RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 ZNF652Q9Y2D9 606 aa20.48■□□□□ 0.87
SHANK1-201ENST00000293441 AEBP1Q8IUX7 1158 aa20.48■□□□□ 0.87
SHANK1-201ENST00000293441 MBD3O95983 291 aa20.48■□□□□ 0.87
SHANK1-201ENST00000293441 THUMPD2Q9BTF0 503 aaKnown RBP20.48■□□□□ 0.87
SHANK1-201ENST00000293441 DCTN1Q14203 1278 aa20.47■□□□□ 0.87
SHANK1-201ENST00000293441 NUTM1Q86Y26 1132 aa20.47■□□□□ 0.87
SHANK1-201ENST00000293441 BLOC1S2Q6QNY1 142 aa20.47■□□□□ 0.87
SHANK1-201ENST00000293441 ACBD3Q9H3P7 528 aa20.47■□□□□ 0.87
SHANK1-201ENST00000293441 SKIDA1Q1XH10 827 aa20.47■□□□□ 0.87
SHANK1-201ENST00000293441 DUSP27Q5VZP5 1158 aa20.47■□□□□ 0.87
SHANK1-201ENST00000293441 FAM43AQ8N2R8 423 aa20.47■□□□□ 0.87
SHANK1-201ENST00000293441 JAKMIP1Q96N16 626 aaKnown RBP20.46■□□□□ 0.87
SHANK1-201ENST00000293441 IQGAP2Q13576 1575 aa20.46■□□□□ 0.87
SHANK1-201ENST00000293441 CCDC141Q6ZP82 1450 aa20.46■□□□□ 0.87
SHANK1-201ENST00000293441 RDXP35241 583 aaKnown RBP20.46■□□□□ 0.87
SHANK1-201ENST00000293441 TANGO6Q9C0B7 1094 aa20.46■□□□□ 0.87
SHANK1-201ENST00000293441 PDRG1Q9NUG6 133 aa20.46■□□□□ 0.87
SHANK1-201ENST00000293441 NOL7Q9UMY1 257 aaKnown RBP20.46■□□□□ 0.87
SHANK1-201ENST00000293441 USP5P45974 858 aa20.46■□□□□ 0.87
SHANK1-201ENST00000293441 MPRIPQ6WCQ1 1025 aa20.46■□□□□ 0.87
SHANK1-201ENST00000293441 MYD88Q99836 296 aa20.46■□□□□ 0.87
SHANK1-201ENST00000293441 PDCL3Q9H2J4 239 aa20.45■□□□□ 0.86
SHANK1-201ENST00000293441 LARP1BQ659C4 914 aaKnown RBP20.45■□□□□ 0.86
SHANK1-201ENST00000293441 CTNNA3Q9UI47 895 aa20.45■□□□□ 0.86
SHANK1-201ENST00000293441 HMGXB3Q12766 1538 aa20.45■□□□□ 0.86
SHANK1-201ENST00000293441 SERPINC1P01008 464 aa20.45■□□□□ 0.86
SHANK1-201ENST00000293441 ZNF76P36508 570 aa20.45■□□□□ 0.86
SHANK1-201ENST00000293441 AIDAQ96BJ3 306 aa20.45■□□□□ 0.86
SHANK1-201ENST00000293441 KIF14Q15058 1648 aa20.44■□□□□ 0.86
SHANK1-201ENST00000293441 SSBP05455 408 aaKnown RBP eCLIP20.44■□□□□ 0.86
SHANK1-201ENST00000293441 PIP4K2AP48426 406 aaPredicted RBP20.44■□□□□ 0.86
SHANK1-201ENST00000293441 STIM1Q13586 685 aa20.44■□□□□ 0.86
SHANK1-201ENST00000293441 SPC24Q8NBT2 197 aa20.44■□□□□ 0.86
SHANK1-201ENST00000293441 MAGI1Q96QZ7 1491 aaPredicted RBP20.44■□□□□ 0.86
SHANK1-201ENST00000293441 PRXQ9BXM0 1461 aa20.44■□□□□ 0.86
SHANK1-201ENST00000293441 TMOD2Q9NZR1 351 aa20.44■□□□□ 0.86
SHANK1-201ENST00000293441 MRE11P49959 708 aa20.43■□□□□ 0.86
SHANK1-201ENST00000293441 CDKL5O76039 1030 aa20.43■□□□□ 0.86
SHANK1-201ENST00000293441 TMEM57Q8N5G2 664 aa20.43■□□□□ 0.86
SHANK1-201ENST00000293441 KIAA0586Q9BVV6 1533 aa20.43■□□□□ 0.86
SHANK1-201ENST00000293441 NME9Q86XW9 330 aa20.43■□□□□ 0.86
SHANK1-201ENST00000293441 TNMDQ9H2S6 317 aa20.43■□□□□ 0.86
SHANK1-201ENST00000293441 HSP90B2PQ58FF3 399 aa20.42■□□□□ 0.86
SHANK1-201ENST00000293441 ANKIB1Q9P2G1 1089 aa20.42■□□□□ 0.86
SHANK1-201ENST00000293441 FOXO3O43524 673 aa20.42■□□□□ 0.86
SHANK1-201ENST00000293441 EXOC6BQ9Y2D4 811 aa20.42■□□□□ 0.86
SHANK1-201ENST00000293441 K7ELQ4 463 aaPredicted RBP20.42■□□□□ 0.86
SHANK1-201ENST00000293441 MATR3P43243 847 aaKnown RBP eCLIP20.42■□□□□ 0.86
SHANK1-201ENST00000293441 CEBPAP49715 358 aaPredicted RBP20.42■□□□□ 0.86
SHANK1-201ENST00000293441 MYO6Q9UM54 1294 aa20.42■□□□□ 0.86
SHANK1-201ENST00000293441 AMOTL2Q9Y2J4 779 aa20.42■□□□□ 0.86
SHANK1-201ENST00000293441 ADGRL1O94910 1474 aa20.42■□□□□ 0.86
SHANK1-201ENST00000293441 CAMSAP2Q08AD1 1489 aa20.42■□□□□ 0.86
SHANK1-201ENST00000293441 IBSPP21815 317 aaPredicted RBP20.41■□□□□ 0.86
SHANK1-201ENST00000293441 ZNHIT6Q9NWK9 470 aaKnown RBP20.41■□□□□ 0.86
SHANK1-201ENST00000293441 CAVIN4Q5BKX8 364 aa20.41■□□□□ 0.86
SHANK1-201ENST00000293441 IMMTQ16891 758 aaKnown RBP20.41■□□□□ 0.86
SHANK1-201ENST00000293441 WDR33Q9C0J8 1336 aaKnown RBP20.41■□□□□ 0.86
SHANK1-201ENST00000293441 DACH1Q9UI36 760 aa20.4■□□□□ 0.86
SHANK1-201ENST00000293441 FBXO31Q5XUX0 539 aaPredicted RBP20.4■□□□□ 0.86
SHANK1-201ENST00000293441 KRT85P78386 507 aa20.4■□□□□ 0.86
SHANK1-201ENST00000293441 PHF8Q9UPP1 1060 aa20.4■□□□□ 0.86
SHANK1-201ENST00000293441 POLR3DP05423 398 aaPredicted RBP20.39■□□□□ 0.86
SHANK1-201ENST00000293441 DEF6Q9H4E7 631 aa20.39■□□□□ 0.86
SHANK1-201ENST00000293441 FAM135AQ9P2D6 1515 aa20.39■□□□□ 0.86
SHANK1-201ENST00000293441 AKAP2Q9Y2D5 859 aa20.39■□□□□ 0.86
SHANK1-201ENST00000293441 LARP1Q6PKG0 1096 aaKnown RBP20.39■□□□□ 0.85
SHANK1-201ENST00000293441 TAF7Q15545 349 aaPredicted RBP20.39■□□□□ 0.85
SHANK1-201ENST00000293441 NGLY1Q96IV0 654 aa20.39■□□□□ 0.85
SHANK1-201ENST00000293441 PCF11O94913 1555 aaKnown RBP20.38■□□□□ 0.85
SHANK1-201ENST00000293441 MINDY4BA8MYZ0 360 aa20.38■□□□□ 0.85
SHANK1-201ENST00000293441 WDR97A6NE52 1622 aa20.38■□□□□ 0.85
SHANK1-201ENST00000293441 RPAP2Q8IXW5 612 aaPredicted RBP20.38■□□□□ 0.85
SHANK1-201ENST00000293441 AMOTQ4VCS5 1084 aa20.38■□□□□ 0.85
SHANK1-201ENST00000293441 PPFIBP1Q86W92 1011 aa20.38■□□□□ 0.85
SHANK1-201ENST00000293441 CRACR2BQ8N4Y2 399 aaPredicted RBP20.38■□□□□ 0.85
SHANK1-201ENST00000293441 CCDC184Q52MB2 194 aa20.37■□□□□ 0.85
SHANK1-201ENST00000293441 ZNF219Q9P2Y4 722 aaPredicted RBP20.37■□□□□ 0.85
SHANK1-201ENST00000293441 SMARCA5O60264 1052 aaPredicted RBP20.37■□□□□ 0.85
SHANK1-201ENST00000293441 CASTP20810 708 aaKnown RBP20.37■□□□□ 0.85
SHANK1-201ENST00000293441 CCDC192P0DO97 292 aa20.37■□□□□ 0.85
SHANK1-201ENST00000293441 KRT32Q14532 448 aa20.37■□□□□ 0.85
SHANK1-201ENST00000293441 IFIT1P09914 478 aaKnown RBP20.37■□□□□ 0.85
SHANK1-201ENST00000293441 PTPN23Q9H3S7 1636 aa20.37■□□□□ 0.85
SHANK1-201ENST00000293441 PLB1Q6P1J6 1458 aa20.36■□□□□ 0.85
SHANK1-201ENST00000293441 HMGB2P26583 209 aaKnown RBP20.36■□□□□ 0.85
SHANK1-201ENST00000293441 KIF1BPQ96EK5 621 aa20.36■□□□□ 0.85
SHANK1-201ENST00000293441 SPATA32Q96LK8 384 aa20.36■□□□□ 0.85
SHANK1-201ENST00000293441 DDX11Q96FC9 970 aa20.36■□□□□ 0.85
SHANK1-201ENST00000293441 BMP2KQ9NSY1 1161 aaPredicted RBP20.36■□□□□ 0.85
SHANK1-201ENST00000293441 CCP110O43303 1012 aa20.36■□□□□ 0.85
SHANK1-201ENST00000293441 SEPT11Q9NVA2 429 aaKnown RBP20.36■□□□□ 0.85
SHANK1-201ENST00000293441 BOLA2Q9H3K6 86 aa20.35■□□□□ 0.85
SHANK1-201ENST00000293441 DZIP1Q86YF9 867 aaKnown RBP20.35■□□□□ 0.85
SHANK1-201ENST00000293441 SLFN5Q08AF3 891 aa20.35■□□□□ 0.85
SHANK1-201ENST00000293441 MKNK2Q9HBH9 465 aa20.35■□□□□ 0.85
SHANK1-201ENST00000293441 TRMT112Q9UI30 125 aaKnown RBP20.35■□□□□ 0.85
SHANK1-201ENST00000293441 RPGRQ92834 1020 aaKnown RBP20.35■□□□□ 0.85
SHANK1-201ENST00000293441 EMILIN1Q9Y6C2 1016 aa20.35■□□□□ 0.85
SHANK1-201ENST00000293441 ZSCAN31Q96LW9 406 aaPredicted RBP20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms