RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 PXDNQ92626 1479 aa21.22■□□□□ 0.99
USP4-201ENST00000265560 RTL1A6NKG5 1358 aa21.22■□□□□ 0.99
USP4-201ENST00000265560 VAMP4O75379 141 aa21.22■□□□□ 0.99
USP4-201ENST00000265560 CSB-PGBD3P0DP91 1061 aa21.22■□□□□ 0.99
USP4-201ENST00000265560 TWISTNBQ3B726 338 aaPredicted RBP21.22■□□□□ 0.99
USP4-201ENST00000265560 TNS3Q68CZ2 1445 aa21.21■□□□□ 0.99
USP4-201ENST00000265560 ALS2Q96Q42 1657 aa21.21■□□□□ 0.99
USP4-201ENST00000265560 GAS2L2Q8NHY3 880 aa21.21■□□□□ 0.99
USP4-201ENST00000265560 IL17REQ8NFR9 667 aa21.2■□□□□ 0.98
USP4-201ENST00000265560 KIAA0232Q92628 1395 aa21.2■□□□□ 0.98
USP4-201ENST00000265560 SLIT3O75094 1523 aa21.2■□□□□ 0.98
USP4-201ENST00000265560 GNAT3A8MTJ3 354 aa21.2■□□□□ 0.98
USP4-201ENST00000265560 LGR6Q9HBX8 967 aa21.19■□□□□ 0.98
USP4-201ENST00000265560 TRIM27P14373 513 aa21.19■□□□□ 0.98
USP4-201ENST00000265560 FTSJ3Q8IY81 847 aaKnown RBP21.18■□□□□ 0.98
USP4-201ENST00000265560 TSPYL4Q9UJ04 414 aa21.18■□□□□ 0.98
USP4-201ENST00000265560 MPRIPQ6WCQ1 1025 aa21.18■□□□□ 0.98
USP4-201ENST00000265560 ERBB3P21860 1342 aa21.18■□□□□ 0.98
USP4-201ENST00000265560 ZKSCAN2Q63HK3 967 aa21.18■□□□□ 0.98
USP4-201ENST00000265560 CHL1O00533 1208 aa21.17■□□□□ 0.98
USP4-201ENST00000265560 NECTIN2Q92692 538 aa21.17■□□□□ 0.98
USP4-201ENST00000265560 PDE3AQ14432 1141 aa21.17■□□□□ 0.98
USP4-201ENST00000265560 ZNF530Q6P9A1 599 aaPredicted RBP21.16■□□□□ 0.98
USP4-201ENST00000265560 PRDM11Q9NQV5 511 aa21.16■□□□□ 0.98
USP4-201ENST00000265560 SOS2Q07890 1332 aaPredicted RBP21.15■□□□□ 0.98
USP4-201ENST00000265560 CRB1P82279 1406 aa21.14■□□□□ 0.98
USP4-201ENST00000265560 DZIP1LQ8IYY4 767 aaKnown RBP21.14■□□□□ 0.98
USP4-201ENST00000265560 CT47B1P0C2W7 299 aaPredicted RBP21.13■□□□□ 0.97
USP4-201ENST00000265560 ATF7IPQ6VMQ6 1270 aa21.13■□□□□ 0.97
USP4-201ENST00000265560 ITPRIPQ8IWB1 547 aa21.13■□□□□ 0.97
USP4-201ENST00000265560 MAP3K5Q99683 1374 aa21.13■□□□□ 0.97
USP4-201ENST00000265560 PIP4K2BP78356 416 aa21.12■□□□□ 0.97
USP4-201ENST00000265560 TMEM57Q8N5G2 664 aa21.11■□□□□ 0.97
USP4-201ENST00000265560 STRN4Q9NRL3 753 aa21.11■□□□□ 0.97
USP4-201ENST00000265560 USP35Q9P2H5 1018 aa21.11■□□□□ 0.97
USP4-201ENST00000265560 IGHDP01880 384 aa21.11■□□□□ 0.97
USP4-201ENST00000265560 MRPL50Q8N5N7 158 aaKnown RBP21.11■□□□□ 0.97
USP4-201ENST00000265560 PLEKHO1Q53GL0 409 aaPredicted RBP21.1■□□□□ 0.97
USP4-201ENST00000265560 KCNQ3O43525 872 aa21.09■□□□□ 0.97
USP4-201ENST00000265560 PHRF1Q9P1Y6 1649 aaKnown RBP21.09■□□□□ 0.97
USP4-201ENST00000265560 RAPGEF4Q8WZA2 1011 aa21.09■□□□□ 0.97
USP4-201ENST00000265560 PCDHB15Q9Y5E8 787 aa21.09■□□□□ 0.97
USP4-201ENST00000265560 ALDH1L2Q3SY69 923 aa21.08■□□□□ 0.96
USP4-201ENST00000265560 MVPQ14764 893 aaKnown RBP21.07■□□□□ 0.96
USP4-201ENST00000265560 C1orf141Q5JVX7 400 aa21.07■□□□□ 0.96
USP4-201ENST00000265560 TAF7Q15545 349 aaPredicted RBP21.06■□□□□ 0.96
USP4-201ENST00000265560 TOM1L2Q6ZVM7 507 aa21.06■□□□□ 0.96
USP4-201ENST00000265560 KIF16BQ96L93 1317 aa21.06■□□□□ 0.96
USP4-201ENST00000265560 SLC4A2P04920 1241 aa21.05■□□□□ 0.96
USP4-201ENST00000265560 IPO8O15397 1037 aaKnown RBP21.04■□□□□ 0.96
USP4-201ENST00000265560 TEFQ10587 303 aa21.04■□□□□ 0.96
USP4-201ENST00000265560 AKAP4Q5JQC9 854 aa21.04■□□□□ 0.96
USP4-201ENST00000265560 G2E3Q7L622 706 aa21.04■□□□□ 0.96
USP4-201ENST00000265560 HTATSF1O43719 755 aaKnown RBP21.03■□□□□ 0.96
USP4-201ENST00000265560 KDM2BQ8NHM5 1336 aa21.03■□□□□ 0.96
USP4-201ENST00000265560 COL18A1P39060 1754 aa21.02■□□□□ 0.96
USP4-201ENST00000265560 C1orf115Q9H7X2 142 aa21.02■□□□□ 0.96
USP4-201ENST00000265560 EIF2S2P20042 333 aaKnown RBP21.02■□□□□ 0.96
USP4-201ENST00000265560 RGS3P49796 1198 aa21.02■□□□□ 0.96
USP4-201ENST00000265560 AMOTQ4VCS5 1084 aa21.02■□□□□ 0.96
USP4-201ENST00000265560 LARP1Q6PKG0 1096 aaKnown RBP21.02■□□□□ 0.96
USP4-201ENST00000265560 TATP17735 454 aaPredicted RBP21.02■□□□□ 0.95
USP4-201ENST00000265560 EVA1CP58658 441 aa21.02■□□□□ 0.95
USP4-201ENST00000265560 CAMTA1Q9Y6Y1 1673 aa21.01■□□□□ 0.95
USP4-201ENST00000265560 MEGF6O75095 1541 aa21.01■□□□□ 0.95
USP4-201ENST00000265560 RNMTO43148 476 aaKnown RBP21.01■□□□□ 0.95
USP4-201ENST00000265560 BTBD11A6QL63 1104 aa21■□□□□ 0.95
USP4-201ENST00000265560 RBM19Q9Y4C8 960 aaKnown RBP21■□□□□ 0.95
USP4-201ENST00000265560 F6X3S4 739 aa21■□□□□ 0.95
USP4-201ENST00000265560 ZNF428Q96B54 188 aa21■□□□□ 0.95
USP4-201ENST00000265560 CRYBG1Q9Y4K1 1723 aa21■□□□□ 0.95
USP4-201ENST00000265560 ADAMTS2O95450 1211 aa20.99■□□□□ 0.95
USP4-201ENST00000265560 SLC39A6Q13433 755 aa20.99■□□□□ 0.95
USP4-201ENST00000265560 CENPQQ7L2Z9 268 aaPredicted RBP20.99■□□□□ 0.95
USP4-201ENST00000265560 CPDO75976 1380 aa20.99■□□□□ 0.95
USP4-201ENST00000265560 ROBO1Q9Y6N7 1651 aa20.99■□□□□ 0.95
USP4-201ENST00000265560 BTG4Q9NY30 223 aa20.98■□□□□ 0.95
USP4-201ENST00000265560 ANXA1P04083 346 aa20.98■□□□□ 0.95
USP4-201ENST00000265560 BCL11AQ9H165 835 aa20.98■□□□□ 0.95
USP4-201ENST00000265560 LTBP4Q8N2S1 1624 aa20.98■□□□□ 0.95
USP4-201ENST00000265560 PRAMEF22A3QJZ6 481 aa20.98■□□□□ 0.95
USP4-201ENST00000265560 CEMIPQ8WUJ3 1361 aa20.97■□□□□ 0.95
USP4-201ENST00000265560 NUTM2BA6NNL0 878 aaPredicted RBP20.97■□□□□ 0.95
USP4-201ENST00000265560 NUTM2EB1AL46 878 aaPredicted RBP20.97■□□□□ 0.95
USP4-201ENST00000265560 CYP27B1O15528 508 aa20.97■□□□□ 0.95
USP4-201ENST00000265560 SLC4A10Q6U841 1118 aa20.97■□□□□ 0.95
USP4-201ENST00000265560 NUTM2AQ8IVF1 878 aaPredicted RBP20.97■□□□□ 0.95
USP4-201ENST00000265560 DDX19BQ9UMR2 479 aa20.97■□□□□ 0.95
USP4-201ENST00000265560 KAT6BQ8WYB5 2073 aa20.97■□□□□ 0.95
USP4-201ENST00000265560 MS4A1P11836 297 aa20.96■□□□□ 0.95
USP4-201ENST00000265560 NFATC2IPQ8NCF5 419 aa20.96■□□□□ 0.95
USP4-201ENST00000265560 DDX54Q8TDD1 881 aaKnown RBP20.95■□□□□ 0.95
USP4-201ENST00000265560 WDR17Q8IZU2 1322 aa20.95■□□□□ 0.94
USP4-201ENST00000265560 NCAPD2Q15021 1401 aa20.95■□□□□ 0.94
USP4-201ENST00000265560 PHKG2P15735 406 aa20.94■□□□□ 0.94
USP4-201ENST00000265560 BRPF1P55201 1214 aaPredicted RBP20.94■□□□□ 0.94
USP4-201ENST00000265560 SPG7Q9UQ90 795 aa20.94■□□□□ 0.94
USP4-201ENST00000265560 NHSL1Q5SYE7 1610 aa20.94■□□□□ 0.94
USP4-201ENST00000265560 EIF4A1P60842 406 aaKnown RBP20.93■□□□□ 0.94
USP4-201ENST00000265560 ZBTB40Q9NUA8 1239 aa20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms