RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 FERP16591 822 aa7.2□□□□□ -1.26
CSMD1-201ENST00000335551 TBC1D2BQ9UPU7 963 aa7.2□□□□□ -1.26
CSMD1-201ENST00000335551 DNAJC21Q5F1R6 531 aaKnown RBP7.2□□□□□ -1.26
CSMD1-201ENST00000335551 GOLGA4Q13439 2230 aaKnown RBP7.2□□□□□ -1.26
CSMD1-201ENST00000335551 RRBP1Q9P2E9 1410 aaKnown RBP7.2□□□□□ -1.26
CSMD1-201ENST00000335551 SYCE3A1L190 88 aa7.2□□□□□ -1.26
CSMD1-201ENST00000335551 ZFYP08048 801 aaPredicted RBP7.2□□□□□ -1.26
CSMD1-201ENST00000335551 FKBP5Q13451 457 aaPredicted RBP7.2□□□□□ -1.26
CSMD1-201ENST00000335551 NOL7Q9UMY1 257 aaKnown RBP7.2□□□□□ -1.26
CSMD1-201ENST00000335551 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.2□□□□□ -1.26
CSMD1-201ENST00000335551 MIPOL1Q8TD10 442 aa7.2□□□□□ -1.26
CSMD1-201ENST00000335551 RUNDC1Q96C34 613 aa7.2□□□□□ -1.26
CSMD1-201ENST00000335551 BMP2KQ9NSY1 1161 aaPredicted RBP7.2□□□□□ -1.26
CSMD1-201ENST00000335551 ZWINTO95229 277 aa7.2□□□□□ -1.26
CSMD1-201ENST00000335551 FBF1Q8TES7 1133 aa7.2□□□□□ -1.26
CSMD1-201ENST00000335551 PPP6R1Q9UPN7 881 aa7.2□□□□□ -1.26
CSMD1-201ENST00000335551 STMN4Q9H169 189 aaPredicted RBP7.2□□□□□ -1.26
CSMD1-201ENST00000335551 MIA2Q96PC5 1412 aa7.2□□□□□ -1.26
CSMD1-201ENST00000335551 A0A1B0GUA9 196 aa7.2□□□□□ -1.26
CSMD1-201ENST00000335551 UBTFL1P0CB47 393 aaPredicted RBP7.2□□□□□ -1.26
CSMD1-201ENST00000335551 WASHC4Q2M389 1173 aa7.19□□□□□ -1.26
CSMD1-201ENST00000335551 GOPCQ9HD26 462 aa7.19□□□□□ -1.26
CSMD1-201ENST00000335551 CCDC6Q16204 474 aa7.19□□□□□ -1.26
CSMD1-201ENST00000335551 GBP6Q6ZN66 633 aa7.19□□□□□ -1.26
CSMD1-201ENST00000335551 CTAGE5O15320 804 aa7.19□□□□□ -1.26
CSMD1-201ENST00000335551 CEP131Q9UPN4 1083 aa7.19□□□□□ -1.26
CSMD1-201ENST00000335551 PAFAH1B1P43034 410 aa7.19□□□□□ -1.26
CSMD1-201ENST00000335551 TUBB4BP68371 445 aa7.19□□□□□ -1.26
CSMD1-201ENST00000335551 TRERF1Q96PN7 1200 aa7.19□□□□□ -1.26
CSMD1-201ENST00000335551 CEBPZQ03701 1054 aaKnown RBP7.19□□□□□ -1.26
CSMD1-201ENST00000335551 GCC1Q96CN9 775 aa7.19□□□□□ -1.26
CSMD1-201ENST00000335551 ZSCAN31Q96LW9 406 aaPredicted RBP7.19□□□□□ -1.26
CSMD1-201ENST00000335551 TTC14Q96N46 770 aa7.19□□□□□ -1.26
CSMD1-201ENST00000335551 SUDS3Q9H7L9 328 aaPredicted RBP7.19□□□□□ -1.26
CSMD1-201ENST00000335551 FGFR1OPO95684 399 aaKnown RBP7.19□□□□□ -1.26
CSMD1-201ENST00000335551 RAI14Q9P0K7 980 aa7.19□□□□□ -1.26
CSMD1-201ENST00000335551 MYH10P35580 1976 aa7.19□□□□□ -1.26
CSMD1-201ENST00000335551 WASF1Q92558 559 aa7.19□□□□□ -1.26
CSMD1-201ENST00000335551 WIZO95785 1651 aa7.19□□□□□ -1.26
CSMD1-201ENST00000335551 USO1O60763 962 aaKnown RBP7.18□□□□□ -1.26
CSMD1-201ENST00000335551 C16orf45Q96MC5 204 aaPredicted RBP7.18□□□□□ -1.26
CSMD1-201ENST00000335551 SRCIN1Q9C0H9 1055 aa7.18□□□□□ -1.26
CSMD1-201ENST00000335551 CCDC88BA6NC98 1476 aa7.18□□□□□ -1.26
CSMD1-201ENST00000335551 CCDC160A6NGH7 325 aa7.18□□□□□ -1.26
CSMD1-201ENST00000335551 CCDC121Q6ZUS5 278 aa7.18□□□□□ -1.26
CSMD1-201ENST00000335551 NEBLO76041 1014 aa7.18□□□□□ -1.26
CSMD1-201ENST00000335551 KIF4BQ2VIQ3 1234 aa7.18□□□□□ -1.26
CSMD1-201ENST00000335551 LARP1BQ659C4 914 aaKnown RBP7.18□□□□□ -1.26
CSMD1-201ENST00000335551 RNF168Q8IYW5 571 aaPredicted RBP7.18□□□□□ -1.26
CSMD1-201ENST00000335551 L3MBTL2Q969R5 705 aa7.18□□□□□ -1.26
CSMD1-201ENST00000335551 FKBP15Q5T1M5 1219 aa7.18□□□□□ -1.26
CSMD1-201ENST00000335551 DDX24Q9GZR7 859 aaKnown RBP eCLIP7.18□□□□□ -1.262e-6■■■■■ 29.1
CSMD1-201ENST00000335551 CLIP2Q9UDT6 1046 aa7.18□□□□□ -1.26
CSMD1-201ENST00000335551 BACH2Q9BYV9 841 aa7.18□□□□□ -1.26
CSMD1-201ENST00000335551 HSF2BPO75031 334 aa7.18□□□□□ -1.26
CSMD1-201ENST00000335551 NGDNQ8NEJ9 315 aaKnown RBP7.18□□□□□ -1.26
CSMD1-201ENST00000335551 WASHC2AQ641Q2 1341 aa7.18□□□□□ -1.26
CSMD1-201ENST00000335551 HMGB2P26583 209 aaKnown RBP7.18□□□□□ -1.26
CSMD1-201ENST00000335551 KIF5BP33176 963 aa7.18□□□□□ -1.26
CSMD1-201ENST00000335551 TOP1P11387 765 aaKnown RBP7.18□□□□□ -1.26
CSMD1-201ENST00000335551 CCDC57Q2TAC2 916 aa7.18□□□□□ -1.26
CSMD1-201ENST00000335551 CCDC178Q5BJE1 867 aa7.18□□□□□ -1.26
CSMD1-201ENST00000335551 HYPKQ9NX55 129 aa7.18□□□□□ -1.26
CSMD1-201ENST00000335551 MAATS1Q7Z4T9 603 aa7.17□□□□□ -1.26
CSMD1-201ENST00000335551 CCDC94Q9BW85 323 aaPredicted RBP7.17□□□□□ -1.26
CSMD1-201ENST00000335551 ANAPC4Q9UJX5 808 aa7.17□□□□□ -1.26
CSMD1-201ENST00000335551 IKBKGQ9Y6K9 419 aa7.17□□□□□ -1.26
CSMD1-201ENST00000335551 SH3BGRP55822 239 aaPredicted RBP7.17□□□□□ -1.26
CSMD1-201ENST00000335551 CCDC97Q96F63 343 aaPredicted RBP7.17□□□□□ -1.26
CSMD1-201ENST00000335551 RIPK4P57078 832 aa7.17□□□□□ -1.26
CSMD1-201ENST00000335551 XPCQ01831 940 aaPredicted RBP7.17□□□□□ -1.26
CSMD1-201ENST00000335551 SH2D4BQ5SQS7 431 aa7.17□□□□□ -1.26
CSMD1-201ENST00000335551 CKAP4Q07065 602 aaKnown RBP7.17□□□□□ -1.26
CSMD1-201ENST00000335551 SCAND2PQ9GZW5 306 aaPredicted RBP7.17□□□□□ -1.26
CSMD1-201ENST00000335551 ARFGAP3Q9NP61 516 aa7.17□□□□□ -1.26
CSMD1-201ENST00000335551 CECR2Q9BXF3 1484 aa7.17□□□□□ -1.26
CSMD1-201ENST00000335551 TUBB4AP04350 444 aa7.17□□□□□ -1.26
CSMD1-201ENST00000335551 LIG1P18858 919 aa7.17□□□□□ -1.26
CSMD1-201ENST00000335551 CCDC150Q8NCX0 1101 aa7.17□□□□□ -1.26
CSMD1-201ENST00000335551 CCDC7Q96M83 1385 aa7.17□□□□□ -1.26
CSMD1-201ENST00000335551 PANK1Q8TE04 598 aa7.17□□□□□ -1.26
CSMD1-201ENST00000335551 GNAI3P08754 354 aa7.17□□□□□ -1.26
CSMD1-201ENST00000335551 PLEKHH2Q8IVE3 1493 aa7.17□□□□□ -1.26
CSMD1-201ENST00000335551 SMARCA4P51532 1647 aa7.17□□□□□ -1.26
CSMD1-201ENST00000335551 STX1AQ16623 288 aa7.17□□□□□ -1.26
CSMD1-201ENST00000335551 SPECC1Q5M775 1068 aa7.17□□□□□ -1.26
CSMD1-201ENST00000335551 ANO10Q9NW15 660 aa7.17□□□□□ -1.26
CSMD1-201ENST00000335551 YEATS4O95619 227 aa7.17□□□□□ -1.26
CSMD1-201ENST00000335551 KRT32Q14532 448 aa7.17□□□□□ -1.26
CSMD1-201ENST00000335551 RASSF4Q9H2L5 321 aa7.17□□□□□ -1.26
CSMD1-201ENST00000335551 PHAXQ9H814 394 aaKnown RBP7.17□□□□□ -1.26
CSMD1-201ENST00000335551 EBAG9O00559 213 aa7.16□□□□□ -1.26
CSMD1-201ENST00000335551 PDE3AQ14432 1141 aa7.16□□□□□ -1.26
CSMD1-201ENST00000335551 POLA1P09884 1462 aaPredicted RBP7.16□□□□□ -1.26
CSMD1-201ENST00000335551 RAPGEF2Q9Y4G8 1499 aa7.16□□□□□ -1.26
CSMD1-201ENST00000335551 SNW1Q13573 536 aaKnown RBP7.16□□□□□ -1.26
CSMD1-201ENST00000335551 WASHC2CQ9Y4E1 1318 aa7.16□□□□□ -1.26
CSMD1-201ENST00000335551 HMGB1P1B2RPK0 211 aaPredicted RBP7.16□□□□□ -1.26
CSMD1-201ENST00000335551 TACC1O75410 805 aa7.16□□□□□ -1.26
CSMD1-201ENST00000335551 CEP135Q66GS9 1140 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms