RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 TCP11L2Q8N4U5 519 aa18.67■□□□□ 0.58
HMGA1-203ENST00000374116 CARD10Q9BWT7 1032 aa18.67■□□□□ 0.58
HMGA1-203ENST00000374116 RBM6P78332 1123 aaKnown RBP18.67■□□□□ 0.58
HMGA1-203ENST00000374116 AEBP1Q8IUX7 1158 aa18.67■□□□□ 0.58
HMGA1-203ENST00000374116 CFAP53Q96M91 514 aa18.67■□□□□ 0.58
HMGA1-203ENST00000374116 HMOX1P09601 288 aa18.66■□□□□ 0.58
HMGA1-203ENST00000374116 WDR43Q15061 677 aaKnown RBP eCLIP18.65■□□□□ 0.58
HMGA1-203ENST00000374116 B4GALNT3Q6L9W6 998 aa18.65■□□□□ 0.58
HMGA1-203ENST00000374116 SULT6B1Q6IMI4 303 aa18.64■□□□□ 0.57
HMGA1-203ENST00000374116 FAM208AQ9UK61 1670 aaKnown RBP18.64■□□□□ 0.57
HMGA1-203ENST00000374116 RCAN3Q9UKA8 241 aa18.63■□□□□ 0.57
HMGA1-203ENST00000374116 SALL2Q9Y467 1007 aaPredicted RBP18.63■□□□□ 0.57
HMGA1-203ENST00000374116 FAM182BQ5T319 152 aa18.62■□□□□ 0.57
HMGA1-203ENST00000374116 SEPT12Q8IYM1 358 aa18.62■□□□□ 0.57
HMGA1-203ENST00000374116 IGSF1Q8N6C5 1336 aa18.62■□□□□ 0.57
HMGA1-203ENST00000374116 ZNF521Q96K83 1311 aa18.62■□□□□ 0.57
HMGA1-203ENST00000374116 MEGF6O75095 1541 aa18.61■□□□□ 0.57
HMGA1-203ENST00000374116 RGPD1P0DJD0 1748 aa18.61■□□□□ 0.57
HMGA1-203ENST00000374116 U2AF1L5P0DN76 240 aaPredicted RBP18.6■□□□□ 0.57
HMGA1-203ENST00000374116 RRP1P56182 461 aaKnown RBP18.6■□□□□ 0.57
HMGA1-203ENST00000374116 U2AF1Q01081 240 aaKnown RBP eCLIP18.6■□□□□ 0.57
HMGA1-203ENST00000374116 RGS12O14924 1447 aa18.6■□□□□ 0.57
HMGA1-203ENST00000374116 IL2RBP14784 551 aa18.6■□□□□ 0.57
HMGA1-203ENST00000374116 BARGINQ6ZT62 677 aa18.6■□□□□ 0.57
HMGA1-203ENST00000374116 CDCA7LQ96GN5 454 aa18.6■□□□□ 0.57
HMGA1-203ENST00000374116 THRAP3Q9Y2W1 955 aaKnown RBP18.6■□□□□ 0.57
HMGA1-203ENST00000374116 NOP58Q9Y2X3 529 aaKnown RBP18.6■□□□□ 0.57
HMGA1-203ENST00000374116 EP400Q96L91 3159 aa18.59■□□□□ 0.57
HMGA1-203ENST00000374116 WNK3Q9BYP7 1800 aa18.59■□□□□ 0.57
HMGA1-203ENST00000374116 BRWD3Q6RI45 1802 aa18.58■□□□□ 0.57
HMGA1-203ENST00000374116 ONECUT3O60422 494 aaPredicted RBP18.58■□□□□ 0.56
HMGA1-203ENST00000374116 RAPGEF4Q8WZA2 1011 aa18.58■□□□□ 0.56
HMGA1-203ENST00000374116 DISP2A7MBM2 1401 aa18.57■□□□□ 0.56
HMGA1-203ENST00000374116 THSD7AQ9UPZ6 1657 aa18.56■□□□□ 0.56
HMGA1-203ENST00000374116 CCDC136Q96JN2 1154 aa18.56■□□□□ 0.56
HMGA1-203ENST00000374116 TATP17735 454 aaPredicted RBP18.56■□□□□ 0.56
HMGA1-203ENST00000374116 DDB1Q16531 1140 aa18.56■□□□□ 0.56
HMGA1-203ENST00000374116 NCAPD2Q15021 1401 aa18.55■□□□□ 0.56
HMGA1-203ENST00000374116 DDX54Q8TDD1 881 aaKnown RBP18.55■□□□□ 0.56
HMGA1-203ENST00000374116 LRRC37A3O60309 1634 aa18.54■□□□□ 0.56
HMGA1-203ENST00000374116 EXOC5O00471 708 aa18.54■□□□□ 0.56
HMGA1-203ENST00000374116 PRKAR2BP31323 418 aa18.54■□□□□ 0.56
HMGA1-203ENST00000374116 NGEFQ8N5V2 710 aa18.53■□□□□ 0.56
HMGA1-203ENST00000374116 RSPH6AQ9H0K4 717 aa18.53■□□□□ 0.56
HMGA1-203ENST00000374116 KDRP35968 1356 aa18.53■□□□□ 0.56
HMGA1-203ENST00000374116 CCDC146Q8IYE0 955 aa18.53■□□□□ 0.56
HMGA1-203ENST00000374116 PHACTR3Q96KR7 559 aa18.53■□□□□ 0.56
HMGA1-203ENST00000374116 PARP4Q9UKK3 1724 aaKnown RBP18.52■□□□□ 0.56
HMGA1-203ENST00000374116 OVOS2A0A0G2JMS6 1433 aa18.52■□□□□ 0.56
HMGA1-203ENST00000374116 ZCRB1Q8TBF4 217 aaKnown RBP18.52■□□□□ 0.56
HMGA1-203ENST00000374116 MARCH10Q8NA82 808 aaPredicted RBP18.51■□□□□ 0.55
HMGA1-203ENST00000374116 KRT27Q7Z3Y8 459 aa18.51■□□□□ 0.55
HMGA1-203ENST00000374116 TRMT2AQ8IZ69 625 aaKnown RBP18.51■□□□□ 0.55
HMGA1-203ENST00000374116 CDCA7Q9BWT1 371 aaPredicted RBP18.51■□□□□ 0.55
HMGA1-203ENST00000374116 APAF1O14727 1248 aa18.5■□□□□ 0.55
HMGA1-203ENST00000374116 DUSP27Q5VZP5 1158 aa18.5■□□□□ 0.55
HMGA1-203ENST00000374116 SHANK3Q9BYB0 1731 aa18.5■□□□□ 0.55
HMGA1-203ENST00000374116 MTHFSDQ2M296 383 aaKnown RBP18.49■□□□□ 0.55
HMGA1-203ENST00000374116 ANO8Q9HCE9 1232 aaPredicted RBP18.49■□□□□ 0.55
HMGA1-203ENST00000374116 TNS2Q63HR2 1409 aa18.48■□□□□ 0.55
HMGA1-203ENST00000374116 KAT6BQ8WYB5 2073 aa18.48■□□□□ 0.55
HMGA1-203ENST00000374116 CYP27B1O15528 508 aa18.48■□□□□ 0.55
HMGA1-203ENST00000374116 FCHSD2O94868 740 aa18.48■□□□□ 0.55
HMGA1-203ENST00000374116 GOLGA2Q08379 1002 aa18.48■□□□□ 0.55
HMGA1-203ENST00000374116 SLFN5Q08AF3 891 aa18.48■□□□□ 0.55
HMGA1-203ENST00000374116 PLEKHF1Q96S99 279 aa18.47■□□□□ 0.55
HMGA1-203ENST00000374116 ZNF530Q6P9A1 599 aaPredicted RBP18.46■□□□□ 0.55
HMGA1-203ENST00000374116 PKD1L3Q7Z443 1732 aa18.46■□□□□ 0.55
HMGA1-203ENST00000374116 PLEKHO1Q53GL0 409 aaPredicted RBP18.46■□□□□ 0.55
HMGA1-203ENST00000374116 EXOC6Q8TAG9 804 aa18.46■□□□□ 0.55
HMGA1-203ENST00000374116 SPG7Q9UQ90 795 aa18.46■□□□□ 0.55
HMGA1-203ENST00000374116 NCBP3Q53F19 620 aaKnown RBP18.45■□□□□ 0.54
HMGA1-203ENST00000374116 ACSBG1Q96GR2 724 aa18.45■□□□□ 0.54
HMGA1-203ENST00000374116 PCDH11XQ9BZA7 1347 aa18.45■□□□□ 0.54
HMGA1-203ENST00000374116 PCDH11YQ9BZA8 1340 aa18.45■□□□□ 0.54
HMGA1-203ENST00000374116 RUNDC1Q96C34 613 aa18.44■□□□□ 0.54
HMGA1-203ENST00000374116 RRP7AQ9Y3A4 280 aaKnown RBP18.44■□□□□ 0.54
HMGA1-203ENST00000374116 NEUROD2Q15784 382 aa18.44■□□□□ 0.54
HMGA1-203ENST00000374116 PTF1AQ7RTS3 328 aa18.44■□□□□ 0.54
HMGA1-203ENST00000374116 PHKG2P15735 406 aa18.43■□□□□ 0.54
HMGA1-203ENST00000374116 AMOTQ4VCS5 1084 aa18.42■□□□□ 0.54
HMGA1-203ENST00000374116 MPRIPQ6WCQ1 1025 aa18.42■□□□□ 0.54
HMGA1-203ENST00000374116 SPINK5Q9NQ38 1064 aaPredicted RBP18.42■□□□□ 0.54
HMGA1-203ENST00000374116 KCNQ2O43526 872 aa18.42■□□□□ 0.54
HMGA1-203ENST00000374116 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.42■□□□□ 0.54
HMGA1-203ENST00000374116 MAPK8IP3Q9UPT6 1336 aa18.41■□□□□ 0.54
HMGA1-203ENST00000374116 IFNL2Q8IZJ0 200 aa18.41■□□□□ 0.54
HMGA1-203ENST00000374116 C1orf141Q5JVX7 400 aa18.4■□□□□ 0.54
HMGA1-203ENST00000374116 WWC1Q8IX03 1113 aa18.4■□□□□ 0.54
HMGA1-203ENST00000374116 SYTL4Q96C24 671 aaPredicted RBP18.4■□□□□ 0.54
HMGA1-203ENST00000374116 E9PSI1 815 aa18.39■□□□□ 0.54
HMGA1-203ENST00000374116 TRIM37O94972 964 aa18.39■□□□□ 0.54
HMGA1-203ENST00000374116 NEFMP07197 916 aa18.39■□□□□ 0.54
HMGA1-203ENST00000374116 DCTN1Q14203 1278 aa18.39■□□□□ 0.54
HMGA1-203ENST00000374116 LGR6Q9HBX8 967 aa18.39■□□□□ 0.54
HMGA1-203ENST00000374116 CCDC27Q2M243 656 aa18.39■□□□□ 0.53
HMGA1-203ENST00000374116 IPO9Q96P70 1041 aaKnown RBP18.39■□□□□ 0.53
HMGA1-203ENST00000374116 DLG5Q8TDM6 1919 aa18.38■□□□□ 0.53
HMGA1-203ENST00000374116 RTL5Q5HYW3 569 aaPredicted RBP18.38■□□□□ 0.53
HMGA1-203ENST00000374116 FAM196AQ6ZSG2 479 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms