RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 ZNF595Q8IYB9 648 aa7.31□□□□□ -1.24
NUP54-215ENST00000514313 ARFGAP1Q8N6T3 406 aa7.31□□□□□ -1.24
NUP54-215ENST00000514313 PCDH20Q8N6Y1 951 aaKnown RBP7.31□□□□□ -1.24
NUP54-215ENST00000514313 SLC16A11Q8NCK7 471 aa7.31□□□□□ -1.24
NUP54-215ENST00000514313 ZNF548Q8NEK5 533 aaPredicted RBP7.31□□□□□ -1.24
NUP54-215ENST00000514313 OR2AK2Q8NG84 335 aa7.31□□□□□ -1.24
NUP54-215ENST00000514313 C16orf52Q8NHV5 167 aa7.31□□□□□ -1.24
NUP54-215ENST00000514313 TAS1R2Q8TE23 839 aa7.31□□□□□ -1.24
NUP54-215ENST00000514313 DEPDC1BQ8WUY9 529 aa7.31□□□□□ -1.24
NUP54-215ENST00000514313 SLC25A23Q9BV35 468 aa7.31□□□□□ -1.24
NUP54-215ENST00000514313 NUP85Q9BW27 656 aa7.31□□□□□ -1.24
NUP54-215ENST00000514313 KRTAP4-7Q9BYR0 210 aa7.31□□□□□ -1.24
NUP54-215ENST00000514313 TMEM39BQ9GZU3 492 aa7.31□□□□□ -1.24
NUP54-215ENST00000514313 RAD21L1Q9H4I0 556 aa7.31□□□□□ -1.24
NUP54-215ENST00000514313 ANKZF1Q9H8Y5 726 aa7.31□□□□□ -1.24
NUP54-215ENST00000514313 CNOT10Q9H9A5 744 aaKnown RBP7.31□□□□□ -1.24
NUP54-215ENST00000514313 NRIP3Q9NQ35 241 aa7.31□□□□□ -1.24
NUP54-215ENST00000514313 ZBTB40Q9NUA8 1239 aa7.31□□□□□ -1.24
NUP54-215ENST00000514313 ABCF3Q9NUQ8 709 aa7.31□□□□□ -1.24
NUP54-215ENST00000514313 TSPYL4Q9UJ04 414 aa7.31□□□□□ -1.24
NUP54-215ENST00000514313 B3GALT5Q9Y2C3 310 aa7.31□□□□□ -1.24
NUP54-215ENST00000514313 BECN2A8MW95 431 aa7.3□□□□□ -1.24
NUP54-215ENST00000514313 H0YIN7 160 aa7.3□□□□□ -1.24
NUP54-215ENST00000514313 SPINT2O43291 252 aa7.3□□□□□ -1.24
NUP54-215ENST00000514313 NDUFS7O75251 213 aa7.3□□□□□ -1.24
NUP54-215ENST00000514313 DDNO94850 711 aaPredicted RBP7.3□□□□□ -1.24
NUP54-215ENST00000514313 LCATP04180 440 aa7.3□□□□□ -1.24
NUP54-215ENST00000514313 ATP5BP06576 529 aaKnown RBP7.3□□□□□ -1.24
NUP54-215ENST00000514313 NAGAP17050 411 aa7.3□□□□□ -1.24
NUP54-215ENST00000514313 BDKRB2P30411 391 aa7.3□□□□□ -1.24
NUP54-215ENST00000514313 POLGP54098 1239 aaPredicted RBP7.3□□□□□ -1.24
NUP54-215ENST00000514313 MVPQ14764 893 aaKnown RBP7.3□□□□□ -1.24
NUP54-215ENST00000514313 MEP1AQ16819 746 aa7.3□□□□□ -1.24
NUP54-215ENST00000514313 MANEAQ5SRI9 462 aa7.3□□□□□ -1.24
NUP54-215ENST00000514313 ARMC4Q5T2S8 1044 aa7.3□□□□□ -1.24
NUP54-215ENST00000514313 CAMKVQ8NCB2 501 aa7.3□□□□□ -1.24
NUP54-215ENST00000514313 HMGCLL1Q8TB92 370 aa7.3□□□□□ -1.24
NUP54-215ENST00000514313 PIGOQ8TEQ8 1089 aa7.3□□□□□ -1.24
NUP54-215ENST00000514313 ADAMTS14Q8WXS8 1223 aa7.3□□□□□ -1.24
NUP54-215ENST00000514313 LRFN5Q96NI6 719 aa7.3□□□□□ -1.24
NUP54-215ENST00000514313 SMC6Q96SB8 1091 aa7.3□□□□□ -1.24
NUP54-215ENST00000514313 GFI1Q99684 422 aa7.3□□□□□ -1.24
NUP54-215ENST00000514313 C17orf75Q9HAS0 396 aa7.3□□□□□ -1.24
NUP54-215ENST00000514313 PLAC1Q9HBJ0 212 aa7.3□□□□□ -1.24
NUP54-215ENST00000514313 PFDN4Q9NQP4 134 aa7.3□□□□□ -1.24
NUP54-215ENST00000514313 ARGLU1Q9NWB6 273 aaPredicted RBP7.3□□□□□ -1.24
NUP54-215ENST00000514313 CHCHD3Q9NX63 227 aaKnown RBP7.3□□□□□ -1.24
NUP54-215ENST00000514313 TRMT1Q9NXH9 659 aaKnown RBP7.3□□□□□ -1.24
NUP54-215ENST00000514313 DDX25Q9UHL0 483 aaKnown RBP7.3□□□□□ -1.24
NUP54-215ENST00000514313 RASAL2Q9UJF2 1139 aa7.3□□□□□ -1.24
NUP54-215ENST00000514313 HS3ST3B1Q9Y662 390 aa7.3□□□□□ -1.24
NUP54-215ENST00000514313 ZFP37Q9Y6Q3 630 aaPredicted RBP7.3□□□□□ -1.24
NUP54-215ENST00000514313 PRF1P14222 555 aa7.29□□□□□ -1.24
NUP54-215ENST00000514313 NR2F2P24468 414 aa7.29□□□□□ -1.24
NUP54-215ENST00000514313 HRH2P25021 359 aa7.29□□□□□ -1.24
NUP54-215ENST00000514313 OAS2P29728 719 aaKnown RBP7.29□□□□□ -1.24
NUP54-215ENST00000514313 STX2P32856 288 aa7.29□□□□□ -1.24
NUP54-215ENST00000514313 HNRNPH2P55795 449 aaKnown RBP7.29□□□□□ -1.24
NUP54-215ENST00000514313 PLIN5Q00G26 463 aa7.29□□□□□ -1.24
NUP54-215ENST00000514313 DECR1Q16698 335 aa7.29□□□□□ -1.24
NUP54-215ENST00000514313 PAPPA-AS1Q5QFB9 102 aa7.29□□□□□ -1.24
NUP54-215ENST00000514313 TPRG1Q6ZUI0 275 aa7.29□□□□□ -1.24
NUP54-215ENST00000514313 ERN2Q76MJ5 926 aaKnown RBP7.29□□□□□ -1.24
NUP54-215ENST00000514313 NEXN-AS1Q8NBZ9 246 aa7.29□□□□□ -1.24
NUP54-215ENST00000514313 TAAR8Q969N4 342 aa7.29□□□□□ -1.24
NUP54-215ENST00000514313 KXD1Q9BQD3 176 aa7.29□□□□□ -1.24
NUP54-215ENST00000514313 PADI3Q9ULW8 664 aa7.29□□□□□ -1.24
NUP54-215ENST00000514313 TMEM184BQ9Y519 407 aaPredicted RBP7.29□□□□□ -1.24
NUP54-215ENST00000514313 A0A0B4J293 547 aa7.28□□□□□ -1.24
NUP54-215ENST00000514313 IGHV4-28A0A0C4DH34 117 aa7.28□□□□□ -1.24
NUP54-215ENST00000514313 A0A0U1RQG5 324 aaPredicted RBP7.28□□□□□ -1.24
NUP54-215ENST00000514313 PI4K2BG5E9Z4 385 aa7.28□□□□□ -1.24
NUP54-215ENST00000514313 IPO8O15397 1037 aaKnown RBP7.28□□□□□ -1.24
NUP54-215ENST00000514313 ZNF217O75362 1048 aa7.28□□□□□ -1.24
NUP54-215ENST00000514313 CELF2O95319 508 aaKnown RBP7.28□□□□□ -1.24
NUP54-215ENST00000514313 PENKP01210 267 aaPredicted RBP7.28□□□□□ -1.24
NUP54-215ENST00000514313 TAS2R38P59533 333 aa7.28□□□□□ -1.24
NUP54-215ENST00000514313 ZNF626Q68DY1 528 aa7.28□□□□□ -1.24
NUP54-215ENST00000514313 PET117Q6UWS5 81 aa7.28□□□□□ -1.24
NUP54-215ENST00000514313 WDR20Q8TBZ3 569 aa7.28□□□□□ -1.24
NUP54-215ENST00000514313 SLC25A28Q96A46 364 aa7.28□□□□□ -1.24
NUP54-215ENST00000514313 SPACA9Q96E40 222 aaPredicted RBP7.28□□□□□ -1.24
NUP54-215ENST00000514313 ARSGQ96EG1 525 aa7.28□□□□□ -1.24
NUP54-215ENST00000514313 FNBP1Q96RU3 617 aa7.28□□□□□ -1.24
NUP54-215ENST00000514313 CRAMP1Q96RY5 1269 aa7.28□□□□□ -1.24
NUP54-215ENST00000514313 CITED2Q99967 270 aaPredicted RBP7.28□□□□□ -1.24
NUP54-215ENST00000514313 ABHD6Q9BV23 337 aa7.28□□□□□ -1.24
NUP54-215ENST00000514313 THUMPD3Q9BV44 507 aaKnown RBP7.28□□□□□ -1.24
NUP54-215ENST00000514313 XAB2Q9HCS7 855 aaKnown RBP7.28□□□□□ -1.24
NUP54-215ENST00000514313 MBNL1Q9NR56 388 aaKnown RBP7.28□□□□□ -1.24
NUP54-215ENST00000514313 LIPGQ9Y5X9 500 aa7.28□□□□□ -1.24
NUP54-215ENST00000514313 POMT1Q9Y6A1 747 aa7.28□□□□□ -1.24
NUP54-215ENST00000514313 TRAV34A0A0B4J273 112 aa7.27□□□□□ -1.25
NUP54-215ENST00000514313 IGLV5-39A0A0G2JS06 123 aa7.27□□□□□ -1.25
NUP54-215ENST00000514313 FAM90A26D6RGX4 464 aa7.27□□□□□ -1.25
NUP54-215ENST00000514313 VWA5AO00534 786 aa7.27□□□□□ -1.25
NUP54-215ENST00000514313 NDUFS4O43181 175 aa7.27□□□□□ -1.25
NUP54-215ENST00000514313 PRAMEF11O60813 436 aa7.27□□□□□ -1.25
NUP54-215ENST00000514313 TOMM70O94826 608 aa7.27□□□□□ -1.25
NUP54-215ENST00000514313 SLU7O95391 586 aaKnown RBP7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 114.9 ms