aa18.59■□□□□ 0.57
SKA1-202ENST00000398452 LARP1Q6PKG0 1096 aaKnown RBP18.59■□□□□ 0.57
SKA1-202ENST00000398452 RTF1Q92541 710 aaKnown RBP18.59■□□□□ 0.57
SKA1-202ENST00000398452 PHACTR3Q96KR7 559 aa18.59■□□□□ 0.57
SKA1-202ENST00000398452 RGPD5Q99666 1765 aa18.59■□□□□ 0.57
SKA1-202ENST00000398452 EP400Q96L91 3159 aa18.58■□□□□ 0.57
SKA1-202ENST00000398452 CRB1P82279 1406 aa18.58■□□□□ 0.57
SKA1-202ENST00000398452 ONECUT3O60422 494 aaPredicted RBP18.58■□□□□ 0.56
SKA1-202ENST00000398452 USP35Q9P2H5 1018 aa18.58■□□□□ 0.56
SKA1-202ENST00000398452 GOLGA2Q08379 1002 aa18.57■□□□□ 0.56
SKA1-202ENST00000398452 C1orf141Q5JVX7 400 aa18.57■□□□□ 0.56
SKA1-202ENST00000398452 SPG7Q9UQ90 795 aa18.57■□□□□ 0.56
SKA1-202ENST00000398452 NRAPQ86VF7 1730 aa18.57■□□□□ 0.56
SKA1-202ENST00000398452 SPATA31A5Q5VU36 1347 aa18.56■□□□□ 0.56
SKA1-202ENST00000398452 SPATA31A7Q8IWB4 1347 aa18.56■□□□□ 0.56
SKA1-202ENST00000398452 IL2RBP14784 551 aa18.55■□□□□ 0.56
SKA1-202ENST00000398452 MTHFSDQ2M296 383 aaKnown RBP18.55■□□□□ 0.56
SKA1-202ENST00000398452 WDR63Q8IWG1 891 aa18.55■□□□□ 0.56
SKA1-202ENST00000398452 WWC1Q8IX03 1113 aa18.55■□□□□ 0.56
SKA1-202ENST00000398452 PLEKHG2Q9H7P9 1386 aa18.55■□□□□ 0.56
SKA1-202ENST00000398452 NCAPD2Q15021 1401 aa18.54■□□□□ 0.56
SKA1-202ENST00000398452 GNAT3A8MTJ3 354 aa18.53■□□□□ 0.56
SKA1-202ENST00000398452 ZNF530Q6P9A1 599 aaPredicted RBP18.53■□□□□ 0.56
SKA1-202ENST00000398452 CDCA7Q9BWT1 371 aaPredicted RBP18.53■□□□□ 0.56
SKA1-202ENST00000398452 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.53■□□□□ 0.56
SKA1-202ENST00000398452 SPDYE2BA6NHP3 402 aa18.52■□□□□ 0.56
SKA1-202ENST00000398452 HTATSF1O43719 755 aaKnown RBP18.52■□□□□ 0.56
SKA1-202ENST00000398452 SPDYE6P0CI01 402 aa18.52■□□□□ 0.56
SKA1-202ENST00000398452 SPDYE2Q495Y8 402 aa18.52■□□□□ 0.56
SKA1-202ENST00000398452 THRAP3Q9Y2W1 955 aaKnown RBP18.52■□□□□ 0.56
SKA1-202ENST00000398452 RGPD2P0DJD1 1756 aa18.52■□□□□ 0.55
SKA1-202ENST00000398452 E9PSI1 815 aa18.51■□□□□ 0.55
SKA1-202ENST00000398452 MYH16Q9H6N6 1097 aa18.51■□□□□ 0.55
SKA1-202ENST00000398452 SPATA31A1Q5TZJ5 1347 aa18.5■□□□□ 0.55
SKA1-202ENST00000398452 AKAP4Q5JQC9 854 aa18.5■□□□□ 0.55
SKA1-202ENST00000398452 MAP3K5Q99683 1374 aa18.5■□□□□ 0.55
SKA1-202ENST00000398452 HSP90AB1P08238 724 aaKnown RBP18.49■□□□□ 0.55
SKA1-202ENST00000398452 ZCRB1Q8TBF4 217 aaKnown RBP18.49■□□□□ 0.55
SKA1-202ENST00000398452 TRIM35Q9UPQ4 493 aa18.49■□□□□ 0.55
SKA1-202ENST00000398452 BAG6P46379 1132 aa18.48■□□□□ 0.55
SKA1-202ENST00000398452 IFNL2Q8IZJ0 200 aa18.48■□□□□ 0.55
SKA1-202ENST00000398452 IL16Q14005 1332 aa18.48■□□□□ 0.55
SKA1-202ENST00000398452 ZNF521Q96K83 1311 aa18.48■□□□□ 0.55
SKA1-202ENST00000398452 PCDH11XQ9BZA7 1347 aa18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms