RNA–Protein interactions for RNA: ENST00000323144.11

TPM3-204, Transcript of tropomyosin 3, humanhuman

TSL 2 BASIC

Gene TPM3, Length 1,088 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-204ENST00000323144 CARD14Q9BXL6 1004 aa17.26■□□□□ 0.35
TPM3-204ENST00000323144 SPON1Q9HCB6 807 aa17.26■□□□□ 0.35
TPM3-204ENST00000323144 NCAPD2Q15021 1401 aa17.26■□□□□ 0.35
TPM3-204ENST00000323144 SLC24A1O60721 1099 aa17.25■□□□□ 0.35
TPM3-204ENST00000323144 ZBTB7AO95365 584 aa17.25■□□□□ 0.35
TPM3-204ENST00000323144 INSRP06213 1382 aa17.25■□□□□ 0.35
TPM3-204ENST00000323144 ZNF827Q17R98 1081 aa17.24■□□□□ 0.35
TPM3-204ENST00000323144 DDX54Q8TDD1 881 aaKnown RBP17.24■□□□□ 0.35
TPM3-204ENST00000323144 STK32BQ9NY57 414 aa17.24■□□□□ 0.35
TPM3-204ENST00000323144 NBPF6Q5VWK0 638 aa17.23■□□□□ 0.35
TPM3-204ENST00000323144 NBPF4Q96M43 638 aa17.23■□□□□ 0.35
TPM3-204ENST00000323144 PPP1R1BQ9UD71 204 aaPredicted RBP17.23■□□□□ 0.35
TPM3-204ENST00000323144 SLC15A2Q16348 729 aa17.22■□□□□ 0.35
TPM3-204ENST00000323144 CDCA8Q53HL2 280 aa17.22■□□□□ 0.35
TPM3-204ENST00000323144 LRRC4BQ9NT99 713 aa17.22■□□□□ 0.35
TPM3-204ENST00000323144 EMILIN1Q9Y6C2 1016 aa17.22■□□□□ 0.35
TPM3-204ENST00000323144 KIF24Q5T7B8 1368 aa17.21■□□□□ 0.35
TPM3-204ENST00000323144 HSP90AB2PQ58FF8 381 aa17.21■□□□□ 0.35
TPM3-204ENST00000323144 PTGER2P43116 358 aa17.2■□□□□ 0.34
TPM3-204ENST00000323144 TIMELESSQ9UNS1 1208 aa17.19■□□□□ 0.34
TPM3-204ENST00000323144 KCNQ4P56696 695 aa17.18■□□□□ 0.34
TPM3-204ENST00000323144 ZCRB1Q8TBF4 217 aaKnown RBP17.18■□□□□ 0.34
TPM3-204ENST00000323144 SYTL4Q96C24 671 aaPredicted RBP17.18■□□□□ 0.34
TPM3-204ENST00000323144 ATF5Q9Y2D1 282 aaPredicted RBP17.18■□□□□ 0.34
TPM3-204ENST00000323144 C4BP0C0L5 1744 aa17.18■□□□□ 0.34
TPM3-204ENST00000323144 POLR3GLQ9BT43 218 aa17.17■□□□□ 0.34
TPM3-204ENST00000323144 UBR3Q6ZT12 1888 aa17.16■□□□□ 0.34
TPM3-204ENST00000323144 PRIM1P49642 420 aaKnown RBP17.16■□□□□ 0.34
TPM3-204ENST00000323144 HSPA5P11021 654 aaKnown RBP17.15■□□□□ 0.34
TPM3-204ENST00000323144 RAPGEF4Q8WZA2 1011 aa17.15■□□□□ 0.34
TPM3-204ENST00000323144 SGIP1Q9BQI5 828 aa17.15■□□□□ 0.34
TPM3-204ENST00000323144 CGNL1Q0VF96 1302 aa17.15■□□□□ 0.34
TPM3-204ENST00000323144 PCDH11XQ9BZA7 1347 aa17.15■□□□□ 0.34
TPM3-204ENST00000323144 PCDH11YQ9BZA8 1340 aa17.15■□□□□ 0.34
TPM3-204ENST00000323144 AKT1S1Q96B36 256 aa17.14■□□□□ 0.33
TPM3-204ENST00000323144 MTFR1LQ9H019 292 aa17.14■□□□□ 0.33
TPM3-204ENST00000323144 PNPLA7Q6ZV29 1317 aa17.14■□□□□ 0.33
TPM3-204ENST00000323144 TATP17735 454 aaPredicted RBP17.13■□□□□ 0.33
TPM3-204ENST00000323144 PPM1GO15355 546 aaPredicted RBP17.12■□□□□ 0.33
TPM3-204ENST00000323144 CCER1Q8TC90 406 aaPredicted RBP17.12■□□□□ 0.33
TPM3-204ENST00000323144 VIRMAQ69YN4 1812 aaKnown RBP17.12■□□□□ 0.33
TPM3-204ENST00000323144 SLC27A3Q5K4L6 730 aa17.11■□□□□ 0.33
TPM3-204ENST00000323144 FHDC1Q9C0D6 1143 aaPredicted RBP17.11■□□□□ 0.33
TPM3-204ENST00000323144 PALLDQ8WX93 1383 aa17.11■□□□□ 0.33
TPM3-204ENST00000323144 COL5A3P25940 1745 aaPredicted RBP17.1■□□□□ 0.33
TPM3-204ENST00000323144 CHD4Q14839 1912 aa17.1■□□□□ 0.33
TPM3-204ENST00000323144 CYP27B1O15528 508 aa17.1■□□□□ 0.33
TPM3-204ENST00000323144 EIF4G2P78344 907 aaKnown RBP eCLIP17.1■□□□□ 0.33
TPM3-204ENST00000323144 TNNT2P45379 298 aaPredicted RBP17.09■□□□□ 0.33
TPM3-204ENST00000323144 CCNL1Q9UK58 526 aaPredicted RBP17.09■□□□□ 0.33
TPM3-204ENST00000323144 MAP3K5Q99683 1374 aa17.08■□□□□ 0.32
TPM3-204ENST00000323144 WASHC2AQ641Q2 1341 aa17.08■□□□□ 0.32
TPM3-204ENST00000323144 POLKQ9UBT6 870 aa17.08■□□□□ 0.32
TPM3-204ENST00000323144 EYA1Q99502 592 aa17.07■□□□□ 0.32
TPM3-204ENST00000323144 C4AP0C0L4 1744 aa17.06■□□□□ 0.32
TPM3-204ENST00000323144 ZNF831Q5JPB2 1677 aa17.06■□□□□ 0.32
TPM3-204ENST00000323144 YY1P25490 414 aa17.05■□□□□ 0.32
TPM3-204ENST00000323144 EIF4A2Q14240 407 aaKnown RBP17.05■□□□□ 0.32
TPM3-204ENST00000323144 ARXQ96QS3 562 aa17.05■□□□□ 0.32
TPM3-204ENST00000323144 SYT17Q9BSW7 474 aa17.05■□□□□ 0.32
TPM3-204ENST00000323144 SCN11AQ9UI33 1791 aa17.05■□□□□ 0.32
TPM3-204ENST00000323144 TJP1Q07157 1748 aa17.04■□□□□ 0.32
TPM3-204ENST00000323144 PANK3Q9H999 370 aa17.04■□□□□ 0.32
TPM3-204ENST00000323144 TFCP2L1Q9NZI6 479 aa17.04■□□□□ 0.32
TPM3-204ENST00000323144 IGSF1Q8N6C5 1336 aa17.03■□□□□ 0.32
TPM3-204ENST00000323144 MPRIPQ6WCQ1 1025 aa17.03■□□□□ 0.32
TPM3-204ENST00000323144 KDM6AO15550 1401 aaPredicted RBP17.03■□□□□ 0.32
TPM3-204ENST00000323144 CICQ96RK0 1608 aaPredicted RBP17.03■□□□□ 0.32
TPM3-204ENST00000323144 MSL1Q68DK7 614 aa17.01■□□□□ 0.31
TPM3-204ENST00000323144 AMIGO3Q86WK7 504 aa17.01■□□□□ 0.31
TPM3-204ENST00000323144 KLHL34Q8N239 644 aa17.01■□□□□ 0.31
TPM3-204ENST00000323144 KDRP35968 1356 aa17.01■□□□□ 0.31
TPM3-204ENST00000323144 UTRNP46939 3433 aa17■□□□□ 0.31
TPM3-204ENST00000323144 COL23A1Q86Y22 540 aaPredicted RBP17■□□□□ 0.31
TPM3-204ENST00000323144 KIAA1551Q9HCM1 1747 aa17■□□□□ 0.31
TPM3-204ENST00000323144 PLEKHG2Q9H7P9 1386 aa17■□□□□ 0.31
TPM3-204ENST00000323144 KIF7Q2M1P5 1343 aa16.99■□□□□ 0.31
TPM3-204ENST00000323144 PHKG2P15735 406 aa16.99■□□□□ 0.31
TPM3-204ENST00000323144 SLC16A10Q8TF71 515 aa16.99■□□□□ 0.31
TPM3-204ENST00000323144 PIGBQ92521 554 aa16.99■□□□□ 0.31
TPM3-204ENST00000323144 SPG7Q9UQ90 795 aa16.99■□□□□ 0.31
TPM3-204ENST00000323144 NKX1-1Q15270 411 aaPredicted RBP16.98■□□□□ 0.31
TPM3-204ENST00000323144 SMIM5Q71RC9 77 aa16.98■□□□□ 0.31
TPM3-204ENST00000323144 NLGN2Q8NFZ4 835 aa16.98■□□□□ 0.31
TPM3-204ENST00000323144 ADAMTS7Q9UKP4 1686 aa16.97■□□□□ 0.31
TPM3-204ENST00000323144 DCAF8L1A6NGE4 600 aa16.97■□□□□ 0.31
TPM3-204ENST00000323144 MSH5O43196 834 aa16.97■□□□□ 0.31
TPM3-204ENST00000323144 POLD1P28340 1107 aa16.97■□□□□ 0.31
TPM3-204ENST00000323144 AEBP1Q8IUX7 1158 aa16.97■□□□□ 0.31
TPM3-204ENST00000323144 KIF13BQ9NQT8 1826 aa16.96■□□□□ 0.31
TPM3-204ENST00000323144 LINC00116Q8NCU8 138 aa16.96■□□□□ 0.31
TPM3-204ENST00000323144 GOLGB1Q14789 3259 aaKnown RBP16.96■□□□□ 0.31
TPM3-204ENST00000323144 COL3A1P02461 1466 aaPredicted RBP16.95■□□□□ 0.3
TPM3-204ENST00000323144 MRC1P22897 1456 aa16.95■□□□□ 0.3
TPM3-204ENST00000323144 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.95■□□□□ 0.35e-7■■■□□ 17.7
TPM3-204ENST00000323144 TMOD3Q9NYL9 352 aa16.95■□□□□ 0.3
TPM3-204ENST00000323144 MYH14Q7Z406 1995 aaKnown RBP16.95■□□□□ 0.3
TPM3-204ENST00000323144 PHF14O94880 888 aa16.94■□□□□ 0.3
TPM3-204ENST00000323144 ITPK1Q13572 414 aa16.94■□□□□ 0.3
TPM3-204ENST00000323144 MORC1Q86VD1 984 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms