RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 BMP15O95972 392 aa7.1□□□□□ -1.27
VPS13D-201ENST00000011700 FKBP5Q13451 457 aaPredicted RBP7.1□□□□□ -1.27
VPS13D-201ENST00000011700 UBXN4Q92575 508 aa7.1□□□□□ -1.27
VPS13D-201ENST00000011700 L3MBTL2Q969R5 705 aa7.1□□□□□ -1.27
VPS13D-201ENST00000011700 NSD2O96028 1365 aa7.1□□□□□ -1.27
VPS13D-201ENST00000011700 SFPQP23246 707 aaKnown RBP eCLIP7.09□□□□□ -1.27
VPS13D-201ENST00000011700 ZNF692Q9BU19 519 aaPredicted RBP7.09□□□□□ -1.27
VPS13D-201ENST00000011700 GNAI2P04899 355 aa7.09□□□□□ -1.27
VPS13D-201ENST00000011700 ARHGAP29Q52LW3 1261 aa7.09□□□□□ -1.27
VPS13D-201ENST00000011700 C10orf67Q8IYJ2 551 aa7.09□□□□□ -1.27
VPS13D-201ENST00000011700 TRAK2O60296 914 aa7.09□□□□□ -1.27
VPS13D-201ENST00000011700 SERPINC1P01008 464 aa7.09□□□□□ -1.27
VPS13D-201ENST00000011700 SETSIPP0DME0 302 aa7.09□□□□□ -1.27
VPS13D-201ENST00000011700 CCDC12Q8WUD4 166 aaPredicted RBP7.09□□□□□ -1.27
VPS13D-201ENST00000011700 JAKMIP2Q96AA8 810 aa7.09□□□□□ -1.27
VPS13D-201ENST00000011700 ALS2CR12Q96Q35 445 aa7.09□□□□□ -1.27
VPS13D-201ENST00000011700 U3KPZ7 1027 aaPredicted RBP7.09□□□□□ -1.27
VPS13D-201ENST00000011700 TMCO3Q6UWJ1 677 aa7.09□□□□□ -1.27
VPS13D-201ENST00000011700 PRIMPOLQ96LW4 560 aa7.09□□□□□ -1.27
VPS13D-201ENST00000011700 TSHZ2Q9NRE2 1034 aa7.09□□□□□ -1.27
VPS13D-201ENST00000011700 ARID4AP29374 1257 aaPredicted RBP7.09□□□□□ -1.27
VPS13D-201ENST00000011700 CCDC158Q5M9N0 1113 aa7.09□□□□□ -1.27
VPS13D-201ENST00000011700 TNMDQ9H2S6 317 aa7.09□□□□□ -1.27
VPS13D-201ENST00000011700 PTPN23Q9H3S7 1636 aa7.09□□□□□ -1.27
VPS13D-201ENST00000011700 AIMP1Q12904 312 aaKnown RBP7.09□□□□□ -1.27
VPS13D-201ENST00000011700 SWAP70Q9UH65 585 aa7.09□□□□□ -1.27
VPS13D-201ENST00000011700 USO1O60763 962 aaKnown RBP7.09□□□□□ -1.27
VPS13D-201ENST00000011700 VIMP08670 466 aaKnown RBP7.09□□□□□ -1.27
VPS13D-201ENST00000011700 TAF4BQ92750 862 aa7.09□□□□□ -1.27
VPS13D-201ENST00000011700 GGT6Q6P531 493 aa7.09□□□□□ -1.27
VPS13D-201ENST00000011700 MPHOSPH6Q99547 160 aaKnown RBP7.09□□□□□ -1.27
VPS13D-201ENST00000011700 EHMT1Q9H9B1 1298 aa7.09□□□□□ -1.27
VPS13D-201ENST00000011700 RAB11FIP3O75154 756 aa7.09□□□□□ -1.28
VPS13D-201ENST00000011700 PPP4R3AQ6IN85 833 aa7.09□□□□□ -1.28
VPS13D-201ENST00000011700 SLF2Q8IX21 1173 aa7.09□□□□□ -1.28
VPS13D-201ENST00000011700 POGZQ7Z3K3 1410 aa7.08□□□□□ -1.28
VPS13D-201ENST00000011700 RBM26Q5T8P6 1007 aaKnown RBP7.08□□□□□ -1.28
VPS13D-201ENST00000011700 FANCD2Q9BXW9 1451 aa7.08□□□□□ -1.28
VPS13D-201ENST00000011700 SPA17Q15506 151 aa7.08□□□□□ -1.28
VPS13D-201ENST00000011700 PDCL3Q9H2J4 239 aa7.08□□□□□ -1.28
VPS13D-201ENST00000011700 HS1BP3Q53T59 392 aa7.08□□□□□ -1.28
VPS13D-201ENST00000011700 MEX3CQ5U5Q3 659 aaKnown RBP7.08□□□□□ -1.28
VPS13D-201ENST00000011700 ZSCAN30Q86W11 494 aa7.08□□□□□ -1.28
VPS13D-201ENST00000011700 PSME1Q06323 249 aa7.08□□□□□ -1.28
VPS13D-201ENST00000011700 STK38Q15208 465 aa7.08□□□□□ -1.28
VPS13D-201ENST00000011700 DNAJC21Q5F1R6 531 aaKnown RBP7.08□□□□□ -1.28
VPS13D-201ENST00000011700 RNF214Q8ND24 703 aa7.08□□□□□ -1.28
VPS13D-201ENST00000011700 RAPGEF4Q8WZA2 1011 aa7.08□□□□□ -1.28
VPS13D-201ENST00000011700 ANKRD12Q6UB98 2062 aa7.08□□□□□ -1.28
VPS13D-201ENST00000011700 ANKRD50Q9ULJ7 1429 aa7.08□□□□□ -1.28
VPS13D-201ENST00000011700 MAP2K1Q02750 393 aaPredicted RBP7.08□□□□□ -1.28
VPS13D-201ENST00000011700 KRT18P05783 430 aaKnown RBP7.08□□□□□ -1.28
VPS13D-201ENST00000011700 ZNF330Q9Y3S2 320 aaPredicted RBP7.08□□□□□ -1.28
VPS13D-201ENST00000011700 RPGRIP1LQ68CZ1 1315 aa7.08□□□□□ -1.28
VPS13D-201ENST00000011700 DYNC1I1O14576 645 aa7.08□□□□□ -1.28
VPS13D-201ENST00000011700 FKBP15Q5T1M5 1219 aa7.08□□□□□ -1.28
VPS13D-201ENST00000011700 CTAGE1Q96RT6 745 aa7.08□□□□□ -1.28
VPS13D-201ENST00000011700 NSRP1Q9H0G5 558 aaKnown RBP7.08□□□□□ -1.28
VPS13D-201ENST00000011700 PATL2C9JE40 543 aaKnown RBP7.07□□□□□ -1.28
VPS13D-201ENST00000011700 CCDC175P0C221 793 aa7.07□□□□□ -1.28
VPS13D-201ENST00000011700 AMPD3Q01432 767 aa7.07□□□□□ -1.28
VPS13D-201ENST00000011700 NKTRP30414 1462 aaKnown RBP7.07□□□□□ -1.28
VPS13D-201ENST00000011700 USP25Q9UHP3 1055 aa7.07□□□□□ -1.28
VPS13D-201ENST00000011700 AQRO60306 1485 aaKnown RBP eCLIP7.07□□□□□ -1.281e-6■■■■■ 30.2
VPS13D-201ENST00000011700 FERP16591 822 aa7.07□□□□□ -1.28
VPS13D-201ENST00000011700 PDILTQ8N807 584 aa7.07□□□□□ -1.28
VPS13D-201ENST00000011700 UNC13AQ9UPW8 1703 aa7.07□□□□□ -1.28
VPS13D-201ENST00000011700 RALGAPBQ86X10 1494 aa7.07□□□□□ -1.28
VPS13D-201ENST00000011700 PANK3Q9H999 370 aa7.07□□□□□ -1.28
VPS13D-201ENST00000011700 GABPB2Q8TAK5 448 aaPredicted RBP7.07□□□□□ -1.28
VPS13D-201ENST00000011700 CCDC110Q8TBZ0 833 aa7.07□□□□□ -1.28
VPS13D-201ENST00000011700 IQGAP2Q13576 1575 aa7.07□□□□□ -1.28
VPS13D-201ENST00000011700 ANKRD62A6NC57 917 aa7.07□□□□□ -1.28
VPS13D-201ENST00000011700 HAUS2Q9NVX0 235 aa7.07□□□□□ -1.28
VPS13D-201ENST00000011700 RIPK4P57078 832 aa7.06□□□□□ -1.28
VPS13D-201ENST00000011700 ANAPC15P60006 121 aa7.06□□□□□ -1.28
VPS13D-201ENST00000011700 CROCCP2Q86T23 111 aa7.06□□□□□ -1.28
VPS13D-201ENST00000011700 PAF1Q8N7H5 531 aa7.06□□□□□ -1.28
VPS13D-201ENST00000011700 KIAA1524Q8TCG1 905 aa7.06□□□□□ -1.28
VPS13D-201ENST00000011700 STK26Q9P289 416 aa7.06□□□□□ -1.28
VPS13D-201ENST00000011700 DNMBPQ6XZF7 1577 aa7.06□□□□□ -1.28
VPS13D-201ENST00000011700 AKAP2Q9Y2D5 859 aa7.06□□□□□ -1.28
VPS13D-201ENST00000011700 ST20-MTHFSA0A0A6YYL1 179 aa7.06□□□□□ -1.28
VPS13D-201ENST00000011700 MAP3K11Q16584 847 aa7.06□□□□□ -1.28
VPS13D-201ENST00000011700 TSG101Q99816 390 aa7.06□□□□□ -1.28
VPS13D-201ENST00000011700 POLR1AO95602 1720 aaPredicted RBP7.06□□□□□ -1.28
VPS13D-201ENST00000011700 LAMC3Q9Y6N6 1575 aa7.06□□□□□ -1.28
VPS13D-201ENST00000011700 PAFAH1B1P43034 410 aa7.06□□□□□ -1.28
VPS13D-201ENST00000011700 NFKBIBQ15653 356 aa7.06□□□□□ -1.28
VPS13D-201ENST00000011700 FMNL2Q96PY5 1086 aa7.06□□□□□ -1.28
VPS13D-201ENST00000011700 KAT6AQ92794 2004 aa7.06□□□□□ -1.28
VPS13D-201ENST00000011700 CKAP4Q07065 602 aaKnown RBP7.06□□□□□ -1.28
VPS13D-201ENST00000011700 PIBF1Q8WXW3 757 aa7.06□□□□□ -1.28
VPS13D-201ENST00000011700 ANO10Q9NW15 660 aa7.06□□□□□ -1.28
VPS13D-201ENST00000011700 ATAD2BQ9ULI0 1458 aa7.06□□□□□ -1.28
VPS13D-201ENST00000011700 K7ELQ4 463 aaPredicted RBP7.06□□□□□ -1.28
VPS13D-201ENST00000011700 CCDC14Q49A88 953 aa7.06□□□□□ -1.28
VPS13D-201ENST00000011700 CCDC178Q5BJE1 867 aa7.06□□□□□ -1.28
VPS13D-201ENST00000011700 CEP63Q96MT8 703 aa7.06□□□□□ -1.28
VPS13D-201ENST00000011700 SLC52A1Q9NWF4 448 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms